fix(schema): block scalars keep '#' as literal content

Inside a YAML block scalar '#' is content, not a comment; parseBlockScalar
was routing lines through stripComment/isBlank, truncating descriptions
like 'see issue #2029' and blanking comment-looking lines. Use the raw
line inside the scalar. Adds a pinning test.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

src/commands/extract.ts

@@ -1651,7 +1651,7 @@ async function extractTimelineFromDB(
  * make re-extraction idempotent). EVERY processed page is stamped, including
  * zero-link pages — they WERE processed.
  */
-export async function extractStaleFromDB(
+async function extractStaleFromDB(
   engine: BrainEngine,
   opts: {
     dryRun: boolean;

src/commands/jobs.ts

@@ -1479,31 +1479,7 @@ export async function registerBuiltinHandlers(
       embedSkipReason = 'auto_embed_disabled';
     }
 
-    // #2849: large-sync extract deferral follow-up. performSync skips inline
-    // link/timeline extraction when totalChanges > 100, leaving
-    // links_extracted_at unstamped. A standalone sync job (webhook push,
-    // sync trigger) has no autopilot extract phase behind it, so the pages
-    // would stay extraction-stale until a manual `gbrain extract --stale`.
-    // Queue a source-scoped stale sweep instead. Best-effort + idempotent:
-    // a duplicate sweep finds 0 stale pages and no-ops.
-    let extractJobId: number | null = null;
-    if (result.extractDeferred) {
-      try {
-        const { MinionQueue } = await import('../core/minions/queue.ts');
-        const queue = new MinionQueue(engine);
-        const followUp = await queue.add(
-          'extract',
-          { stale: true, ...(sourceId ? { sourceId } : {}) },
-          {
-            idempotency_key: `sync-extract-stale:${sourceId ?? 'default'}:${Math.floor(Date.now() / 30_000)}`,
-            maxWaiting: 1,
-          },
-        );
-        extractJobId = followUp.id;
-      } catch { /* best-effort: extract --stale sweeps it later */ }
-    }
-
-    return { ...result, embed_job_id: embedJobId, embed_skip_reason: embedSkipReason, extract_stale_job_id: extractJobId };
+    return { ...result, embed_job_id: embedJobId, embed_skip_reason: embedSkipReason };
   });
 
   registerBuiltinJob(worker, engine, 'embed', async (job) => {
@@ -1676,20 +1652,6 @@ export async function registerBuiltinHandlers(
   });
 
   worker.register('extract', async (job) => {
-    // #2849: stale-sweep mode — the sync handler's large-sync deferral
-    // follow-up. DB-source (reads page content from the DB, so it runs on
-    // checkout-less brains), source-scopable, idempotent. Same core as
-    // `gbrain extract --stale`.
-    if (job.data.stale === true) {
-      const { extractStaleFromDB } = await import('./extract.ts');
-      return await extractStaleFromDB(engine, {
-        dryRun: !!job.data.dryRun,
-        jsonMode: false,
-        includeFrontmatter: false,
-        sourceIdFilter: typeof job.data.sourceId === 'string' ? job.data.sourceId : undefined,
-        catchUp: false,
-      });
-    }
     const { runExtractCore } = await import('./extract.ts');
     const mode = (typeof job.data.mode === 'string' && ['links', 'timeline', 'all'].includes(job.data.mode))
       ? (job.data.mode as 'links' | 'timeline' | 'all')

src/commands/serve-http.ts

@@ -2146,13 +2146,8 @@ export async function runServeHttp(engine: BrainEngine, options: ServeHttpOption
   //     Other event types (ping, pull_request, etc.) return 202 'ignored'
   //     so GitHub doesn't retry.
   // D15.5: HMAC compare uses the shared safeHexEqual helper.
-  // D18: submits 'sync' job with extraction + auto_embed_backfill enabled and
-  //     priority -10 (above autopilot's 0). noExtract:false opts normal
-  //     incremental pushes into sync's inline link/timeline extraction (#2849
-  //     — the standalone sync handler defaults noExtract to TRUE, which left
-  //     webhook-imported pages permanently stale). Large (>100 file) pushes
-  //     defer inline extract; the sync handler queues an extract --stale
-  //     follow-up job for that branch.
+  // D18: submits 'sync' job with auto_embed_backfill=true and priority -10
+  //     (above autopilot's 0).
   // ---------------------------------------------------------------------------
   const githubWebhookLimiter = rateLimit({
     windowMs: 60_000,
@@ -2272,7 +2267,6 @@ export async function runServeHttp(engine: BrainEngine, options: ServeHttpOption
           'sync',
           {
             sourceId: source.id,
-            noExtract: false,
             auto_embed_backfill: true,
             embed_reason: 'webhook',
           },

src/commands/sync.ts

@@ -222,14 +222,6 @@ export interface SyncResult {
    * everything," the exact misdiagnosis in the #1794 recurrence report.
    */
   bankedFiles?: number;
-  /**
-   * #2849: true when extraction was REQUESTED (noExtract false) but this sync
-   * skipped inline link/timeline extraction because totalChanges > 100 (the
-   * #1794 large-sync deferral). links_extracted_at stays unstamped for the
-   * imported pages. The standalone `sync` job handler queues a source-scoped
-   * `extract --stale` follow-up when set; CLI runs print the manual hint.
-   */
-  extractDeferred?: boolean;
 }
 
 /**
@@ -1387,10 +1379,6 @@ See also:
     {
       sourceId: sourceIdArg,
       repoPath: source.local_path,
-      // #2849: opt in to inline extraction — the standalone sync handler
-      // defaults noExtract to TRUE (dedupe for doctor's [sync, extract]
-      // remediation plan), which would leave triggered syncs extraction-stale.
-      noExtract: false,
       auto_embed_backfill: true,
       embed_reason: 'sync_trigger',
     },
@@ -3299,16 +3287,11 @@ async function performSyncInner(engine: BrainEngine, opts: SyncOpts): Promise<Sy
   // the stale sweep scans the whole source, so banked-across-runs pages are
   // covered regardless.
   const extractOpts = opts.sourceId ? { sourceId: opts.sourceId } : undefined;
-  let extractDeferred = false;
   if (!opts.noExtract && totalChanges > 100 && pagesAffected.length > 0) {
-    // #2849: surface the deferral to callers. A standalone sync job (webhook
-    // push, sync trigger) has no autopilot extract phase behind it, so the
-    // job handler queues an `extract --stale` follow-up off this flag.
-    extractDeferred = true;
     slog(
       `  Large sync: deferring link/timeline extraction. ` +
       `Run 'gbrain extract --stale${opts.sourceId ? ` --source-id ${opts.sourceId}` : ''}' ` +
-      `(sync jobs queue this follow-up automatically).`,
+      `(or let the autopilot cycle's extract phase sweep it).`,
     );
   }
   if (!opts.noExtract && totalChanges <= 100 && pagesAffected.length > 0) {
@@ -3417,7 +3400,6 @@ async function performSyncInner(engine: BrainEngine, opts: SyncOpts): Promise<Sy
     chunksCreated,
     embedded,
     pagesAffected,
-    extractDeferred,
   };
 }
 

src/core/ai/anthropic-key.ts

@@ -18,12 +18,22 @@
 import { loadConfig } from '../config.ts';
 
 export function hasAnthropicKey(): boolean {
-  if (process.env.ANTHROPIC_API_KEY) return true;
+  return resolveAnthropicKey() !== undefined;
+}
+
+/**
+ * Resolve the actual key value: env first, then the gbrain config file.
+ * Callers constructing an Anthropic client directly (e.g. the legacy
+ * subagent path) must pass this as `apiKey` — a bare `new Anthropic()`
+ * only sees env, so launchd/MCP workers with config-stored keys fail.
+ */
+export function resolveAnthropicKey(): string | undefined {
+  if (process.env.ANTHROPIC_API_KEY) return process.env.ANTHROPIC_API_KEY;
   try {
     const cfg = loadConfig();
-    if (cfg?.anthropic_api_key) return true;
+    if (cfg?.anthropic_api_key) return cfg.anthropic_api_key;
   } catch {
     // loadConfig may throw on first-run installs; treat as no key available.
   }
-  return false;
+  return undefined;
 }

src/core/minions/handlers/subagent.ts

@@ -48,6 +48,7 @@ import {
   logSubagentHeartbeat,
 } from './subagent-audit.ts';
 import { resolveModel, isAnthropicProvider, TIER_DEFAULTS } from '../../model-config.ts';
+import { resolveAnthropicKey } from '../../ai/anthropic-key.ts';
 import { buildSystemPrompt, DEFAULT_SUBAGENT_SYSTEM } from '../system-prompt.ts';
 import { toolLoop as gatewayToolLoop } from '../../ai/gateway.ts';
 import type { ChatToolDef, ChatMessage, ChatBlock, ChatResult, ToolHandler } from '../../ai/gateway.ts';
@@ -186,7 +187,10 @@ export function makeSubagentHandler(deps: SubagentDeps) {
   // lives at sdk.messages.create. Assigning sdk.messages directly gets the
   // right object; JS method-call semantics preserve `this` at the call
   // site (subagent.ts invokes client.create(...) with client === sdk.messages).
-  const makeAnthropic = deps.makeAnthropic ?? (() => new Anthropic());
+  // Resolve the key env-first, then config (anthropic_api_key) — a bare
+  // new Anthropic() only reads env, so launchd/MCP workers whose key lives
+  // in the gbrain config file would fail auth (#2048).
+  const makeAnthropic = deps.makeAnthropic ?? (() => new Anthropic({ apiKey: resolveAnthropicKey() }));
   const client: MessagesClient = deps.client ?? makeAnthropic().messages;
   const config = deps.config ?? loadConfig() ?? ({ engine: 'postgres' } as GBrainConfig);
   const rateLeaseKey = deps.rateLeaseKey ?? DEFAULT_RATE_KEY;

src/core/operations.ts

@@ -4562,7 +4562,8 @@ const list_schema_packs: Operation = {
     const { existsSync, readdirSync } = await import('node:fs');
     const { join } = await import('node:path');
     const { gbrainPath } = await import('./config.ts');
-    const bundled = ['gbrain-base', 'gbrain-recommended'];
+    const { BUNDLED_PACK_NAMES } = await import('./schema-pack/bundled.ts');
+    const bundled = [...BUNDLED_PACK_NAMES];
     const installedDir = gbrainPath('schema-packs');
     const installed: string[] = [];
     if (existsSync(installedDir)) {

src/core/schema-pack/bundled.ts

@@ -0,0 +1,24 @@
+// Bundled schema-pack registry — single source of truth for the packs that
+// ship in src/core/schema-pack/base/. Keep every bundled-pack consumer
+// (CLI/MCP inspection, active-pack loading, mutation guards, upgrade
+// discovery) on this one list so they cannot drift.
+//
+// v0.39 T8 — gbrain-base + gbrain-recommended.
+// v0.41 T4 — lens packs: creator, investor, engineer, everything (meta-pack).
+// v0.42 type-unification — gbrain-base-v2, the 15-type canonical successor.
+
+export const BUNDLED_PACK_NAMES = [
+  'gbrain-base',
+  'gbrain-recommended',
+  'gbrain-creator',
+  'gbrain-investor',
+  'gbrain-engineer',
+  'gbrain-everything',
+  'gbrain-base-v2',
+] as const;
+
+export type BundledPackName = typeof BUNDLED_PACK_NAMES[number];
+
+export function isBundledPackName(name: string): name is BundledPackName {
+  return (BUNDLED_PACK_NAMES as readonly string[]).includes(name);
+}

src/core/schema-pack/load-active.ts

@@ -37,6 +37,7 @@ import {
   type ResolutionInput,
   type ResolutionResult,
 } from './registry.ts';
+import { isBundledPackName } from './bundled.ts';
 
 /**
  * Inputs the caller (operations.ts handler / engine query path) provides.
@@ -92,28 +93,7 @@ export function _resetPackLocatorForTests(): void {
  * throwing UnknownPackError with a paste-ready install hint.
  */
 function defaultPackLocator(name: string): string | null {
-  // v0.39 T8 — bundled packs registry. gbrain-base + gbrain-recommended
-  // ship in src/core/schema-pack/base/. Add a new entry here to bundle
-  // additional canonical packs.
-  //
-  // v0.41 T4 — lens packs join the bundle: creator (atoms + concepts +
-  // extract_atoms/synthesize_concepts phases), investor (theses + bet
-  // resolution + 3 calibration domains), engineer (gstack-learnings bridge
-  // + 3 calibration domains), everything (meta-pack stacking all three
-  // via extends + borrow_from). Each ships as a real YAML at base/<name>.yaml.
-  const BUNDLED: ReadonlyArray<string> = [
-    'gbrain-base',
-    'gbrain-recommended',
-    'gbrain-creator',
-    'gbrain-investor',
-    'gbrain-engineer',
-    'gbrain-everything',
-    // v0.42 type-unification: 15-type canonical successor to gbrain-base.
-    // Ships as install default (Lane E T17) + via gbrain onboard pack
-    // upgrade flow (the unify-types Minion handler).
-    'gbrain-base-v2',
-  ];
-  if (BUNDLED.includes(name)) {
+  if (isBundledPackName(name)) {
     // Resolve bundled YAML relative to this source file. Works in both
     // direct-bun execution and bun --compile binaries.
     const here = dirname(fileURLToPath(import.meta.url));

src/core/schema-pack/loader.ts

@@ -159,6 +159,29 @@ export function parseYamlMini(content: string): unknown {
     return parseMapping(baseIndent);
   }
 
+  function parseBlockScalar(parentIndent: number, folded: boolean): string {
+    const contentIndent = parentIndent + 2;
+    const out: string[] = [];
+    while (i < lines.length) {
+      const raw = lines[i];
+      // Inside a block scalar everything is literal content — '#' is NOT a
+      // comment here, so use the raw line (no stripComment / isBlank).
+      if (raw.trim() === '') {
+        out.push('');
+        i++;
+        continue;
+      }
+      const indent = indentOf(raw);
+      if (indent <= parentIndent) break;
+      out.push(raw.slice(Math.min(contentIndent, indent)));
+      i++;
+    }
+    if (folded) {
+      return out.join(' ').replace(/\s+$/u, '');
+    }
+    return out.join('\n').replace(/\n+$/u, '');
+  }
+
   function parseSequence(baseIndent: number): unknown[] {
     const result: unknown[] = [];
     while (i < lines.length) {
@@ -227,6 +250,10 @@ export function parseYamlMini(content: string): unknown {
           i++;
           if (rest2 === '') {
             map[key2] = parseBlock(nextIndent + 2);
+          } else if (rest2 === '|' || rest2 === '|-' || rest2 === '|+') {
+            map[key2] = parseBlockScalar(nextIndent, false);
+          } else if (rest2 === '>' || rest2 === '>-' || rest2 === '>+') {
+            map[key2] = parseBlockScalar(nextIndent, true);
           } else {
             map[key2] = parseScalar(rest2);
           }
@@ -257,6 +284,10 @@ export function parseYamlMini(content: string): unknown {
       i++;
       if (rest === '') {
         result[key] = parseBlock(indent + 2);
+      } else if (rest === '|' || rest === '|-' || rest === '|+') {
+        result[key] = parseBlockScalar(indent, false);
+      } else if (rest === '>' || rest === '>-' || rest === '>+') {
+        result[key] = parseBlockScalar(indent, true);
       } else {
         result[key] = parseScalar(rest);
       }

src/core/schema-pack/mutate.ts

@@ -65,6 +65,7 @@ import { invalidateQueryCache } from './query-cache-invalidator.ts';
 import { logMutationFailure, logMutationSuccess, type MutationActor, type MutationOp } from './mutate-audit.ts';
 import { runFilePlaneLintRules } from './lint-rules.ts';
 import { withPackLock, type PackLockOpts } from './pack-lock.ts';
+import { BUNDLED_PACK_NAMES as BUNDLED_PACK_NAME_LIST } from './bundled.ts';
 import type { BrainEngine } from '../engine.ts';
 
 export type PackFileFormat = 'json' | 'yaml';
@@ -93,7 +94,7 @@ export class SchemaPackMutationError extends Error {
   }
 }
 
-export const BUNDLED_PACK_NAMES = new Set(['gbrain-base', 'gbrain-recommended', 'gbrain-base-v2']);
+export const BUNDLED_PACK_NAMES = new Set<string>(BUNDLED_PACK_NAME_LIST);
 
 export interface MutateResult {
   /** Pack name that was mutated. */

test/ai/anthropic-key.test.ts

@@ -10,7 +10,7 @@ import { mkdtempSync, mkdirSync, writeFileSync, rmSync } from 'node:fs';
 import { tmpdir } from 'node:os';
 import { join } from 'node:path';
 import { withEnv } from '../helpers/with-env.ts';
-import { hasAnthropicKey } from '../../src/core/ai/anthropic-key.ts';
+import { hasAnthropicKey, resolveAnthropicKey } from '../../src/core/ai/anthropic-key.ts';
 
 const tmpDirs: string[] = [];
 function freshHome(withConfig?: Record<string, unknown>): string {
@@ -62,3 +62,35 @@ describe('hasAnthropicKey', () => {
     );
   });
 });
+
+describe('resolveAnthropicKey (#2048 — subagent config-key auth)', () => {
+  test('env wins over config', async () => {
+    const home = freshHome({ anthropic_api_key: 'sk-from-config' });
+    await withEnv(
+      { ANTHROPIC_API_KEY: 'sk-from-env', GBRAIN_HOME: home, DATABASE_URL: undefined, GBRAIN_DATABASE_URL: undefined },
+      async () => {
+        expect(resolveAnthropicKey()).toBe('sk-from-env');
+      },
+    );
+  });
+
+  test('config key returned when env unset', async () => {
+    const home = freshHome({ anthropic_api_key: 'sk-from-config' });
+    await withEnv(
+      { ANTHROPIC_API_KEY: undefined, GBRAIN_HOME: home, DATABASE_URL: undefined, GBRAIN_DATABASE_URL: undefined },
+      async () => {
+        expect(resolveAnthropicKey()).toBe('sk-from-config');
+      },
+    );
+  });
+
+  test('neither → undefined', async () => {
+    const home = freshHome();
+    await withEnv(
+      { ANTHROPIC_API_KEY: undefined, GBRAIN_HOME: home, DATABASE_URL: undefined, GBRAIN_DATABASE_URL: undefined },
+      async () => {
+        expect(resolveAnthropicKey()).toBeUndefined();
+      },
+    );
+  });
+});

test/lens-pack-manifests.test.ts

@@ -55,13 +55,13 @@ describe('v0.41 T4: all 4 bundled lens packs parse cleanly', () => {
 });
 
 describe('v0.41 T4: bundled registry includes lens packs', () => {
-  test('load-active.ts BUNDLED array source includes the 4 lens pack names', () => {
-    const loadActiveSrc = readFileSync(
-      join(here, '..', 'src', 'core', 'schema-pack', 'load-active.ts'),
-      'utf-8',
-    );
+  test('BUNDLED_PACK_NAMES includes the 4 lens pack names', async () => {
+    // The bundled list moved from load-active.ts to bundled.ts (the
+    // single source of truth); assert the array directly instead of
+    // grepping source text.
+    const { BUNDLED_PACK_NAMES } = await import('../src/core/schema-pack/bundled.ts');
     for (const name of PACK_NAMES) {
-      expect(loadActiveSrc).toContain(`'${name}'`);
+      expect(BUNDLED_PACK_NAMES).toContain(name);
     }
   });
 });

test/operations-schema-pack.test.ts

@@ -149,6 +149,9 @@ describe('list_schema_packs', () => {
       seedPack('mine');
       const result = await operationsByName.list_schema_packs!.handler(ctxOf(), {}) as { bundled: string[]; installed: string[] };
       expect(result.bundled).toContain('gbrain-base');
+      expect(result.bundled).toContain('gbrain-recommended');
+      expect(result.bundled).toContain('gbrain-base-v2');
+      expect(result.bundled).toContain('gbrain-investor');
       expect(result.installed).toContain('mine');
     });
   });

test/schema-cli.test.ts

@@ -64,11 +64,14 @@ describe('gbrain schema CLI (Phase C)', () => {
     expect(r.stdout + r.stderr).toMatch(/schema|active|list|show|validate|use/i);
   });
 
-  test('schema list shows gbrain-base bundled', () => {
+  test('schema list shows all bundled packs', () => {
     const r = gbrain(['schema', 'list']);
     expect(r.code).toBe(0);
     expect(r.stdout).toContain('Bundled packs:');
     expect(r.stdout).toContain('gbrain-base');
+    expect(r.stdout).toContain('gbrain-recommended');
+    expect(r.stdout).toContain('gbrain-base-v2');
+    expect(r.stdout).toContain('gbrain-investor');
   });
 
   test('schema show gbrain-base prints manifest details', () => {
@@ -97,6 +100,40 @@ describe('gbrain schema CLI (Phase C)', () => {
     expect(r.stdout).toContain('valid manifest');
   });
 
+  test('schema show/validate exposes bundled gbrain-recommended', () => {
+    const show = gbrain(['schema', 'show', 'gbrain-recommended']);
+    expect(show.code).toBe(0);
+    expect(show.stdout).toContain('gbrain-recommended v1.0.0');
+    expect(show.stdout).toContain('Page types (');
+    expect(show.stdout).toContain('meeting :: temporal');
+
+    const validate = gbrain(['schema', 'validate', 'gbrain-recommended']);
+    expect(validate.code).toBe(0);
+    expect(validate.stdout).toContain('valid manifest');
+  });
+
+  test('schema show exposes bundled gbrain-base-v2 successor pack', () => {
+    const r = gbrain(['schema', 'show', 'gbrain-base-v2']);
+    expect(r.code).toBe(0);
+    expect(r.stdout).toContain('gbrain-base-v2 v1.0.0');
+    expect(r.stdout).toContain('Page types (');
+    expect(r.stdout).toContain('Link verbs (14)');
+  });
+
+  test('schema active loads configured gbrain-recommended with real types', () => {
+    const home = mkdtempSync(join(tmpdir(), 'gbrain-schema-active-recommended-'));
+    try {
+      mkdirSync(join(home, '.gbrain'), { recursive: true });
+      writeFileSync(join(home, '.gbrain', 'config.json'), JSON.stringify({ schema_pack: 'gbrain-recommended' }), 'utf-8');
+      const r = gbrain(['schema', 'active'], { GBRAIN_HOME: home });
+      expect(r.code).toBe(0);
+      expect(r.stdout).toContain('Active pack: gbrain-recommended');
+      expect(r.stdout).not.toContain('Page types: 0');
+    } finally {
+      rmSync(home, { recursive: true, force: true });
+    }
+  });
+
   test('schema active reports default resolution', () => {
     const r = gbrain(['schema', 'active']);
     expect(r.code).toBe(0);

test/schema-pack-loader.test.ts

@@ -345,6 +345,34 @@ describe('YAML mini-parser', () => {
     expect(result.types[1].weight).toBe(2);
   });
 
+  test('parses block scalar without swallowing following keys', () => {
+    const yaml = `name: blocky
+description: |
+  First line.
+  Second line.
+page_types:
+  - name: meeting
+    primitive: temporal
+    path_prefixes:
+      - meetings/
+    aliases: []
+    extractable: true
+    expert_routing: false`;
+    const result = parseYamlMini(yaml) as { description: string; page_types: Array<Record<string, unknown>> };
+    expect(result.description).toBe('First line.\nSecond line.');
+    expect(result.page_types).toHaveLength(1);
+    expect(result.page_types[0].name).toBe('meeting');
+  });
+
+  test('block scalar keeps # as literal content, not a comment', () => {
+    const yaml = `description: |
+  See issue #2029 for context.
+name: hashy`;
+    const result = parseYamlMini(yaml) as Record<string, unknown>;
+    expect(result.description).toBe('See issue #2029 for context.');
+    expect(result.name).toBe('hashy');
+  });
+
   test('strips comments', () => {
     const result = parseYamlMini('# top comment\nname: value # inline comment') as Record<string, unknown>;
     expect(result.name).toBe('value');
@@ -374,6 +402,27 @@ extends: null`;
     const pack = loadPackFromString(json, 'fixture.json');
     expect(pack.name).toBe('json-pack');
   });
+
+  test('loads block-scalar pack descriptions without losing page types', () => {
+    const pack = loadPackFromString(`api_version: gbrain-schema-pack-v1
+name: recommended-fixture
+version: 1.0.0
+extends: gbrain-base
+description: |
+  Operational starter pack.
+page_types:
+  - name: meeting
+    primitive: temporal
+    path_prefixes:
+      - meetings/
+    aliases: []
+    extractable: true
+    expert_routing: false
+link_types: []`, 'fixture.yaml');
+    expect(pack.name).toBe('recommended-fixture');
+    expect(pack.extends).toBe('gbrain-base');
+    expect(pack.page_types.map((t) => t.name)).toContain('meeting');
+  });
 });
 
 describe('ReDoS guard', () => {

test/schema-pack-mutate.test.ts

@@ -103,7 +103,10 @@ describe('locateMutablePackFile — bundled guard', () => {
     expect(BUNDLED_PACK_NAMES.has('gbrain-recommended')).toBe(true);
     // v0.42 (T22): gbrain-base-v2 joins the bundled set.
     expect(BUNDLED_PACK_NAMES.has('gbrain-base-v2')).toBe(true);
-    expect(BUNDLED_PACK_NAMES.size).toBe(3);
+    // Derived from the single bundled registry — the lens packs (creator,
+    // investor, engineer, everything) are read-only too.
+    expect(BUNDLED_PACK_NAMES.has('gbrain-investor')).toBe(true);
+    expect(BUNDLED_PACK_NAMES.size).toBe(7);
   });
 
   it('rejects gbrain-base-v2 with PACK_READONLY (bundled guard)', () => {

test/sources-webhook.test.ts

@@ -16,7 +16,6 @@
  */
 import { describe, test, expect } from 'bun:test';
 import { createHmac } from 'node:crypto';
-import { readFileSync } from 'node:fs';
 import { safeHexEqual } from '../src/core/timing-safe.ts';
 
 const GITHUB_SECRET = 'super-secret-webhook-key';
@@ -124,25 +123,3 @@ describe('Branch ref construction (D5)', () => {
     expect(pushedRef === `refs/heads/${trackedBranch}`).toBe(false);
   });
 });
-
-describe('Webhook sync job extraction contract (#2849)', () => {
-  test('opts into extraction before the pushed commit is consumed', () => {
-    const serveSource = readFileSync(
-      new URL('../src/commands/serve-http.ts', import.meta.url),
-      'utf8',
-    );
-    const routeStart = serveSource.indexOf("'/webhooks/github'");
-    const queueStart = serveSource.indexOf('const job = await queue.add(', routeStart);
-    const responseStart = serveSource.indexOf('res.status(202)', queueStart);
-    expect(routeStart).toBeGreaterThanOrEqual(0);
-    expect(queueStart).toBeGreaterThan(routeStart);
-    expect(responseStart).toBeGreaterThan(queueStart);
-
-    const routeSource = serveSource.slice(queueStart, responseStart);
-    const payload = routeSource.match(
-      /queue\.add\(\s*'sync',\s*\{([\s\S]*?)\}\s*,\s*\{/,
-    );
-    expect(payload).not.toBeNull();
-    expect(payload?.[1]).toMatch(/\bnoExtract:\s*false\b/);
-  });
-});

test/sync-large-deferral-extract.serial.test.ts

@@ -1,130 +0,0 @@
-/**
- * #2849 — large-sync extract deferral queues an `extract --stale` follow-up.
- *
- * performSync's incremental path skips inline link/timeline extraction when
- * totalChanges > 100 (the #1794 large-sync deferral), leaving
- * links_extracted_at unstamped. Pre-fix, a standalone sync job (webhook push,
- * `gbrain sync trigger`) had NOTHING behind it to sweep those pages — the
- * autopilot cycle's extract phase only walks that cycle's changedSlugs — so a
- * large webhook push left extraction permanently stale until a manual
- * `gbrain extract --stale`.
- *
- * Pins:
- *   (a) performSync surfaces `extractDeferred: true` on the >100 branch and
- *       leaves the pages unstamped/unlinked.
- *   (b) the `sync` job handler queues an `extract` job with
- *       { stale: true, sourceId? } when extractDeferred is set.
- *   (c) the `extract` handler's stale mode actually sweeps: links created +
- *       watermark stamped (end-to-end recovery, no manual step).
- *
- * Marked .serial.test.ts — spawns git subprocesses + shares one PGLite engine.
- */
-
-import { describe, test, expect, beforeAll, afterAll } from 'bun:test';
-import { mkdtempSync, writeFileSync, rmSync, mkdirSync } from 'fs';
-import { execSync } from 'child_process';
-import { tmpdir } from 'os';
-import { join } from 'path';
-import { PGLiteEngine } from '../src/core/pglite-engine.ts';
-import { MinionWorker } from '../src/core/minions/worker.ts';
-import { MinionQueue } from '../src/core/minions/queue.ts';
-import { registerBuiltinHandlers } from '../src/commands/jobs.ts';
-
-let engine: PGLiteEngine;
-let worker: MinionWorker;
-let repoPath: string;
-
-function git(cmd: string): void { execSync(cmd, { cwd: repoPath, stdio: 'pipe' }); }
-
-describe('#2849 — large sync defers extract and queues a stale sweep', () => {
-  beforeAll(async () => {
-    engine = new PGLiteEngine();
-    await engine.connect({});
-    await engine.initSchema();
-    worker = new MinionWorker(engine, { queue: 'test' });
-    await registerBuiltinHandlers(worker, engine, { quiet: true });
-
-    repoPath = mkdtempSync(join(tmpdir(), 'gbrain-large-defer-'));
-    git('git init');
-    git('git config user.email "t@t.com"');
-    git('git config user.name "T"');
-    mkdirSync(join(repoPath, 'people'), { recursive: true });
-    mkdirSync(join(repoPath, 'notes'), { recursive: true });
-    writeFileSync(join(repoPath, 'people/alice.md'), [
-      '---', 'type: person', 'title: Alice', '---', '', 'Alice is a founder.',
-    ].join('\n'));
-    git('git add -A && git commit -m "initial"');
-
-    // Seed: full first sync imports the anchor page + sets last_commit.
-    const { performSync } = await import('../src/commands/sync.ts');
-    await performSync(engine, { repoPath, full: true, noPull: true, noEmbed: true });
-
-    // Second commit: 101 new pages → incremental totalChanges > 100.
-    for (let i = 0; i < 101; i++) {
-      writeFileSync(join(repoPath, `notes/n${i}.md`), [
-        '---', 'type: note', `title: Note ${i}`, '---', '',
-        `[Alice](people/alice) appears in note ${i}.`,
-      ].join('\n'));
-    }
-    git('git add -A && git commit -m "add 101 pages"');
-  }, 120_000);
-
-  afterAll(async () => {
-    if (repoPath) rmSync(repoPath, { recursive: true, force: true });
-    if (engine) await engine.disconnect();
-  }, 60_000);
-
-  test('sync handler defers inline extract and queues extract{stale} follow-up; stale sweep recovers', async () => {
-    const syncHandler = (worker as unknown as { handlers: Map<string, (job: unknown) => Promise<unknown>> })
-      .handlers.get('sync');
-    expect(syncHandler).toBeDefined();
-
-    // Same payload shape the webhook submits (minus embed backfill noise).
-    const result = await syncHandler!({
-      data: { repoPath, noExtract: false, noPull: true, auto_embed_backfill: false },
-      signal: { aborted: false },
-      updateProgress: async () => {},
-    }) as { status: string; extractDeferred?: boolean; extract_stale_job_id?: number | null };
-
-    expect(result.status).toBe('synced');
-    // (a) inline extract was deferred, pages left stale.
-    expect(result.extractDeferred).toBe(true);
-    const staleBefore = await engine.countStalePagesForExtraction();
-    expect(staleBefore).toBeGreaterThan(100);
-    expect(await engine.getLinks('notes/n0')).toHaveLength(0);
-
-    // (b) a follow-up extract job with stale:true was queued.
-    expect(result.extract_stale_job_id).toBeGreaterThan(0);
-    const queue = new MinionQueue(engine);
-    const extractJobs = await queue.getJobs({ name: 'extract', limit: 5 });
-    expect(extractJobs.length).toBe(1);
-    expect((extractJobs[0].data as { stale: boolean }).stale).toBe(true);
-
-    // (c) running the extract handler's stale mode recovers: links + stamps.
-    const extractHandler = (worker as unknown as { handlers: Map<string, (job: unknown) => Promise<unknown>> })
-      .handlers.get('extract');
-    await extractHandler!({
-      data: extractJobs[0].data,
-      signal: { aborted: false },
-      updateProgress: async () => {},
-    });
-    const links = await engine.getLinks('notes/n0');
-    expect(links.some(l => l.to_slug === 'people/alice')).toBe(true);
-    const rows = await engine.executeRaw<{ links_extracted_at: string | null }>(
-      `SELECT links_extracted_at FROM pages WHERE slug = 'notes/n0'`,
-    );
-    expect(rows[0]?.links_extracted_at).not.toBeNull();
-  }, 180_000);
-
-  test('sub-threshold sync does NOT set extractDeferred (no spurious follow-up)', async () => {
-    // One more small commit → inline extract path, no deferral.
-    writeFileSync(join(repoPath, 'notes/small.md'), [
-      '---', 'type: note', 'title: Small', '---', '', 'No big deal.',
-    ].join('\n'));
-    git('git add -A && git commit -m "one small page"');
-    const { performSync } = await import('../src/commands/sync.ts');
-    const result = await performSync(engine, { repoPath, noPull: true, noEmbed: true });
-    expect(result.status).toBe('synced');
-    expect(result.extractDeferred).toBeFalsy();
-  }, 60_000);
-});

test/sync-trigger-cli.test.ts

@@ -100,10 +100,6 @@ describe('runSyncTrigger', () => {
     const job = jobs[0];
     expect(job.priority).toBe(-10);
     expect((job.data as { sourceId: string }).sourceId).toBe('default');
-    // #2849: opt in to inline extraction — the standalone sync handler
-    // defaults noExtract to TRUE, which would leave triggered syncs
-    // extraction-stale.
-    expect((job.data as { noExtract: boolean }).noExtract).toBe(false);
     expect((job.data as { auto_embed_backfill: boolean }).auto_embed_backfill).toBe(true);
   });