fix(schema): block scalars keep '#' as literal content

Inside a YAML block scalar '#' is content, not a comment; parseBlockScalar
was routing lines through stripComment/isBlank, truncating descriptions
like 'see issue #2029' and blanking comment-looking lines. Use the raw
line inside the scalar. Adds a pinning test.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

src/commands/autopilot.ts

@@ -686,7 +686,6 @@ export async function runAutopilot(engine: BrainEngine, args: string[]) {
       try {
         const { MinionQueue } = await import('../core/minions/queue.ts');
         const { computeRecommendations, embeddingProviderConfigured, HOSTED_EMBED_KEY_CONFIG } = await import('../core/brain-score-recommendations.ts');
-        const { countExtractionLag } = await import('../core/remediation/context.ts');
         const queue = new MinionQueue(engine);
         const slotMs = Math.floor(Date.now() / (baseInterval * 1000)) * baseInterval * 1000;
         const slot = new Date(slotMs).toISOString();
@@ -878,9 +877,6 @@ export async function runAutopilot(engine: BrainEngine, args: string[]) {
             return !!(process.env[envVar] || (cfgField ? embedKeyCfg[cfgField] : undefined));
           }),
           hasChatApiKey: !!(process.env.ANTHROPIC_API_KEY || await engine.getConfig('anthropic_api_key')),
-          // Real extraction-lag gate for sync.repo/extract.all — same counter
-          // loadRecommendationContext uses (replaces the health.stale_pages proxy).
-          extractionLagPages: await countExtractionLag(engine),
         };
         // v0.41.18.0 (A5 + A19 + A22, T15): consult onboard recommendations
         // ALONGSIDE doctor's brain-score recommendations. Onboard's 4 new

src/core/ai/anthropic-key.ts

@@ -18,12 +18,22 @@
 import { loadConfig } from '../config.ts';
 
 export function hasAnthropicKey(): boolean {
-  if (process.env.ANTHROPIC_API_KEY) return true;
+  return resolveAnthropicKey() !== undefined;
+}
+
+/**
+ * Resolve the actual key value: env first, then the gbrain config file.
+ * Callers constructing an Anthropic client directly (e.g. the legacy
+ * subagent path) must pass this as `apiKey` — a bare `new Anthropic()`
+ * only sees env, so launchd/MCP workers with config-stored keys fail.
+ */
+export function resolveAnthropicKey(): string | undefined {
+  if (process.env.ANTHROPIC_API_KEY) return process.env.ANTHROPIC_API_KEY;
   try {
     const cfg = loadConfig();
-    if (cfg?.anthropic_api_key) return true;
+    if (cfg?.anthropic_api_key) return cfg.anthropic_api_key;
   } catch {
     // loadConfig may throw on first-run installs; treat as no key available.
   }
-  return false;
+  return undefined;
 }

src/core/brain-score-recommendations.ts

@@ -146,16 +146,6 @@ export interface RecommendationContext {
   chatModel?: string;
   /** Whether the chat provider has a usable API key. */
   hasChatApiKey?: boolean;
-  /**
-   * Count of pages needing link/timeline extraction — the SAME staleness the
-   * `gbrain extract --stale` walk and doctor's `links_extraction_lag` check use
-   * (`engine.countStalePagesForExtraction`). Gates the sync→extract pipeline
-   * (sync.repo / extract.all). Replaces the old `health.stale_pages` gate, which
-   * counted "pages whose updated_at predates their newest timeline entry" — a
-   * proxy that broke when the updated_at-on-timeline-insert trigger was dropped
-   * (migration v10) and never reflected real extraction work.
-   */
-  extractionLagPages?: number;
 }
 
 /** Triage result for one check. */
@@ -202,28 +192,20 @@ export function computeRecommendations(
   const source = ctx.sourceId ?? 'default';
 
   // ---------------------------------------------------------------------
-  // sync.repo + extract.all — the materialization pipeline, gated on the REAL
-  // extraction lag (pages whose link/timeline edges are stale), NOT on the
-  // legacy `health.stale_pages` proxy. `extractionLagPages` comes from the same
-  // counter the `extract --stale` walk + doctor's `links_extraction_lag` use, so
-  // the recommendation can only fire when running extract will actually reduce
-  // it (and clear the rec). See RecommendationContext.extractionLagPages.
-  // sync.repo is the prerequisite: re-sync so pages are current before extract
-  // materializes their edges.
+  // sync.repo — fires when sync hasn't run recently OR pages are stale
   // ---------------------------------------------------------------------
-  const extractionLag = ctx.extractionLagPages ?? 0;
-  if (ctx.repoPath && extractionLag > 0) {
+  if (ctx.repoPath && health.stale_pages > 0) {
     const params = { repoPath: ctx.repoPath, sourceId: ctx.sourceId, noEmbed: true };
     out.push({
       id: 'sync.repo',
       job: 'sync',
       params,
       idempotency_key: idemKey(source, 'sync', params),
-      severity: extractionLag > 50 ? 'high' : 'medium',
-      est_seconds: Math.min(600, 30 + extractionLag * 0.5),
+      severity: health.stale_pages > 50 ? 'high' : 'medium',
+      est_seconds: Math.min(600, 30 + health.stale_pages * 0.5),
       est_usd_cost: 0,  // sync is fs+DB only
       depends_on: [],
-      rationale: `Sync before extracting ${extractionLag} page${extractionLag === 1 ? '' : 's'} with stale link/timeline edges`,
+      rationale: `${health.stale_pages} stale page${health.stale_pages === 1 ? '' : 's'} on disk`,
       status: 'remediable',
     });
   }
@@ -255,7 +237,7 @@ export function computeRecommendations(
       est_seconds: Math.min(3600, 5 + health.missing_embeddings * 0.05),
       est_usd_cost,
       // sync should run first so embed sees fresh pages.
-      depends_on: ctx.repoPath && extractionLag > 0 ? ['sync.repo'] : [],
+      depends_on: ctx.repoPath && health.stale_pages > 0 ? ['sync.repo'] : [],
       rationale: `${health.missing_embeddings} chunk${health.missing_embeddings === 1 ? '' : 's'} invisible to vector search`,
       status: 'remediable',
     });
@@ -285,7 +267,7 @@ export function computeRecommendations(
   // Triggered when sync.repo fires (because sync was set to noEmbed:true,
   // and noExtract:true after T5 lands → extract job is the materializer).
   // ---------------------------------------------------------------------
-  if (ctx.repoPath && extractionLag > 0) {
+  if (ctx.repoPath && health.stale_pages > 0) {
     const params = { mode: 'all', dir: ctx.repoPath };
     out.push({
       id: 'extract.all',
@@ -296,7 +278,7 @@ export function computeRecommendations(
       est_seconds: Math.min(600, 30 + health.page_count * 0.01),
       est_usd_cost: 0,
       depends_on: ['sync.repo'],
-      rationale: `Materialize link + timeline edges for ${extractionLag} page${extractionLag === 1 ? '' : 's'} with stale extraction`,
+      rationale: 'Materialize link + timeline edges from fresh pages',
       status: 'remediable',
     });
   }

src/core/minions/handlers/subagent.ts

@@ -48,6 +48,7 @@ import {
   logSubagentHeartbeat,
 } from './subagent-audit.ts';
 import { resolveModel, isAnthropicProvider, TIER_DEFAULTS } from '../../model-config.ts';
+import { resolveAnthropicKey } from '../../ai/anthropic-key.ts';
 import { buildSystemPrompt, DEFAULT_SUBAGENT_SYSTEM } from '../system-prompt.ts';
 import { toolLoop as gatewayToolLoop } from '../../ai/gateway.ts';
 import type { ChatToolDef, ChatMessage, ChatBlock, ChatResult, ToolHandler } from '../../ai/gateway.ts';
@@ -186,7 +187,10 @@ export function makeSubagentHandler(deps: SubagentDeps) {
   // lives at sdk.messages.create. Assigning sdk.messages directly gets the
   // right object; JS method-call semantics preserve `this` at the call
   // site (subagent.ts invokes client.create(...) with client === sdk.messages).
-  const makeAnthropic = deps.makeAnthropic ?? (() => new Anthropic());
+  // Resolve the key env-first, then config (anthropic_api_key) — a bare
+  // new Anthropic() only reads env, so launchd/MCP workers whose key lives
+  // in the gbrain config file would fail auth (#2048).
+  const makeAnthropic = deps.makeAnthropic ?? (() => new Anthropic({ apiKey: resolveAnthropicKey() }));
   const client: MessagesClient = deps.client ?? makeAnthropic().messages;
   const config = deps.config ?? loadConfig() ?? ({ engine: 'postgres' } as GBrainConfig);
   const rateLeaseKey = deps.rateLeaseKey ?? DEFAULT_RATE_KEY;

src/core/operations.ts

@@ -4562,7 +4562,8 @@ const list_schema_packs: Operation = {
     const { existsSync, readdirSync } = await import('node:fs');
     const { join } = await import('node:path');
     const { gbrainPath } = await import('./config.ts');
-    const bundled = ['gbrain-base', 'gbrain-recommended'];
+    const { BUNDLED_PACK_NAMES } = await import('./schema-pack/bundled.ts');
+    const bundled = [...BUNDLED_PACK_NAMES];
     const installedDir = gbrainPath('schema-packs');
     const installed: string[] = [];
     if (existsSync(installedDir)) {

src/core/remediation/context.ts

@@ -8,7 +8,6 @@
 
 import type { BrainEngine } from '../engine.ts';
 import type { RecommendationContext } from '../brain-score-recommendations.ts';
-import { LINK_EXTRACTOR_VERSION_TS } from '../link-extraction.ts';
 
 // Re-export so consumers can `import { RecommendationContext } from '../remediation'`
 // — the canonical RecommendationContext type still lives in
@@ -69,29 +68,5 @@ export async function loadRecommendationContext(
     embeddingDimensions,
     embeddingProviderConfigured: embeddingConfigured,
     hasChatApiKey: !!(process.env.ANTHROPIC_API_KEY || fileCfg?.anthropic_api_key),
-    extractionLagPages: await countExtractionLag(engine),
   };
 }
-
-/**
- * Real extraction-lag count — the SAME staleness `gbrain extract --stale`
- * processes (engine.countStalePagesForExtraction with
- * versionTs=LINK_EXTRACTOR_VERSION_TS, matching doctor's links_extraction_lag
- * check — without versionTs, pages stamped before an extractor version bump
- * would lag for doctor/extract but never trip this gate). Drives the
- * sync→extract recommendation pipeline; replaces the legacy
- * `health.stale_pages` proxy that no longer reflected real extraction work
- * after the v10 trigger drop.
- *
- * Shared by loadRecommendationContext AND the D7 per-step recheck in
- * runRemediation — the recheck MUST refresh this gate alongside getHealth,
- * or a completed extract step keeps re-firing off the frozen initial count.
- */
-export async function countExtractionLag(engine: BrainEngine): Promise<number> {
-  try {
-    return await engine.countStalePagesForExtraction({ versionTs: LINK_EXTRACTOR_VERSION_TS });
-  } catch {
-    /* counter unavailable (very old brain / mid-migration) — treat as 0 */
-    return 0;
-  }
-}

src/core/remediation/run.ts

@@ -16,7 +16,7 @@ import {
   computeRecommendations,
 } from '../brain-score-recommendations.ts';
 import type { RemediationStep } from '../remediation-step.ts';
-import { countExtractionLag, loadRecommendationContext } from './context.ts';
+import { loadRecommendationContext } from './context.ts';
 import { computeRemediationPlan } from './plan.ts';
 import type {
   RemediationHooks,
@@ -65,7 +65,7 @@ export async function runRemediation(
     clearRemediationCheckpoint,
   } = await import('../remediation-checkpoint.ts');
 
-  let ctx = await loadRecommendationContext(engine);
+  const ctx = await loadRecommendationContext(engine);
 
   // Pre-flight ceiling check via the shared plan computation.
   const initialPlan = await computeRemediationPlan(engine, { targetScore });
@@ -305,11 +305,6 @@ export async function runRemediation(
       // steps with bumped retry suffix (D1).
       if (recs.length === 0 || stepCount >= maxJobs) break;
       const freshHealth = await engine.getHealth();
-      // Refresh the extraction-lag gate alongside health: ctx was loaded once
-      // before the loop, and a completed sync/extract step is exactly what
-      // drives the count down. Reusing the frozen initial count would re-fire
-      // sync.repo/extract.all every recheck until maxJobs.
-      ctx = { ...ctx, extractionLagPages: await countExtractionLag(engine) };
       recs = computeRecommendations(freshHealth, ctx).filter((r) => r.status === 'remediable');
     }
   };

src/core/schema-pack/bundled.ts

@@ -0,0 +1,24 @@
+// Bundled schema-pack registry — single source of truth for the packs that
+// ship in src/core/schema-pack/base/. Keep every bundled-pack consumer
+// (CLI/MCP inspection, active-pack loading, mutation guards, upgrade
+// discovery) on this one list so they cannot drift.
+//
+// v0.39 T8 — gbrain-base + gbrain-recommended.
+// v0.41 T4 — lens packs: creator, investor, engineer, everything (meta-pack).
+// v0.42 type-unification — gbrain-base-v2, the 15-type canonical successor.
+
+export const BUNDLED_PACK_NAMES = [
+  'gbrain-base',
+  'gbrain-recommended',
+  'gbrain-creator',
+  'gbrain-investor',
+  'gbrain-engineer',
+  'gbrain-everything',
+  'gbrain-base-v2',
+] as const;
+
+export type BundledPackName = typeof BUNDLED_PACK_NAMES[number];
+
+export function isBundledPackName(name: string): name is BundledPackName {
+  return (BUNDLED_PACK_NAMES as readonly string[]).includes(name);
+}

src/core/schema-pack/load-active.ts

@@ -37,6 +37,7 @@ import {
   type ResolutionInput,
   type ResolutionResult,
 } from './registry.ts';
+import { isBundledPackName } from './bundled.ts';
 
 /**
  * Inputs the caller (operations.ts handler / engine query path) provides.
@@ -92,28 +93,7 @@ export function _resetPackLocatorForTests(): void {
  * throwing UnknownPackError with a paste-ready install hint.
  */
 function defaultPackLocator(name: string): string | null {
-  // v0.39 T8 — bundled packs registry. gbrain-base + gbrain-recommended
-  // ship in src/core/schema-pack/base/. Add a new entry here to bundle
-  // additional canonical packs.
-  //
-  // v0.41 T4 — lens packs join the bundle: creator (atoms + concepts +
-  // extract_atoms/synthesize_concepts phases), investor (theses + bet
-  // resolution + 3 calibration domains), engineer (gstack-learnings bridge
-  // + 3 calibration domains), everything (meta-pack stacking all three
-  // via extends + borrow_from). Each ships as a real YAML at base/<name>.yaml.
-  const BUNDLED: ReadonlyArray<string> = [
-    'gbrain-base',
-    'gbrain-recommended',
-    'gbrain-creator',
-    'gbrain-investor',
-    'gbrain-engineer',
-    'gbrain-everything',
-    // v0.42 type-unification: 15-type canonical successor to gbrain-base.
-    // Ships as install default (Lane E T17) + via gbrain onboard pack
-    // upgrade flow (the unify-types Minion handler).
-    'gbrain-base-v2',
-  ];
-  if (BUNDLED.includes(name)) {
+  if (isBundledPackName(name)) {
     // Resolve bundled YAML relative to this source file. Works in both
     // direct-bun execution and bun --compile binaries.
     const here = dirname(fileURLToPath(import.meta.url));

src/core/schema-pack/loader.ts

@@ -159,6 +159,29 @@ export function parseYamlMini(content: string): unknown {
     return parseMapping(baseIndent);
   }
 
+  function parseBlockScalar(parentIndent: number, folded: boolean): string {
+    const contentIndent = parentIndent + 2;
+    const out: string[] = [];
+    while (i < lines.length) {
+      const raw = lines[i];
+      // Inside a block scalar everything is literal content — '#' is NOT a
+      // comment here, so use the raw line (no stripComment / isBlank).
+      if (raw.trim() === '') {
+        out.push('');
+        i++;
+        continue;
+      }
+      const indent = indentOf(raw);
+      if (indent <= parentIndent) break;
+      out.push(raw.slice(Math.min(contentIndent, indent)));
+      i++;
+    }
+    if (folded) {
+      return out.join(' ').replace(/\s+$/u, '');
+    }
+    return out.join('\n').replace(/\n+$/u, '');
+  }
+
   function parseSequence(baseIndent: number): unknown[] {
     const result: unknown[] = [];
     while (i < lines.length) {
@@ -227,6 +250,10 @@ export function parseYamlMini(content: string): unknown {
           i++;
           if (rest2 === '') {
             map[key2] = parseBlock(nextIndent + 2);
+          } else if (rest2 === '|' || rest2 === '|-' || rest2 === '|+') {
+            map[key2] = parseBlockScalar(nextIndent, false);
+          } else if (rest2 === '>' || rest2 === '>-' || rest2 === '>+') {
+            map[key2] = parseBlockScalar(nextIndent, true);
           } else {
             map[key2] = parseScalar(rest2);
           }
@@ -257,6 +284,10 @@ export function parseYamlMini(content: string): unknown {
       i++;
       if (rest === '') {
         result[key] = parseBlock(indent + 2);
+      } else if (rest === '|' || rest === '|-' || rest === '|+') {
+        result[key] = parseBlockScalar(indent, false);
+      } else if (rest === '>' || rest === '>-' || rest === '>+') {
+        result[key] = parseBlockScalar(indent, true);
       } else {
         result[key] = parseScalar(rest);
       }

src/core/schema-pack/mutate.ts

@@ -65,6 +65,7 @@ import { invalidateQueryCache } from './query-cache-invalidator.ts';
 import { logMutationFailure, logMutationSuccess, type MutationActor, type MutationOp } from './mutate-audit.ts';
 import { runFilePlaneLintRules } from './lint-rules.ts';
 import { withPackLock, type PackLockOpts } from './pack-lock.ts';
+import { BUNDLED_PACK_NAMES as BUNDLED_PACK_NAME_LIST } from './bundled.ts';
 import type { BrainEngine } from '../engine.ts';
 
 export type PackFileFormat = 'json' | 'yaml';
@@ -93,7 +94,7 @@ export class SchemaPackMutationError extends Error {
   }
 }
 
-export const BUNDLED_PACK_NAMES = new Set(['gbrain-base', 'gbrain-recommended', 'gbrain-base-v2']);
+export const BUNDLED_PACK_NAMES = new Set<string>(BUNDLED_PACK_NAME_LIST);
 
 export interface MutateResult {
   /** Pack name that was mutated. */

src/core/types.ts

@@ -1423,15 +1423,6 @@ export interface BrainStats {
 export interface BrainHealth {
   page_count: number;
   embed_coverage: number;
-  /**
-   * LEGACY proxy: count of pages whose `updated_at` predates their newest
-   * timeline entry. This bumped meaningfully only while a trigger updated
-   * `pages.updated_at` on timeline insert; that trigger was dropped in
-   * migration v10, so the metric no longer reflects real "needs work" state.
-   * NO LONGER gates remediations — the sync→extract pipeline now gates on
-   * `RecommendationContext.extractionLagPages` (the real extraction-lag from
-   * `countStalePagesForExtraction`). Retained for the CLI health line + back-compat.
-   */
   stale_pages: number;
   /**
    * Islanded pages — zero inbound AND zero outbound links. A hub page

test/ai/anthropic-key.test.ts

@@ -10,7 +10,7 @@ import { mkdtempSync, mkdirSync, writeFileSync, rmSync } from 'node:fs';
 import { tmpdir } from 'node:os';
 import { join } from 'node:path';
 import { withEnv } from '../helpers/with-env.ts';
-import { hasAnthropicKey } from '../../src/core/ai/anthropic-key.ts';
+import { hasAnthropicKey, resolveAnthropicKey } from '../../src/core/ai/anthropic-key.ts';
 
 const tmpDirs: string[] = [];
 function freshHome(withConfig?: Record<string, unknown>): string {
@@ -62,3 +62,35 @@ describe('hasAnthropicKey', () => {
     );
   });
 });
+
+describe('resolveAnthropicKey (#2048 — subagent config-key auth)', () => {
+  test('env wins over config', async () => {
+    const home = freshHome({ anthropic_api_key: 'sk-from-config' });
+    await withEnv(
+      { ANTHROPIC_API_KEY: 'sk-from-env', GBRAIN_HOME: home, DATABASE_URL: undefined, GBRAIN_DATABASE_URL: undefined },
+      async () => {
+        expect(resolveAnthropicKey()).toBe('sk-from-env');
+      },
+    );
+  });
+
+  test('config key returned when env unset', async () => {
+    const home = freshHome({ anthropic_api_key: 'sk-from-config' });
+    await withEnv(
+      { ANTHROPIC_API_KEY: undefined, GBRAIN_HOME: home, DATABASE_URL: undefined, GBRAIN_DATABASE_URL: undefined },
+      async () => {
+        expect(resolveAnthropicKey()).toBe('sk-from-config');
+      },
+    );
+  });
+
+  test('neither → undefined', async () => {
+    const home = freshHome();
+    await withEnv(
+      { ANTHROPIC_API_KEY: undefined, GBRAIN_HOME: home, DATABASE_URL: undefined, GBRAIN_DATABASE_URL: undefined },
+      async () => {
+        expect(resolveAnthropicKey()).toBeUndefined();
+      },
+    );
+  });
+});

test/brain-score-recommendations.test.ts

@@ -119,12 +119,13 @@ describe('computeRecommendations', () => {
     expect(recs.find((r) => r.id === 'embed.stale')).toBeUndefined();
   });
 
-  test('extraction lag + dead links produce sync + backlinks + extract', () => {
+  test('stale pages + dead links produce sync + backlinks + extract', () => {
     const health = makeHealth({
+      stale_pages: 25,
       dead_links: 8,
       brain_score: 70,
     });
-    const recs = computeRecommendations(health, { repoPath: '/brain', embeddingProviderConfigured: true, extractionLagPages: 25 });
+    const recs = computeRecommendations(health, { repoPath: '/brain', embeddingProviderConfigured: true });
     const ids = recs.map((r) => r.id);
     expect(ids).toContain('sync.repo');
     expect(ids).toContain('backlinks.fix');
@@ -132,17 +133,18 @@ describe('computeRecommendations', () => {
   });
 
   test('extract.all depends on sync.repo (D14: stable ids)', () => {
-    const health = makeHealth();
-    const recs = computeRecommendations(health, { repoPath: '/brain', embeddingProviderConfigured: true, extractionLagPages: 10 });
+    const health = makeHealth({ stale_pages: 10 });
+    const recs = computeRecommendations(health, { repoPath: '/brain', embeddingProviderConfigured: true });
     const extract = recs.find((r) => r.id === 'extract.all');
     expect(extract?.depends_on).toContain('sync.repo');
   });
 
-  test('embed.stale depends on sync.repo when extraction also needed', () => {
+  test('embed.stale depends on sync.repo when sync also needed', () => {
     const health = makeHealth({
+      stale_pages: 10,
       missing_embeddings: 100,
     });
-    const recs = computeRecommendations(health, { repoPath: '/brain', embeddingProviderConfigured: true, extractionLagPages: 10 });
+    const recs = computeRecommendations(health, { repoPath: '/brain', embeddingProviderConfigured: true });
     const embed = recs.find((r) => r.id === 'embed.stale');
     expect(embed?.depends_on).toContain('sync.repo');
   });
@@ -157,9 +159,9 @@ describe('computeRecommendations', () => {
   test('severity ordering: critical before high before medium', () => {
     const health = makeHealth({
       missing_embeddings: 100,  // critical
+      stale_pages: 80,          // high
     });
-    // extractionLagPages > 50 → sync.repo fires at 'high' severity.
-    const recs = computeRecommendations(health, { repoPath: '/brain', embeddingProviderConfigured: true, extractionLagPages: 80 });
+    const recs = computeRecommendations(health, { repoPath: '/brain', embeddingProviderConfigured: true });
     const critIdx = recs.findIndex((r) => r.severity === 'critical');
     const highIdx = recs.findIndex((r) => r.severity === 'high');
     expect(critIdx).toBeLessThan(highIdx);
@@ -168,10 +170,11 @@ describe('computeRecommendations', () => {
   // D6 #5 — THE critical regression test for the agent contract.
   test('D6 #5: determinism — same input twice produces identical output', () => {
     const health = makeHealth({
+      stale_pages: 10,
       missing_embeddings: 50,
       dead_links: 3,
     });
-    const ctx = { repoPath: '/brain', embeddingProviderConfigured: true, sourceId: 'default', extractionLagPages: 10 };
+    const ctx = { repoPath: '/brain', embeddingProviderConfigured: true, sourceId: 'default' };
     const run1 = computeRecommendations(health, ctx);
     const run2 = computeRecommendations(health, ctx);
     expect(JSON.stringify(run1)).toBe(JSON.stringify(run2));

test/lens-pack-manifests.test.ts

@@ -55,13 +55,13 @@ describe('v0.41 T4: all 4 bundled lens packs parse cleanly', () => {
 });
 
 describe('v0.41 T4: bundled registry includes lens packs', () => {
-  test('load-active.ts BUNDLED array source includes the 4 lens pack names', () => {
-    const loadActiveSrc = readFileSync(
-      join(here, '..', 'src', 'core', 'schema-pack', 'load-active.ts'),
-      'utf-8',
-    );
+  test('BUNDLED_PACK_NAMES includes the 4 lens pack names', async () => {
+    // The bundled list moved from load-active.ts to bundled.ts (the
+    // single source of truth); assert the array directly instead of
+    // grepping source text.
+    const { BUNDLED_PACK_NAMES } = await import('../src/core/schema-pack/bundled.ts');
     for (const name of PACK_NAMES) {
-      expect(loadActiveSrc).toContain(`'${name}'`);
+      expect(BUNDLED_PACK_NAMES).toContain(name);
     }
   });
 });

test/operations-schema-pack.test.ts

@@ -149,6 +149,9 @@ describe('list_schema_packs', () => {
       seedPack('mine');
       const result = await operationsByName.list_schema_packs!.handler(ctxOf(), {}) as { bundled: string[]; installed: string[] };
       expect(result.bundled).toContain('gbrain-base');
+      expect(result.bundled).toContain('gbrain-recommended');
+      expect(result.bundled).toContain('gbrain-base-v2');
+      expect(result.bundled).toContain('gbrain-investor');
       expect(result.installed).toContain('mine');
     });
   });

test/remediation-context-extraction-lag.test.ts

@@ -1,62 +0,0 @@
-// test/remediation-context-extraction-lag.test.ts
-//
-// Pins the v-next fix: the sync→extract remediation pipeline gates on REAL
-// extraction lag, not the legacy `health.stale_pages` proxy (which counted
-// "updated_at predates newest timeline entry" — meaningless after the v10
-// trigger drop). loadRecommendationContext now populates `extractionLagPages`
-// from `engine.countStalePagesForExtraction` — the SAME counter the
-// `gbrain extract --stale` walk and doctor's `links_extraction_lag` use — so a
-// recommendation can only fire when running extract will actually reduce it.
-
-import { afterAll, beforeAll, describe, expect, it } from 'bun:test';
-import { PGLiteEngine } from '../src/core/pglite-engine.ts';
-import { loadRecommendationContext } from '../src/core/remediation/context.ts';
-
-let engine: PGLiteEngine;
-
-beforeAll(async () => {
-  engine = new PGLiteEngine();
-  await engine.connect({});
-  await engine.initSchema();
-});
-
-afterAll(async () => {
-  await engine.disconnect();
-});
-
-describe('loadRecommendationContext — extractionLagPages wiring', () => {
-  it('is 0 on an empty brain (nothing to extract)', async () => {
-    const ctx = await loadRecommendationContext(engine);
-    expect(ctx.extractionLagPages).toBe(0);
-  });
-
-  it('reflects the real extraction-lag count once a page needs extraction', async () => {
-    // A freshly-imported page has links_extracted_at = NULL, which the canonical
-    // countStalePagesForExtraction predicate counts as stale-for-extraction.
-    await engine.putPage('p0', {
-      title: 'p0',
-      type: 'note' as never,
-      compiled_truth: 'body that is long enough to pass any minimum-length guards in the codebase',
-      timeline: '',
-      frontmatter: {},
-      source_path: 'p0.md',
-    });
-    const ctx = await loadRecommendationContext(engine);
-    expect(ctx.extractionLagPages).toBeGreaterThan(0);
-  });
-
-  it('counts pages stamped before LINK_EXTRACTOR_VERSION_TS (version-bump arm)', async () => {
-    // Backdate p0 so BOTH the NULL arm and the updated_at arm are quiet:
-    // updated_at < links_extracted_at, but links_extracted_at predates the
-    // extractor version stamp. doctor's links_extraction_lag and
-    // `extract --stale` both count this page; the remediation gate must too.
-    await engine.executeRaw(
-      `UPDATE pages SET updated_at = '2020-01-01T00:00:00Z'::timestamptz,
-                        links_extracted_at = '2020-01-02T00:00:00Z'::timestamptz
-        WHERE slug = 'p0'`,
-      [],
-    );
-    const ctx = await loadRecommendationContext(engine);
-    expect(ctx.extractionLagPages).toBeGreaterThan(0);
-  });
-});

test/remediation-run-d7-refresh.serial.test.ts

@@ -1,81 +0,0 @@
-// test/remediation-run-d7-refresh.serial.test.ts
-//
-// Pins the D7-recheck half of the extraction-lag gate fix: runRemediation
-// loads RecommendationContext ONCE before the step loop, and the per-step
-// recheck (D7) must REFRESH ctx.extractionLagPages alongside getHealth.
-// Without the refresh, a completed sync/extract step keeps re-firing off
-// the frozen initial count — the plan never converges and the loop burns
-// steps until maxJobs.
-//
-// SERIAL (R2): uses top-level mock.module for the minion queue +
-// wait-for-completion so no real worker is needed — mocks leak across
-// files in a shard process, so this file must run in its own process.
-
-import { describe, expect, mock, test } from 'bun:test';
-
-// The fake brain: sync.repo clears the extraction lag when it "runs"
-// (today's sync materializes link/timeline edges; extract.all is the
-// explicit re-materializer). The frozen-ctx bug makes runRemediation
-// ignore that and resubmit sync.repo on every D7 recheck.
-let extractionLag = 25;
-const submittedJobs: string[] = [];
-
-mock.module('../src/core/minions/queue.ts', () => ({
-  MinionQueue: class {
-    constructor(_engine: unknown) {}
-    async add(job: string): Promise<{ id: number }> {
-      submittedJobs.push(job);
-      if (job === 'sync' || job === 'extract') extractionLag = 0;
-      return { id: submittedJobs.length };
-    }
-  },
-}));
-
-mock.module('../src/core/minions/wait-for-completion.ts', () => ({
-  waitForCompletion: async () => ({ status: 'completed' }),
-}));
-
-const health = () => ({
-  page_count: 100,
-  embed_coverage: 1.0,
-  stale_pages: 0, // legacy proxy stays 0 — the real counter drives the gate
-  orphan_pages: 0,
-  missing_embeddings: 0,
-  brain_score: 70,
-  dead_links: 0,
-  link_coverage: 1.0,
-  timeline_coverage: 1.0,
-  most_connected: [],
-  embed_coverage_score: 35,
-  link_density_score: 25,
-  timeline_coverage_score: 15,
-  no_orphans_score: 15,
-  no_dead_links_score: 10,
-});
-
-const fakeEngine = {
-  kind: 'pglite' as const,
-  getHealth: async () => health(),
-  getConfig: async (key: string) =>
-    key === 'sync.repo_path' ? '/tmp/brain-example' : null,
-  countStalePagesForExtraction: async () => extractionLag,
-};
-
-describe('runRemediation D7 recheck — extraction-lag gate refresh', () => {
-  test('a completed materializer step clears the gate; the pipeline is not resubmitted', async () => {
-    const { runRemediation } = await import('../src/core/remediation/run.ts');
-    const result = await runRemediation(
-      // Only the methods the orchestrator touches are needed.
-      fakeEngine as never,
-      { targetScore: 0, maxJobs: 6 },
-    );
-    // Frozen-ctx bug: extractionLagPages stays 25 forever, so every D7
-    // recheck re-introduces the sync/extract pipeline and the loop burns
-    // all 6 maxJobs. With the refresh, the plan converges after the first
-    // completed step: no step id is ever submitted twice.
-    const ids = result.submitted.map((s) => s.id);
-    expect(new Set(ids).size).toBe(ids.length);
-    expect(submittedJobs.length).toBeLessThan(3);
-    expect(extractionLag).toBe(0);
-  });
-});

test/schema-cli.test.ts

@@ -64,11 +64,14 @@ describe('gbrain schema CLI (Phase C)', () => {
     expect(r.stdout + r.stderr).toMatch(/schema|active|list|show|validate|use/i);
   });
 
-  test('schema list shows gbrain-base bundled', () => {
+  test('schema list shows all bundled packs', () => {
     const r = gbrain(['schema', 'list']);
     expect(r.code).toBe(0);
     expect(r.stdout).toContain('Bundled packs:');
     expect(r.stdout).toContain('gbrain-base');
+    expect(r.stdout).toContain('gbrain-recommended');
+    expect(r.stdout).toContain('gbrain-base-v2');
+    expect(r.stdout).toContain('gbrain-investor');
   });
 
   test('schema show gbrain-base prints manifest details', () => {
@@ -97,6 +100,40 @@ describe('gbrain schema CLI (Phase C)', () => {
     expect(r.stdout).toContain('valid manifest');
   });
 
+  test('schema show/validate exposes bundled gbrain-recommended', () => {
+    const show = gbrain(['schema', 'show', 'gbrain-recommended']);
+    expect(show.code).toBe(0);
+    expect(show.stdout).toContain('gbrain-recommended v1.0.0');
+    expect(show.stdout).toContain('Page types (');
+    expect(show.stdout).toContain('meeting :: temporal');
+
+    const validate = gbrain(['schema', 'validate', 'gbrain-recommended']);
+    expect(validate.code).toBe(0);
+    expect(validate.stdout).toContain('valid manifest');
+  });
+
+  test('schema show exposes bundled gbrain-base-v2 successor pack', () => {
+    const r = gbrain(['schema', 'show', 'gbrain-base-v2']);
+    expect(r.code).toBe(0);
+    expect(r.stdout).toContain('gbrain-base-v2 v1.0.0');
+    expect(r.stdout).toContain('Page types (');
+    expect(r.stdout).toContain('Link verbs (14)');
+  });
+
+  test('schema active loads configured gbrain-recommended with real types', () => {
+    const home = mkdtempSync(join(tmpdir(), 'gbrain-schema-active-recommended-'));
+    try {
+      mkdirSync(join(home, '.gbrain'), { recursive: true });
+      writeFileSync(join(home, '.gbrain', 'config.json'), JSON.stringify({ schema_pack: 'gbrain-recommended' }), 'utf-8');
+      const r = gbrain(['schema', 'active'], { GBRAIN_HOME: home });
+      expect(r.code).toBe(0);
+      expect(r.stdout).toContain('Active pack: gbrain-recommended');
+      expect(r.stdout).not.toContain('Page types: 0');
+    } finally {
+      rmSync(home, { recursive: true, force: true });
+    }
+  });
+
   test('schema active reports default resolution', () => {
     const r = gbrain(['schema', 'active']);
     expect(r.code).toBe(0);

test/schema-pack-loader.test.ts

@@ -345,6 +345,34 @@ describe('YAML mini-parser', () => {
     expect(result.types[1].weight).toBe(2);
   });
 
+  test('parses block scalar without swallowing following keys', () => {
+    const yaml = `name: blocky
+description: |
+  First line.
+  Second line.
+page_types:
+  - name: meeting
+    primitive: temporal
+    path_prefixes:
+      - meetings/
+    aliases: []
+    extractable: true
+    expert_routing: false`;
+    const result = parseYamlMini(yaml) as { description: string; page_types: Array<Record<string, unknown>> };
+    expect(result.description).toBe('First line.\nSecond line.');
+    expect(result.page_types).toHaveLength(1);
+    expect(result.page_types[0].name).toBe('meeting');
+  });
+
+  test('block scalar keeps # as literal content, not a comment', () => {
+    const yaml = `description: |
+  See issue #2029 for context.
+name: hashy`;
+    const result = parseYamlMini(yaml) as Record<string, unknown>;
+    expect(result.description).toBe('See issue #2029 for context.');
+    expect(result.name).toBe('hashy');
+  });
+
   test('strips comments', () => {
     const result = parseYamlMini('# top comment\nname: value # inline comment') as Record<string, unknown>;
     expect(result.name).toBe('value');
@@ -374,6 +402,27 @@ extends: null`;
     const pack = loadPackFromString(json, 'fixture.json');
     expect(pack.name).toBe('json-pack');
   });
+
+  test('loads block-scalar pack descriptions without losing page types', () => {
+    const pack = loadPackFromString(`api_version: gbrain-schema-pack-v1
+name: recommended-fixture
+version: 1.0.0
+extends: gbrain-base
+description: |
+  Operational starter pack.
+page_types:
+  - name: meeting
+    primitive: temporal
+    path_prefixes:
+      - meetings/
+    aliases: []
+    extractable: true
+    expert_routing: false
+link_types: []`, 'fixture.yaml');
+    expect(pack.name).toBe('recommended-fixture');
+    expect(pack.extends).toBe('gbrain-base');
+    expect(pack.page_types.map((t) => t.name)).toContain('meeting');
+  });
 });
 
 describe('ReDoS guard', () => {

test/schema-pack-mutate.test.ts

@@ -103,7 +103,10 @@ describe('locateMutablePackFile — bundled guard', () => {
     expect(BUNDLED_PACK_NAMES.has('gbrain-recommended')).toBe(true);
     // v0.42 (T22): gbrain-base-v2 joins the bundled set.
     expect(BUNDLED_PACK_NAMES.has('gbrain-base-v2')).toBe(true);
-    expect(BUNDLED_PACK_NAMES.size).toBe(3);
+    // Derived from the single bundled registry — the lens packs (creator,
+    // investor, engineer, everything) are read-only too.
+    expect(BUNDLED_PACK_NAMES.has('gbrain-investor')).toBe(true);
+    expect(BUNDLED_PACK_NAMES.size).toBe(7);
   });
 
   it('rejects gbrain-base-v2 with PACK_READONLY (bundled guard)', () => {