fix(schema-pack): restore v2 capability parity + derive bundled-pack list + calibration holder config

- #2109: extract-timeline-from-meetings matches frontmatter.legacy_type='meeting'
  in both SQL sites so unify-types-migrated (gbrain-base-v2) brains keep the
  feature alive; pre-unify type='meeting' behavior unchanged.
- #2117: gbrain-base-v2 declares phases: [extract_atoms] and ports v1's
  founded/works_at/invested_in inference regexes so extract_atoms is no longer
  pack-gated off and extract-ner no longer returns pack_unavailable on the
  bundled default pack. (attended's page_type:meeting inference deliberately
  not ported — v2 declares no meeting type; lint would reject it.)
- #1726 (A): list_schema_packs derives from the exported BUNDLED_PACKS registry
  in load-active.ts instead of a frozen 2-of-7 literal.
- #1726 (B): new calibration.user_holder config key (symmetric with
  emotional_weight.user_holder) resolved by the calibration_profile phase, the
  gbrain calibration CLI, and the get_calibration_profile op; explicit
  holder param still wins; 'garry' stays the fallback.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

src/commands/calibration.ts

@@ -19,7 +19,7 @@
  */
 
 import type { BrainEngine } from '../core/engine.ts';
-import { runPhaseCalibrationProfile } from '../core/cycle/calibration-profile.ts';
+import { resolveCalibrationHolder, runPhaseCalibrationProfile } from '../core/cycle/calibration-profile.ts';
 import { sourceScopeOpts, type OperationContext } from '../core/operations.ts';
 import type { GBrainConfig } from '../core/config.ts';
 import { GBrainError } from '../core/types.ts';
@@ -167,7 +167,7 @@ export async function runCalibration(
   config: GBrainConfig,
 ): Promise<void> {
   const { opts } = parseArgs(args);
-  const holder = opts.holder ?? 'garry';
+  const holder = await resolveCalibrationHolder(engine, opts.holder);
   // Resolve --source / GBRAIN_SOURCE / .gbrain-source so the (now reachable, #2035)
   // calibration command targets the right source in a multi-source brain instead
   // of always reading `default`. No signal → 'default' (prior behavior).
@@ -253,14 +253,14 @@ export async function getCalibrationProfileOp(
   ctx: OperationContext,
   params: { holder?: string },
 ): Promise<CalibrationProfileRow | null> {
-  const holder = params.holder ?? 'garry';
-  if (typeof holder !== 'string' || holder.length === 0) {
+  if (params.holder !== undefined && (typeof params.holder !== 'string' || params.holder.length === 0)) {
     throw new GBrainError(
       'INVALID_HOLDER',
       'get_calibration_profile.holder must be a non-empty string',
-      'pass holder="<slug>" or omit to default to "garry"',
+      'pass holder="<slug>" or omit to default to the calibration.user_holder config (then "garry")',
     );
   }
+  const holder = await resolveCalibrationHolder(ctx.engine, params.holder);
   const scope = sourceScopeOpts(ctx);
   return getLatestProfile(ctx.engine, { holder, ...scope });
 }

src/commands/extract.ts

@@ -1651,7 +1651,7 @@ async function extractTimelineFromDB(
  * make re-extraction idempotent). EVERY processed page is stamped, including
  * zero-link pages — they WERE processed.
  */
-export async function extractStaleFromDB(
+async function extractStaleFromDB(
   engine: BrainEngine,
   opts: {
     dryRun: boolean;

src/commands/jobs.ts

@@ -1479,31 +1479,7 @@ export async function registerBuiltinHandlers(
       embedSkipReason = 'auto_embed_disabled';
     }
 
-    // #2849: large-sync extract deferral follow-up. performSync skips inline
-    // link/timeline extraction when totalChanges > 100, leaving
-    // links_extracted_at unstamped. A standalone sync job (webhook push,
-    // sync trigger) has no autopilot extract phase behind it, so the pages
-    // would stay extraction-stale until a manual `gbrain extract --stale`.
-    // Queue a source-scoped stale sweep instead. Best-effort + idempotent:
-    // a duplicate sweep finds 0 stale pages and no-ops.
-    let extractJobId: number | null = null;
-    if (result.extractDeferred) {
-      try {
-        const { MinionQueue } = await import('../core/minions/queue.ts');
-        const queue = new MinionQueue(engine);
-        const followUp = await queue.add(
-          'extract',
-          { stale: true, ...(sourceId ? { sourceId } : {}) },
-          {
-            idempotency_key: `sync-extract-stale:${sourceId ?? 'default'}:${Math.floor(Date.now() / 30_000)}`,
-            maxWaiting: 1,
-          },
-        );
-        extractJobId = followUp.id;
-      } catch { /* best-effort: extract --stale sweeps it later */ }
-    }
-
-    return { ...result, embed_job_id: embedJobId, embed_skip_reason: embedSkipReason, extract_stale_job_id: extractJobId };
+    return { ...result, embed_job_id: embedJobId, embed_skip_reason: embedSkipReason };
   });
 
   registerBuiltinJob(worker, engine, 'embed', async (job) => {
@@ -1676,20 +1652,6 @@ export async function registerBuiltinHandlers(
   });
 
   worker.register('extract', async (job) => {
-    // #2849: stale-sweep mode — the sync handler's large-sync deferral
-    // follow-up. DB-source (reads page content from the DB, so it runs on
-    // checkout-less brains), source-scopable, idempotent. Same core as
-    // `gbrain extract --stale`.
-    if (job.data.stale === true) {
-      const { extractStaleFromDB } = await import('./extract.ts');
-      return await extractStaleFromDB(engine, {
-        dryRun: !!job.data.dryRun,
-        jsonMode: false,
-        includeFrontmatter: false,
-        sourceIdFilter: typeof job.data.sourceId === 'string' ? job.data.sourceId : undefined,
-        catchUp: false,
-      });
-    }
     const { runExtractCore } = await import('./extract.ts');
     const mode = (typeof job.data.mode === 'string' && ['links', 'timeline', 'all'].includes(job.data.mode))
       ? (job.data.mode as 'links' | 'timeline' | 'all')

src/commands/serve-http.ts

@@ -2146,13 +2146,8 @@ export async function runServeHttp(engine: BrainEngine, options: ServeHttpOption
   //     Other event types (ping, pull_request, etc.) return 202 'ignored'
   //     so GitHub doesn't retry.
   // D15.5: HMAC compare uses the shared safeHexEqual helper.
-  // D18: submits 'sync' job with extraction + auto_embed_backfill enabled and
-  //     priority -10 (above autopilot's 0). noExtract:false opts normal
-  //     incremental pushes into sync's inline link/timeline extraction (#2849
-  //     — the standalone sync handler defaults noExtract to TRUE, which left
-  //     webhook-imported pages permanently stale). Large (>100 file) pushes
-  //     defer inline extract; the sync handler queues an extract --stale
-  //     follow-up job for that branch.
+  // D18: submits 'sync' job with auto_embed_backfill=true and priority -10
+  //     (above autopilot's 0).
   // ---------------------------------------------------------------------------
   const githubWebhookLimiter = rateLimit({
     windowMs: 60_000,
@@ -2272,7 +2267,6 @@ export async function runServeHttp(engine: BrainEngine, options: ServeHttpOption
           'sync',
           {
             sourceId: source.id,
-            noExtract: false,
             auto_embed_backfill: true,
             embed_reason: 'webhook',
           },

src/commands/sync.ts

@@ -222,14 +222,6 @@ export interface SyncResult {
    * everything," the exact misdiagnosis in the #1794 recurrence report.
    */
   bankedFiles?: number;
-  /**
-   * #2849: true when extraction was REQUESTED (noExtract false) but this sync
-   * skipped inline link/timeline extraction because totalChanges > 100 (the
-   * #1794 large-sync deferral). links_extracted_at stays unstamped for the
-   * imported pages. The standalone `sync` job handler queues a source-scoped
-   * `extract --stale` follow-up when set; CLI runs print the manual hint.
-   */
-  extractDeferred?: boolean;
 }
 
 /**
@@ -1387,10 +1379,6 @@ See also:
     {
       sourceId: sourceIdArg,
       repoPath: source.local_path,
-      // #2849: opt in to inline extraction — the standalone sync handler
-      // defaults noExtract to TRUE (dedupe for doctor's [sync, extract]
-      // remediation plan), which would leave triggered syncs extraction-stale.
-      noExtract: false,
       auto_embed_backfill: true,
       embed_reason: 'sync_trigger',
     },
@@ -3299,16 +3287,11 @@ async function performSyncInner(engine: BrainEngine, opts: SyncOpts): Promise<Sy
   // the stale sweep scans the whole source, so banked-across-runs pages are
   // covered regardless.
   const extractOpts = opts.sourceId ? { sourceId: opts.sourceId } : undefined;
-  let extractDeferred = false;
   if (!opts.noExtract && totalChanges > 100 && pagesAffected.length > 0) {
-    // #2849: surface the deferral to callers. A standalone sync job (webhook
-    // push, sync trigger) has no autopilot extract phase behind it, so the
-    // job handler queues an `extract --stale` follow-up off this flag.
-    extractDeferred = true;
     slog(
       `  Large sync: deferring link/timeline extraction. ` +
       `Run 'gbrain extract --stale${opts.sourceId ? ` --source-id ${opts.sourceId}` : ''}' ` +
-      `(sync jobs queue this follow-up automatically).`,
+      `(or let the autopilot cycle's extract phase sweep it).`,
     );
   }
   if (!opts.noExtract && totalChanges <= 100 && pagesAffected.length > 0) {
@@ -3417,7 +3400,6 @@ async function performSyncInner(engine: BrainEngine, opts: SyncOpts): Promise<Sy
     chunksCreated,
     embedded,
     pagesAffected,
-    extractDeferred,
   };
 }
 

src/core/config.ts

@@ -928,6 +928,10 @@ export const KNOWN_CONFIG_KEYS: readonly string[] = [
   // Emotional weight (v0.29)
   'emotional_weight.high_tags',
   'emotional_weight.user_holder',
+  // Calibration holder (#1726): persistent default for the nightly
+  // calibration_profile phase + `gbrain calibration`, symmetric with
+  // emotional_weight.user_holder. Falls back to 'garry' when unset.
+  'calibration.user_holder',
   // Cycle phase config
   'cycle.grade_takes.write_gstack_learnings',
   // Content sanity (v0.41)

src/core/cycle/calibration-profile.ts

@@ -96,7 +96,7 @@ export type PatternStatementsGenerator = (input: {
 export type BiasTagsGenerator = (patterns: string[]) => Promise<string[]>;
 
 export interface CalibrationProfileOpts extends BasePhaseOpts {
-  /** Holder to generate the profile for. Default 'garry'. */
+  /** Holder to generate the profile for. Default: `calibration.user_holder` config, then 'garry'. */
   holder?: string;
   /** Inject the patterns generator (tests). */
   patternsGenerator?: PatternStatementsGenerator;
@@ -194,6 +194,26 @@ export function parseBiasTagsOutput(raw: string): string[] {
     .slice(0, 4);
 }
 
+/**
+ * #1726: resolve the calibration holder. Explicit param wins, then the
+ * persistent `calibration.user_holder` config key (symmetric with
+ * emotional_weight.user_holder), then the legacy 'garry' default. Fail-open:
+ * a missing config table / mock engine without getConfig falls through.
+ */
+export async function resolveCalibrationHolder(
+  engine: BrainEngine,
+  explicit?: string,
+): Promise<string> {
+  if (explicit) return explicit;
+  try {
+    const configured = await engine.getConfig('calibration.user_holder');
+    if (configured && configured.trim().length > 0) return configured.trim();
+  } catch {
+    // Config unavailable — use the legacy default.
+  }
+  return 'garry';
+}
+
 /** Pick the "loudest" pattern slot for the template fallback. */
 function pickFallbackSlots(scorecard: TakesScorecard): PatternStatementSlots {
   if (!scorecard || scorecard.resolved === 0) {
@@ -227,7 +247,7 @@ class CalibrationProfilePhase extends BaseCyclePhase {
     _ctx: OperationContext,
     opts: CalibrationProfileOpts,
   ): Promise<{ summary: string; details: Record<string, unknown>; status?: PhaseStatus }> {
-    const holder = opts.holder ?? 'garry';
+    const holder = await resolveCalibrationHolder(engine, opts.holder);
     const promptVersion = opts.promptVersion ?? CALIBRATION_PROFILE_PROMPT_VERSION;
     const modelId = opts.model ?? TIER_DEFAULTS.reasoning;
     const gradeCompletion = opts.gradeCompletion ?? 1.0;

src/core/extract-timeline-from-meetings.ts

@@ -68,11 +68,14 @@ export async function extractTimelineFromMeetings(
   // 1. Fetch all meeting pages (one round-trip).
   const sourceFilter = opts.sourceIdFilter ? `AND source_id = $1` : '';
   const meetingParams = opts.sourceIdFilter ? [opts.sourceIdFilter] : [];
+  // #2109: gbrain-base-v2's unify-types catch-all retypes meeting pages to
+  // `note` with frontmatter.legacy_type = 'meeting'. Match both spellings so
+  // the extractor keeps working on migrated (v2) brains, not just v1 ones.
   const meetings = await engine.executeRaw<MeetingRow>(
     `SELECT slug, source_id, title, effective_date, updated_at,
             compiled_truth, COALESCE(timeline, '') AS timeline
        FROM pages
-      WHERE type = 'meeting'
+      WHERE (type = 'meeting' OR frontmatter ->> 'legacy_type' = 'meeting')
         AND deleted_at IS NULL
         ${sourceFilter}
       ORDER BY effective_date DESC NULLS LAST, slug`,
@@ -94,7 +97,7 @@ export async function extractTimelineFromMeetings(
        JOIN pages pf ON pf.id = l.from_page_id
        JOIN pages pt ON pt.id = l.to_page_id
       WHERE l.link_type = 'attended'
-        AND pf.type = 'meeting'
+        AND (pf.type = 'meeting' OR pf.frontmatter ->> 'legacy_type' = 'meeting')
         AND pf.deleted_at IS NULL
         AND pt.deleted_at IS NULL`,
   );

src/core/operations.ts

@@ -4562,7 +4562,10 @@ const list_schema_packs: Operation = {
     const { existsSync, readdirSync } = await import('node:fs');
     const { join } = await import('node:path');
     const { gbrainPath } = await import('./config.ts');
-    const bundled = ['gbrain-base', 'gbrain-recommended'];
+    // #1726: derive from the locator's registry instead of a hand-copied
+    // subset (which had frozen at 2 of 7 bundled packs).
+    const { BUNDLED_PACKS } = await import('./schema-pack/load-active.ts');
+    const bundled = [...BUNDLED_PACKS];
     const installedDir = gbrainPath('schema-packs');
     const installed: string[] = [];
     if (existsSync(installedDir)) {

src/core/schema-pack/base/gbrain-base-v2.yaml

@@ -41,6 +41,12 @@ migration_from:
   pack: gbrain-base
   version: "1.x"
 
+# #2117 — cycle-phase participation. `phases:` is additive and pack-gated;
+# without this key extract_atoms is silently off on v2 brains even though
+# onboard + doctor recommend it (v2 declares the `atom` type it writes).
+phases:
+  - extract_atoms
+
 page_types:
   - name: person
     primitive: entity
@@ -319,6 +325,10 @@ page_types:
     extractable: false
     expert_routing: false
 
+# #2117 — inference rules ported from gbrain-base v1 so extract-ner keeps
+# working on v2 brains (it hard-skips with pack_unavailable when no
+# link_type declares an inference.regex). Same ReDoS-guarded sketch
+# regexes v1 ships; production matchers in link-extraction.ts still apply.
 link_types:
   - name: partner_of
     inverse: partner_of
@@ -328,14 +338,24 @@ link_types:
   - name: discusses
   - name: founded
     inverse: founded_by
+    inference:
+      regex: \b(founded|founder of|co-?founded|started)\b
   - name: works_at
     inverse: employs
+    inference:
+      regex: \b(works? at|employed by|works? for|joined|hired by|ceo of|cto of|cmo of)\b
   - name: invested_in
     inverse: investor_of
+    inference:
+      regex: \b(invested in|backed|seeded|funded|wrote a check)\b
   - name: sourced_from
   - name: derived_from
   - name: supersedes
   - name: redirects_to
+  # NOTE: v1's `attended` inference is page_type-bound to `meeting`, which
+  # v2 does not declare (lint: link_types_undeclared_page_type). Meeting
+  # pages retyped by unify-types are matched via frontmatter.legacy_type
+  # in extract-timeline-from-meetings (#2109) instead.
   - name: attended
     inverse: attended_by
   - name: authored

src/core/schema-pack/load-active.ts

@@ -91,29 +91,33 @@ export function _resetPackLocatorForTests(): void {
  * Returns null when the pack is not found. Callers handle null by
  * throwing UnknownPackError with a paste-ready install hint.
  */
+// v0.39 T8 — bundled packs registry. gbrain-base + gbrain-recommended
+// ship in src/core/schema-pack/base/. Add a new entry here to bundle
+// additional canonical packs.
+//
+// v0.41 T4 — lens packs join the bundle: creator (atoms + concepts +
+// extract_atoms/synthesize_concepts phases), investor (theses + bet
+// resolution + 3 calibration domains), engineer (gstack-learnings bridge
+// + 3 calibration domains), everything (meta-pack stacking all three
+// via extends + borrow_from). Each ships as a real YAML at base/<name>.yaml.
+//
+// #1726: exported so reporting surfaces (list_schema_packs) derive from the
+// same list the locator resolves — no more hand-copied 2-of-7 subsets.
+export const BUNDLED_PACKS: ReadonlyArray<string> = [
+  'gbrain-base',
+  'gbrain-recommended',
+  'gbrain-creator',
+  'gbrain-investor',
+  'gbrain-engineer',
+  'gbrain-everything',
+  // v0.42 type-unification: 15-type canonical successor to gbrain-base.
+  // Ships as install default (Lane E T17) + via gbrain onboard pack
+  // upgrade flow (the unify-types Minion handler).
+  'gbrain-base-v2',
+];
+
 function defaultPackLocator(name: string): string | null {
-  // v0.39 T8 — bundled packs registry. gbrain-base + gbrain-recommended
-  // ship in src/core/schema-pack/base/. Add a new entry here to bundle
-  // additional canonical packs.
-  //
-  // v0.41 T4 — lens packs join the bundle: creator (atoms + concepts +
-  // extract_atoms/synthesize_concepts phases), investor (theses + bet
-  // resolution + 3 calibration domains), engineer (gstack-learnings bridge
-  // + 3 calibration domains), everything (meta-pack stacking all three
-  // via extends + borrow_from). Each ships as a real YAML at base/<name>.yaml.
-  const BUNDLED: ReadonlyArray<string> = [
-    'gbrain-base',
-    'gbrain-recommended',
-    'gbrain-creator',
-    'gbrain-investor',
-    'gbrain-engineer',
-    'gbrain-everything',
-    // v0.42 type-unification: 15-type canonical successor to gbrain-base.
-    // Ships as install default (Lane E T17) + via gbrain onboard pack
-    // upgrade flow (the unify-types Minion handler).
-    'gbrain-base-v2',
-  ];
-  if (BUNDLED.includes(name)) {
+  if (BUNDLED_PACKS.includes(name)) {
     // Resolve bundled YAML relative to this source file. Works in both
     // direct-bun execution and bun --compile binaries.
     const here = dirname(fileURLToPath(import.meta.url));

test/calibration-profile.test.ts

@@ -32,7 +32,7 @@ interface CapturedSql {
   params: unknown[];
 }
 
-function buildMockEngine(opts: { scorecard: TakesScorecard }): {
+function buildMockEngine(opts: { scorecard: TakesScorecard; config?: Record<string, string> }): {
   engine: BrainEngine;
   captured: CapturedSql[];
 } {
@@ -42,6 +42,9 @@ function buildMockEngine(opts: { scorecard: TakesScorecard }): {
     async getScorecard() {
       return opts.scorecard;
     },
+    async getConfig(key: string) {
+      return opts.config?.[key] ?? null;
+    },
     async executeRaw<T>(sql: string, params?: unknown[]): Promise<T[]> {
       captured.push({ sql, params: params ?? [] });
       return [];
@@ -241,6 +244,36 @@ describe('runPhaseCalibrationProfile — phase integration', () => {
     expect(insert!.params[11]).toEqual(['over-confident-geography']); // active_bias_tags
   });
 
+  test('#1726: calibration.user_holder config drives the holder when no explicit opt', async () => {
+    const { engine, captured } = buildMockEngine({
+      scorecard: ENOUGH_RESOLVED_SCORECARD,
+      config: { 'calibration.user_holder': 'alice-example' },
+    });
+    await runPhaseCalibrationProfile(buildCtx(engine), {
+      patternsGenerator: async () => ['You call early-stage tactics well — 8 of 10 held up.'],
+      biasTagsGenerator: async () => [],
+      voiceGateJudge: passJudge,
+    });
+    const insert = captured.find(c => c.sql.includes('INSERT INTO calibration_profiles'));
+    expect(insert).toBeDefined();
+    expect(insert!.params[1]).toBe('alice-example'); // holder from config
+  });
+
+  test('#1726: explicit holder opt wins over calibration.user_holder config', async () => {
+    const { engine, captured } = buildMockEngine({
+      scorecard: ENOUGH_RESOLVED_SCORECARD,
+      config: { 'calibration.user_holder': 'alice-example' },
+    });
+    await runPhaseCalibrationProfile(buildCtx(engine), {
+      holder: 'charlie-example',
+      patternsGenerator: async () => ['You call early-stage tactics well — 8 of 10 held up.'],
+      biasTagsGenerator: async () => [],
+      voiceGateJudge: passJudge,
+    });
+    const insert = captured.find(c => c.sql.includes('INSERT INTO calibration_profiles'));
+    expect(insert!.params[1]).toBe('charlie-example');
+  });
+
   test('default model is a provider-prefixed id, persisted to model_id (#2451)', async () => {
     const { engine, captured } = buildMockEngine({ scorecard: ENOUGH_RESOLVED_SCORECARD });
     const patternsGenerator: PatternStatementsGenerator = async () => [

test/extract-timeline-legacy-type.test.ts

@@ -0,0 +1,106 @@
+// #2109 — gbrain-base-v2's unify-types retypes meeting pages to `note`
+// with frontmatter.legacy_type='meeting'. extract-timeline-from-meetings
+// used to hardcode type='meeting' and silently scan 0 meetings on migrated
+// brains. These tests fail without the legacy_type fallback in both SQL
+// sites (meeting walk + attended-edge join).
+
+import { afterAll, beforeAll, beforeEach, describe, expect, it } from 'bun:test';
+import { PGLiteEngine } from '../src/core/pglite-engine.ts';
+import { resetPgliteState } from './helpers/reset-pglite.ts';
+import { extractTimelineFromMeetings } from '../src/core/extract-timeline-from-meetings.ts';
+
+let engine: PGLiteEngine;
+
+beforeAll(async () => {
+  engine = new PGLiteEngine();
+  await engine.connect({});
+  await engine.initSchema();
+});
+
+afterAll(async () => {
+  await engine.disconnect();
+});
+
+beforeEach(async () => {
+  await resetPgliteState(engine);
+});
+
+async function insertPage(opts: {
+  slug: string;
+  type: string;
+  title: string;
+  effectiveDate?: string;
+  legacyType?: string;
+}): Promise<number> {
+  const frontmatterLiteral = opts.legacyType
+    ? `'{"legacy_type": "${opts.legacyType}"}'::jsonb`
+    : `'{}'::jsonb`;
+  const rows = await engine.executeRaw<{ id: number }>(
+    `INSERT INTO pages (slug, source_id, type, title, compiled_truth, timeline, effective_date, frontmatter)
+     VALUES ($1, 'default', $2, $3, '', '', $4, ${frontmatterLiteral})
+     RETURNING id`,
+    [opts.slug, opts.type, opts.title, opts.effectiveDate ?? null],
+  );
+  return rows[0]!.id;
+}
+
+describe('extractTimelineFromMeetings — legacy_type fallback (#2109)', () => {
+  it('scans pages retyped to note with legacy_type=meeting and walks their attended edges', async () => {
+    const meetingId = await insertPage({
+      slug: 'meetings/2026-01-05',
+      type: 'note', // post-unify-types shape on a gbrain-base-v2 brain
+      legacyType: 'meeting',
+      title: 'Weekly sync',
+      effectiveDate: '2026-01-05',
+    });
+    const personId = await insertPage({
+      slug: 'people/alice-example',
+      type: 'person',
+      title: 'Alice Example',
+    });
+    await engine.executeRaw(
+      `INSERT INTO links (from_page_id, to_page_id, link_type) VALUES ($1, $2, 'attended')`,
+      [meetingId, personId],
+    );
+
+    const result = await extractTimelineFromMeetings(engine);
+    expect(result.meetings_scanned).toBe(1);
+    expect(result.entries_created).toBe(1);
+    expect(result.entities_touched).toBe(1);
+    expect(result.batch_errors).toBe(0);
+  });
+
+  it('still scans pre-unify pages with type=meeting (v1 behavior preserved)', async () => {
+    const meetingId = await insertPage({
+      slug: 'meetings/2026-02-01',
+      type: 'meeting',
+      title: 'Board prep',
+      effectiveDate: '2026-02-01',
+    });
+    const personId = await insertPage({
+      slug: 'people/charlie-example',
+      type: 'person',
+      title: 'Charlie Example',
+    });
+    await engine.executeRaw(
+      `INSERT INTO links (from_page_id, to_page_id, link_type) VALUES ($1, $2, 'attended')`,
+      [meetingId, personId],
+    );
+
+    const result = await extractTimelineFromMeetings(engine);
+    expect(result.meetings_scanned).toBe(1);
+    expect(result.entries_created).toBe(1);
+  });
+
+  it('does not scan unrelated note pages without legacy_type=meeting', async () => {
+    await insertPage({
+      slug: 'notes/random',
+      type: 'note',
+      title: 'Random note',
+      effectiveDate: '2026-03-01',
+    });
+    const result = await extractTimelineFromMeetings(engine);
+    expect(result.meetings_scanned).toBe(0);
+    expect(result.entries_created).toBe(0);
+  });
+});

test/operations-schema-pack.test.ts

@@ -152,6 +152,19 @@ describe('list_schema_packs', () => {
       expect(result.installed).toContain('mine');
     });
   });
+
+  it('reports the full bundled registry, not a hand-copied subset (#1726)', async () => {
+    await withEnv({ GBRAIN_HOME: tmpDir }, async () => {
+      const { BUNDLED_PACKS } = await import('../src/core/schema-pack/load-active.ts');
+      const result = await operationsByName.list_schema_packs!.handler(ctxOf(), {}) as { bundled: string[] };
+      expect(result.bundled.slice().sort()).toEqual([...BUNDLED_PACKS].sort());
+      // The lens packs that declare extract_atoms/synthesize_concepts phases
+      // were the ones dropped by the frozen 2-pack literal.
+      for (const name of ['gbrain-creator', 'gbrain-everything', 'gbrain-base-v2']) {
+        expect(result.bundled).toContain(name);
+      }
+    });
+  });
 });
 
 // ── schema_stats ───────────────────────────────────────────────────────

test/schema-pack-base-v2-capabilities.test.ts

@@ -0,0 +1,40 @@
+// #2117 — gbrain-base-v2 shipped with no `phases:` declaration and zero
+// link_types[].inference regexes, so extract_atoms was silently pack-gated
+// off and extract-ner returned pack_unavailable on the bundled default pack.
+// These assertions fail against the pre-fix yaml.
+
+import { describe, expect, it } from 'bun:test';
+import { join } from 'node:path';
+import { loadPackFromFile } from '../src/core/schema-pack/loader.ts';
+import { linkTypesUndeclared } from '../src/core/schema-pack/lint-rules.ts';
+
+const V2_PATH = join(import.meta.dir, '..', 'src', 'core', 'schema-pack', 'base', 'gbrain-base-v2.yaml');
+
+describe('gbrain-base-v2 capability parity (#2117)', () => {
+  const manifest = loadPackFromFile(V2_PATH);
+
+  it('declares the extract_atoms cycle phase', () => {
+    expect(manifest.phases ?? []).toContain('extract_atoms');
+  });
+
+  it('ships at least one link_type inference regex so extract-ner is not pack_unavailable', () => {
+    // Mirrors the extract-ner hasRegex predicate exactly.
+    const hasRegex = manifest.link_types.some(
+      (lt) => lt.inference && typeof lt.inference === 'object' && 'regex' in lt.inference,
+    );
+    expect(hasRegex).toBe(true);
+  });
+
+  it('ports the v1 inference verbs it declares link types for', () => {
+    const withRegex = manifest.link_types
+      .filter((lt) => lt.inference?.regex)
+      .map((lt) => lt.name)
+      .sort();
+    expect(withRegex).toEqual(['founded', 'invested_in', 'works_at']);
+  });
+
+  it('inference rules pass the undeclared-page-type lint (no meeting-bound inference)', async () => {
+    const issues = await linkTypesUndeclared(manifest);
+    expect(issues).toEqual([]);
+  });
+});

test/sources-webhook.test.ts

@@ -16,7 +16,6 @@
  */
 import { describe, test, expect } from 'bun:test';
 import { createHmac } from 'node:crypto';
-import { readFileSync } from 'node:fs';
 import { safeHexEqual } from '../src/core/timing-safe.ts';
 
 const GITHUB_SECRET = 'super-secret-webhook-key';
@@ -124,25 +123,3 @@ describe('Branch ref construction (D5)', () => {
     expect(pushedRef === `refs/heads/${trackedBranch}`).toBe(false);
   });
 });
-
-describe('Webhook sync job extraction contract (#2849)', () => {
-  test('opts into extraction before the pushed commit is consumed', () => {
-    const serveSource = readFileSync(
-      new URL('../src/commands/serve-http.ts', import.meta.url),
-      'utf8',
-    );
-    const routeStart = serveSource.indexOf("'/webhooks/github'");
-    const queueStart = serveSource.indexOf('const job = await queue.add(', routeStart);
-    const responseStart = serveSource.indexOf('res.status(202)', queueStart);
-    expect(routeStart).toBeGreaterThanOrEqual(0);
-    expect(queueStart).toBeGreaterThan(routeStart);
-    expect(responseStart).toBeGreaterThan(queueStart);
-
-    const routeSource = serveSource.slice(queueStart, responseStart);
-    const payload = routeSource.match(
-      /queue\.add\(\s*'sync',\s*\{([\s\S]*?)\}\s*,\s*\{/,
-    );
-    expect(payload).not.toBeNull();
-    expect(payload?.[1]).toMatch(/\bnoExtract:\s*false\b/);
-  });
-});

test/sync-large-deferral-extract.serial.test.ts

@@ -1,130 +0,0 @@
-/**
- * #2849 — large-sync extract deferral queues an `extract --stale` follow-up.
- *
- * performSync's incremental path skips inline link/timeline extraction when
- * totalChanges > 100 (the #1794 large-sync deferral), leaving
- * links_extracted_at unstamped. Pre-fix, a standalone sync job (webhook push,
- * `gbrain sync trigger`) had NOTHING behind it to sweep those pages — the
- * autopilot cycle's extract phase only walks that cycle's changedSlugs — so a
- * large webhook push left extraction permanently stale until a manual
- * `gbrain extract --stale`.
- *
- * Pins:
- *   (a) performSync surfaces `extractDeferred: true` on the >100 branch and
- *       leaves the pages unstamped/unlinked.
- *   (b) the `sync` job handler queues an `extract` job with
- *       { stale: true, sourceId? } when extractDeferred is set.
- *   (c) the `extract` handler's stale mode actually sweeps: links created +
- *       watermark stamped (end-to-end recovery, no manual step).
- *
- * Marked .serial.test.ts — spawns git subprocesses + shares one PGLite engine.
- */
-
-import { describe, test, expect, beforeAll, afterAll } from 'bun:test';
-import { mkdtempSync, writeFileSync, rmSync, mkdirSync } from 'fs';
-import { execSync } from 'child_process';
-import { tmpdir } from 'os';
-import { join } from 'path';
-import { PGLiteEngine } from '../src/core/pglite-engine.ts';
-import { MinionWorker } from '../src/core/minions/worker.ts';
-import { MinionQueue } from '../src/core/minions/queue.ts';
-import { registerBuiltinHandlers } from '../src/commands/jobs.ts';
-
-let engine: PGLiteEngine;
-let worker: MinionWorker;
-let repoPath: string;
-
-function git(cmd: string): void { execSync(cmd, { cwd: repoPath, stdio: 'pipe' }); }
-
-describe('#2849 — large sync defers extract and queues a stale sweep', () => {
-  beforeAll(async () => {
-    engine = new PGLiteEngine();
-    await engine.connect({});
-    await engine.initSchema();
-    worker = new MinionWorker(engine, { queue: 'test' });
-    await registerBuiltinHandlers(worker, engine, { quiet: true });
-
-    repoPath = mkdtempSync(join(tmpdir(), 'gbrain-large-defer-'));
-    git('git init');
-    git('git config user.email "t@t.com"');
-    git('git config user.name "T"');
-    mkdirSync(join(repoPath, 'people'), { recursive: true });
-    mkdirSync(join(repoPath, 'notes'), { recursive: true });
-    writeFileSync(join(repoPath, 'people/alice.md'), [
-      '---', 'type: person', 'title: Alice', '---', '', 'Alice is a founder.',
-    ].join('\n'));
-    git('git add -A && git commit -m "initial"');
-
-    // Seed: full first sync imports the anchor page + sets last_commit.
-    const { performSync } = await import('../src/commands/sync.ts');
-    await performSync(engine, { repoPath, full: true, noPull: true, noEmbed: true });
-
-    // Second commit: 101 new pages → incremental totalChanges > 100.
-    for (let i = 0; i < 101; i++) {
-      writeFileSync(join(repoPath, `notes/n${i}.md`), [
-        '---', 'type: note', `title: Note ${i}`, '---', '',
-        `[Alice](people/alice) appears in note ${i}.`,
-      ].join('\n'));
-    }
-    git('git add -A && git commit -m "add 101 pages"');
-  }, 120_000);
-
-  afterAll(async () => {
-    if (repoPath) rmSync(repoPath, { recursive: true, force: true });
-    if (engine) await engine.disconnect();
-  }, 60_000);
-
-  test('sync handler defers inline extract and queues extract{stale} follow-up; stale sweep recovers', async () => {
-    const syncHandler = (worker as unknown as { handlers: Map<string, (job: unknown) => Promise<unknown>> })
-      .handlers.get('sync');
-    expect(syncHandler).toBeDefined();
-
-    // Same payload shape the webhook submits (minus embed backfill noise).
-    const result = await syncHandler!({
-      data: { repoPath, noExtract: false, noPull: true, auto_embed_backfill: false },
-      signal: { aborted: false },
-      updateProgress: async () => {},
-    }) as { status: string; extractDeferred?: boolean; extract_stale_job_id?: number | null };
-
-    expect(result.status).toBe('synced');
-    // (a) inline extract was deferred, pages left stale.
-    expect(result.extractDeferred).toBe(true);
-    const staleBefore = await engine.countStalePagesForExtraction();
-    expect(staleBefore).toBeGreaterThan(100);
-    expect(await engine.getLinks('notes/n0')).toHaveLength(0);
-
-    // (b) a follow-up extract job with stale:true was queued.
-    expect(result.extract_stale_job_id).toBeGreaterThan(0);
-    const queue = new MinionQueue(engine);
-    const extractJobs = await queue.getJobs({ name: 'extract', limit: 5 });
-    expect(extractJobs.length).toBe(1);
-    expect((extractJobs[0].data as { stale: boolean }).stale).toBe(true);
-
-    // (c) running the extract handler's stale mode recovers: links + stamps.
-    const extractHandler = (worker as unknown as { handlers: Map<string, (job: unknown) => Promise<unknown>> })
-      .handlers.get('extract');
-    await extractHandler!({
-      data: extractJobs[0].data,
-      signal: { aborted: false },
-      updateProgress: async () => {},
-    });
-    const links = await engine.getLinks('notes/n0');
-    expect(links.some(l => l.to_slug === 'people/alice')).toBe(true);
-    const rows = await engine.executeRaw<{ links_extracted_at: string | null }>(
-      `SELECT links_extracted_at FROM pages WHERE slug = 'notes/n0'`,
-    );
-    expect(rows[0]?.links_extracted_at).not.toBeNull();
-  }, 180_000);
-
-  test('sub-threshold sync does NOT set extractDeferred (no spurious follow-up)', async () => {
-    // One more small commit → inline extract path, no deferral.
-    writeFileSync(join(repoPath, 'notes/small.md'), [
-      '---', 'type: note', 'title: Small', '---', '', 'No big deal.',
-    ].join('\n'));
-    git('git add -A && git commit -m "one small page"');
-    const { performSync } = await import('../src/commands/sync.ts');
-    const result = await performSync(engine, { repoPath, noPull: true, noEmbed: true });
-    expect(result.status).toBe('synced');
-    expect(result.extractDeferred).toBeFalsy();
-  }, 60_000);
-});

test/sync-trigger-cli.test.ts

@@ -100,10 +100,6 @@ describe('runSyncTrigger', () => {
     const job = jobs[0];
     expect(job.priority).toBe(-10);
     expect((job.data as { sourceId: string }).sourceId).toBe('default');
-    // #2849: opt in to inline extraction — the standalone sync handler
-    // defaults noExtract to TRUE, which would leave triggered syncs
-    // extraction-stale.
-    expect((job.data as { noExtract: boolean }).noExtract).toBe(false);
     expect((job.data as { auto_embed_backfill: boolean }).auto_embed_backfill).toBe(true);
   });