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Garry TanandClaude Fable 5 edf7fc6b5a fix(skills): green CI for vault skills — resolver health, fixture lint, privacy literal, llms bundle
- RESOLVER.md rows now round-trip against SKILL.md frontmatter triggers
  ('put this setup change in the vault'; replace 'safe/free gbrain index'
  with 'import my vault to gbrain').
- Rewrite both routing-eval.jsonl fixture sets: positives embed a trigger
  phrase in natural context (fixture linter rejects verbatim tautologies),
  declare ambiguous_with for legitimate co-fires (capture, idea-ingest),
  and negatives no longer collide with skillpack-harvest/setup triggers.
  check:resolver --strict is clean (0 errors, 0 warnings).
- Privacy: the vault-capture regression test sources the banned fork-name
  pattern from harvest-lint's DEFAULT_PRIVATE_PATTERNS instead of the
  literal, so scripts/check-privacy.sh passes.
- Regenerate llms-full.txt after the RESOLVER.md edit (build-llms
  freshness gate).

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
2026-07-22 11:03:38 -07:00
b7f42f099a feat(skills): skillify vault skills — obsidian-gbrain-safe-index + skill-vault-capture-policy (takeover of #2685)
Salvages the intended 8-file change from PR #2685 (two vault skills with
routing-eval fixtures + unit/E2E tests, registered in RESOLVER.md,
manifest.json, and openclaw.plugin.json) without the ~670 unrelated
third-party skill dumps that contaminated that branch.

Also scrubs private user/agent names from skill-vault-capture-policy per
the repo privacy rule, with a regression test.

Takeover of #2685.

Co-authored-by: MortdAdam <MortdAdam@users.noreply.github.com>
Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
2026-07-21 14:27:59 -07:00
20 changed files with 528 additions and 228 deletions
+3 -1
View File
@@ -1411,7 +1411,8 @@ This is the dispatcher. Skills are the implementation. **Read the skill file bef
| "get more out of gbrain", "is my brain set up right", "weekly brain checkup", "advise me on my brain", "gbrain advisor" | `skills/gbrain-advisor/SKILL.md` |
| Save or load reports | `skills/reports/SKILL.md` |
| "Create a skill", "improve this skill" | `skills/skill-creator/SKILL.md` |
| "Skillify this", "is this a skill?", "make this proper" | `skills/skillify/SKILL.md` |
| "save this learning to the vault", "capture this skill in Obsidian", "record this workflow in my notes", "put this setup change in the vault" | `skills/skill-vault-capture-policy/SKILL.md` |
| "Skillify this", "is this a skill?", "make this proper", "add tests and evals for this" | `skills/skillify/SKILL.md` |
| "Compress my resolver", "AGENTS.md too large", "RESOLVER.md too big", "functional area dispatcher", "shrink routing table" | `skills/functional-area-resolver/SKILL.md` |
| "Is gbrain healthy?", morning health check, skillpack-check | `skills/skillpack-check/SKILL.md` |
| "harvest this skill into gbrain", "publish this skill to gbrain", "lift this skill upstream", "share this skill with other gbrain clients", "promote my skill to gbrain" | `skills/skillpack-harvest/SKILL.md` |
@@ -1429,6 +1430,7 @@ This is the dispatcher. Skills are the implementation. **Read the skill file bef
| "Set up GBrain", first boot | `skills/setup/SKILL.md` |
| "Now what?", "fill my brain", "cold start", "bootstrap", "import my data", "what should I import first" | `skills/cold-start/SKILL.md` |
| "Migrate from Obsidian/Notion/Logseq" | `skills/migrate/SKILL.md` |
| "Connect Obsidian to gbrain", "import my vault to gbrain", "sync vault and gbrain", "embed gbrain after vault update", "is gbrain synced with my vault" | `skills/obsidian-gbrain-safe-index/SKILL.md` |
| Brain health check, maintenance run | `skills/maintain/SKILL.md` |
| "Extract links", "build link graph", "populate timeline" | `skills/maintain/SKILL.md` (extraction sections) |
| "Run dream", "process today's session", "synthesize my conversations", "consolidate yesterday's conversations", "what patterns did you see", "did the dream cycle run" | `skills/maintain/SKILL.md` (dream cycle section) |
+3 -2
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@@ -39,8 +39,8 @@
"skills/briefing",
"skills/citation-fixer",
"skills/concept-synthesis",
"skills/cross-modal-review",
"skills/cron-scheduler",
"skills/cross-modal-review",
"skills/daily-task-manager",
"skills/daily-task-prep",
"skills/data-research",
@@ -54,10 +54,11 @@
"skills/media-ingest",
"skills/meeting-ingestion",
"skills/minion-orchestrator",
"skills/obsidian-gbrain-safe-index",
"skills/perplexity-research",
"skills/query",
"skills/reports",
"skills/repo-architecture",
"skills/reports",
"skills/signal-detector",
"skills/skill-creator",
"skills/skillify",
+3 -1
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@@ -60,7 +60,8 @@ This is the dispatcher. Skills are the implementation. **Read the skill file bef
| "get more out of gbrain", "is my brain set up right", "weekly brain checkup", "advise me on my brain", "gbrain advisor" | `skills/gbrain-advisor/SKILL.md` |
| Save or load reports | `skills/reports/SKILL.md` |
| "Create a skill", "improve this skill" | `skills/skill-creator/SKILL.md` |
| "Skillify this", "is this a skill?", "make this proper" | `skills/skillify/SKILL.md` |
| "save this learning to the vault", "capture this skill in Obsidian", "record this workflow in my notes", "put this setup change in the vault" | `skills/skill-vault-capture-policy/SKILL.md` |
| "Skillify this", "is this a skill?", "make this proper", "add tests and evals for this" | `skills/skillify/SKILL.md` |
| "Compress my resolver", "AGENTS.md too large", "RESOLVER.md too big", "functional area dispatcher", "shrink routing table" | `skills/functional-area-resolver/SKILL.md` |
| "Is gbrain healthy?", morning health check, skillpack-check | `skills/skillpack-check/SKILL.md` |
| "harvest this skill into gbrain", "publish this skill to gbrain", "lift this skill upstream", "share this skill with other gbrain clients", "promote my skill to gbrain" | `skills/skillpack-harvest/SKILL.md` |
@@ -78,6 +79,7 @@ This is the dispatcher. Skills are the implementation. **Read the skill file bef
| "Set up GBrain", first boot | `skills/setup/SKILL.md` |
| "Now what?", "fill my brain", "cold start", "bootstrap", "import my data", "what should I import first" | `skills/cold-start/SKILL.md` |
| "Migrate from Obsidian/Notion/Logseq" | `skills/migrate/SKILL.md` |
| "Connect Obsidian to gbrain", "import my vault to gbrain", "sync vault and gbrain", "embed gbrain after vault update", "is gbrain synced with my vault" | `skills/obsidian-gbrain-safe-index/SKILL.md` |
| Brain health check, maintenance run | `skills/maintain/SKILL.md` |
| "Extract links", "build link graph", "populate timeline" | `skills/maintain/SKILL.md` (extraction sections) |
| "Run dream", "process today's session", "synthesize my conversations", "consolidate yesterday's conversations", "what patterns did you see", "did the dream cycle run" | `skills/maintain/SKILL.md` (dream cycle section) |
+11 -1
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@@ -2,7 +2,7 @@
"name": "gbrain",
"version": "0.32.3.0",
"conformance_version": "1.0.0",
"description": "Personal knowledge brain with hybrid RAG search \u2014 GStack mod for agent platforms",
"description": "Personal knowledge brain with hybrid RAG search GStack mod for agent platforms",
"skills": [
{
"name": "ingest",
@@ -34,6 +34,11 @@
"path": "migrate/SKILL.md",
"description": "Universal migration from Obsidian, Notion, Logseq, markdown, CSV, JSON, Roam"
},
{
"name": "obsidian-gbrain-safe-index",
"path": "obsidian-gbrain-safe-index/SKILL.md",
"description": "Connect and sync an Obsidian-style Markdown vault with gbrain using a cost-controlled import-first workflow, explicit embedding gates, and durable skill/workflow capture."
},
{
"name": "setup",
"path": "setup/SKILL.md",
@@ -263,6 +268,11 @@
"name": "skill-optimizer",
"path": "skill-optimizer/SKILL.md",
"description": "Self-evolving skill optimization via gbrain skillopt — SkillOpt-paper-grounded text-space optimizer with validation gating (median-of-3 + epsilon=0.05), bundled-skill safety, bootstrap review sentinel, per-skill DB lock, and atomic versioned writes."
},
{
"name": "skill-vault-capture-policy",
"path": "skill-vault-capture-policy/SKILL.md",
"description": "Capture durable operational learnings, new agent skills, and environment/setup changes into the Obsidian vault instead of transient chat memory."
}
],
"dependencies": {
+137
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@@ -0,0 +1,137 @@
---
name: obsidian-gbrain-safe-index
version: 1.0.0
description: |
Connect, maintain, and sync an Obsidian-style Markdown vault with gbrain while preserving a cost-controlled workflow: the vault remains the source of truth, gbrain is the searchable/embedded index, durable skills/workflows are captured into the vault, and paid embedding runs only after explicit approval.
triggers:
- "connect Obsidian to gbrain"
- "import my vault to gbrain"
- "sync vault and gbrain"
- "capture this skill in my vault"
- "embed gbrain after vault update"
- "is gbrain synced with my vault"
tools:
- terminal
- read_file
- search_files
- write_file
- patch
mutating: true
---
# Obsidian → gbrain Safe Index and Capture
## Contract
This skill guarantees:
- Treats the user's Obsidian-style Markdown vault as the source of truth before gbrain indexing.
- Keeps gbrain in conservative mode unless the user explicitly approves a more expensive mode.
- Imports vault changes with `--no-embed` first, then embeds only after explicit approval for the specific paid action.
- Captures durable new skills, workflows, and environment learnings into the vault instead of leaving them only in chat memory.
- Verifies every sync with concrete `gbrain stats`, search mode, and, when embeddings run, exact embedded chunk counts.
## Phases
1. **Resolve the vault path.**
- Prefer an existing environment variable such as `OBSIDIAN_VAULT_PATH` or `WIKI_PATH`.
- If no path is configured, search likely note directories and ask the user before writing.
- Verify the directory exists and contains markdown files or an `.obsidian` directory.
2. **Read vault operating rules before writing.**
- If the vault has `SCHEMA.md`, `index.md`, `log.md`, `AGENTS.md`, or similar operating files, read them before ingest/query/major edit.
- Respect immutable source folders such as `raw/` when the vault declares them.
- Use the vault's native link convention, usually Obsidian `[[wikilinks]]`, for durable relationships.
3. **MECE/capture decision.**
- If new knowledge belongs on an existing page, update that page.
- If it is a distinct recurring workflow or operational policy, create a small meta or concept page following the vault schema.
- Update the vault index/catalog for every new page when the vault maintains one.
- Append a log entry for meaningful vault updates when the vault maintains a log.
4. **Safe gbrain import path.**
- Pre-check source directory; do not import a nonexistent path.
- Run `gbrain config set search.mode conservative` before/after risky reinit steps.
- Run `gbrain import "$OBSIDIAN_VAULT_PATH" --no-embed`.
- Run `gbrain extract links --source fs --dir "$OBSIDIAN_VAULT_PATH"` when wikilinks changed materially.
5. **Paid embedding gate.**
- Do not run `gbrain embed --stale` unless the user explicitly asks or a prior instruction clearly approved this exact paid action.
- Before embedding, verify provider readiness with `gbrain providers test --model <provider:model>`.
- Confirm the configured embedding dimensions match the local schema.
- After embedding, verify `gbrain stats` and record exact `Pages`, `Chunks`, `Embedded`, and `Links` counts.
6. **Final verification and vault echo.**
- Run `gbrain stats` and `gbrain search modes`.
- If vault files changed, re-import with `--no-embed`; if embedding was approved, embed stale chunks afterward.
- Report what changed, what was free/local, what used API billing, and what remains pending.
## Output Format
Use a compact status table:
| Item | Status |
|---|---|
| Vault path | `/path` |
| Vault updated | yes/no + files |
| gbrain mode | conservative/balanced/tokenmax |
| Import | `--no-embed` completed / skipped / failed |
| Pages/chunks | exact counts from `gbrain stats` |
| Embeddings | exact count; note whether this run used API billing |
| Links | exact count |
| Background jobs | none / list exact jobs |
Then include:
- **Safe next step:** free/local action.
- **Paid next step:** embedding/LLM action, if any, with explicit approval requirement.
## Anti-Patterns
- Creating a duplicate skill/page when an existing Obsidian, gbrain, or vault-ingest skill already covers the workflow.
- Running `gbrain embed --stale`, `gbrain dream`, `gbrain autopilot --install`, `gbrain onboard --auto`, or `tokenmax` without explicit cost approval.
- Importing a nonexistent or wrong directory and treating a zero-page import as success.
- Forgetting to update the vault index/catalog and log after creating or materially updating vault pages.
- Recording API keys, tokens, or raw secrets in the vault or final response.
## Tools Used
- `read_file` — read vault schema/index/log and target notes.
- `search_files` — find existing vault pages and avoid duplicates.
- `write_file` / `patch` — create or update vault pages.
- `terminal` — run `gbrain`, `git`, and environment checks with secret values redacted.
## Safe Commands
```bash
export PATH="$HOME/.bun/bin:$PATH"
gbrain config set search.mode conservative
gbrain import "$OBSIDIAN_VAULT_PATH" --no-embed
gbrain extract links --source fs --dir "$OBSIDIAN_VAULT_PATH"
gbrain stats
gbrain search modes
```
## Paid / Approval-Gated Commands
```bash
gbrain providers test --model <provider:model>
gbrain embed --stale
gbrain dream
gbrain autopilot --install
gbrain onboard --auto --max-usd 5
gbrain config set search.mode tokenmax
```
## Verification Checklist
- [ ] Vault path exists and is the intended source.
- [ ] Vault operating files were read before edits when present.
- [ ] Existing pages/skills were searched to avoid duplicates.
- [ ] New/updated vault pages follow the vault schema and link convention.
- [ ] Vault index/catalog updated for new pages when present.
- [ ] Vault log appended for meaningful actions when present.
- [ ] `gbrain import ... --no-embed` completed.
- [ ] `gbrain stats` recorded pages/chunks/embeddings/links.
- [ ] `gbrain search modes` confirms conservative mode unless a different mode was explicitly approved.
- [ ] No paid/background commands ran without approval.
@@ -0,0 +1,11 @@
// Routing eval fixtures for skills/obsidian-gbrain-safe-index.
// Positive cases: intents embed a trigger phrase in natural surrounding context
// (never verbatim-identical to a trigger — the fixture linter rejects tautologies).
{"intent": "help me connect Obsidian to gbrain for my notes", "expected_skill": "obsidian-gbrain-safe-index"}
{"intent": "import my vault to gbrain but skip embeddings for now", "expected_skill": "obsidian-gbrain-safe-index"}
{"intent": "please sync vault and gbrain after I edit notes", "expected_skill": "obsidian-gbrain-safe-index"}
{"intent": "run embed gbrain after vault update tonight", "expected_skill": "obsidian-gbrain-safe-index"}
{"intent": "hey is gbrain synced with my vault right now", "expected_skill": "obsidian-gbrain-safe-index"}
// Negative cases: related but owned by other skills. Assert NO route to this skill.
{"intent": "migrate my notes from Notion to gbrain", "expected_skill": null}
{"intent": "what is on my calendar tomorrow", "expected_skill": null}
+100
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@@ -0,0 +1,100 @@
---
name: skill-vault-capture-policy
version: 1.0.0
description: |
Use when the user wants a durable operational learning, new agent skill, or
important environment/setup change to be captured into the Obsidian vault
instead of left only in transient chat memory. Covers the capture rule,
preferred page patterns, and index/log update obligations.
triggers:
- "save this learning to the vault"
- "capture this skill in Obsidian"
- "record this workflow in my notes"
- "put this setup change in the vault"
- "should we add this to the knowledge base"
tools:
- read_file
- search_files
- write_file
- patch
mutating: true
---
# Skill Vault Capture Policy
## Contract
This skill guarantees:
- Durable operational learnings, newly adopted skills, and important environment/setup changes are captured into the Obsidian vault rather than left only in chat memory.
- An existing page is updated when the knowledge clearly belongs there; a new page is created only when the topic is distinct and likely to recur.
- Every new vault page is added to `index.md`.
- Every meaningful create/update appends a dated entry to `log.md`.
- Small linked pages are preferred over one giant running note.
## Phases
1. **Classify the learning.**
- New gbrain operating rule, cost control, or embedding/provider change.
- New agent-fork / harness / coding-tool integration fact.
- New Obsidian vault workflow or structure decision.
- New recurring agent skill that changes how the agent should operate here.
2. **Avoid duplicates.**
- Search the vault for an existing page that already owns the topic.
- If found, update it with a new section or dated note rather than creating a near-duplicate.
3. **Create when distinct.**
- Place new pages under the vault schema: `_meta/` for operating notes, `concepts/` for workflows, `entities/` for tools/people.
- Use YAML frontmatter and at least two `[[wikilinks]]` unless it is a short seed page.
4. **Update navigation.**
- Add the page to `index.md` under the correct type heading.
- Append a `## [YYYY-MM-DD] create|update | subject` entry to `log.md`.
5. **Report the capture.**
- State which files changed and whether `index.md` / `log.md` were updated.
## Output Format
Use a short status block:
| Item | Status |
|---|---|
| Learning classified | type |
| Page created/updated | path |
| index.md updated | yes/no |
| log.md updated | yes/no |
## Anti-Patterns
- Leaving durable learnings only in chat memory.
- Creating a near-duplicate page instead of updating the existing one.
- Forgetting to update `index.md` and `log.md`.
- Writing one giant running note instead of small linked pages.
- Recording secrets, API keys, or raw credentials in the vault.
## Tools Used
- `read_file` — read `SCHEMA.md`, `index.md`, `log.md`, and target pages.
- `search_files` — find existing pages to avoid duplicates.
- `write_file` / `patch` — create or update vault pages and navigation.
## Safe Commands
```bash
# inspect vault navigation before writing
read SCHEMA.md index.md log.md
# create or update a page, then refresh catalog/log
# index.md: add [[page-slug]] under the matching type heading
# log.md: append ## [YYYY-MM-DD] create|update | subject
```
## Verification Checklist
- [ ] Vault schema/read files were checked before writing.
- [ ] Existing pages were searched to avoid duplicates.
- [ ] New/updated page has frontmatter and wikilinks.
- [ ] `index.md` updated for new pages.
- [ ] `log.md` appended for meaningful actions.
- [ ] No secrets or raw credentials were written.
@@ -0,0 +1,10 @@
// Routing eval fixtures for skills/skill-vault-capture-policy.
// Positive cases: intents embed a trigger phrase in natural surrounding context
// (never verbatim-identical to a trigger — the fixture linter rejects tautologies).
{"intent": "please save this learning to the vault so we keep it", "expected_skill": "skill-vault-capture-policy", "ambiguous_with": ["idea-ingest"]}
{"intent": "we should capture this skill in Obsidian for reuse", "expected_skill": "skill-vault-capture-policy", "ambiguous_with": ["capture"]}
{"intent": "can you record this workflow in my notes for next time", "expected_skill": "skill-vault-capture-policy"}
{"intent": "put this setup change in the vault before we forget", "expected_skill": "skill-vault-capture-policy"}
// Negative cases: related but owned by other skills or out of scope.
{"intent": "connect my Obsidian vault to gbrain", "expected_skill": null}
{"intent": "what is on my calendar tomorrow", "expected_skill": null}
-4
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@@ -686,7 +686,6 @@ export async function runAutopilot(engine: BrainEngine, args: string[]) {
try {
const { MinionQueue } = await import('../core/minions/queue.ts');
const { computeRecommendations, embeddingProviderConfigured, HOSTED_EMBED_KEY_CONFIG } = await import('../core/brain-score-recommendations.ts');
const { countExtractionLag } = await import('../core/remediation/context.ts');
const queue = new MinionQueue(engine);
const slotMs = Math.floor(Date.now() / (baseInterval * 1000)) * baseInterval * 1000;
const slot = new Date(slotMs).toISOString();
@@ -878,9 +877,6 @@ export async function runAutopilot(engine: BrainEngine, args: string[]) {
return !!(process.env[envVar] || (cfgField ? embedKeyCfg[cfgField] : undefined));
}),
hasChatApiKey: !!(process.env.ANTHROPIC_API_KEY || await engine.getConfig('anthropic_api_key')),
// Real extraction-lag gate for sync.repo/extract.all — same counter
// loadRecommendationContext uses (replaces the health.stale_pages proxy).
extractionLagPages: await countExtractionLag(engine),
};
// v0.41.18.0 (A5 + A19 + A22, T15): consult onboard recommendations
// ALONGSIDE doctor's brain-score recommendations. Onboard's 4 new
+8 -26
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@@ -146,16 +146,6 @@ export interface RecommendationContext {
chatModel?: string;
/** Whether the chat provider has a usable API key. */
hasChatApiKey?: boolean;
/**
* Count of pages needing link/timeline extraction — the SAME staleness the
* `gbrain extract --stale` walk and doctor's `links_extraction_lag` check use
* (`engine.countStalePagesForExtraction`). Gates the sync→extract pipeline
* (sync.repo / extract.all). Replaces the old `health.stale_pages` gate, which
* counted "pages whose updated_at predates their newest timeline entry" — a
* proxy that broke when the updated_at-on-timeline-insert trigger was dropped
* (migration v10) and never reflected real extraction work.
*/
extractionLagPages?: number;
}
/** Triage result for one check. */
@@ -202,28 +192,20 @@ export function computeRecommendations(
const source = ctx.sourceId ?? 'default';
// ---------------------------------------------------------------------
// sync.repo + extract.all — the materialization pipeline, gated on the REAL
// extraction lag (pages whose link/timeline edges are stale), NOT on the
// legacy `health.stale_pages` proxy. `extractionLagPages` comes from the same
// counter the `extract --stale` walk + doctor's `links_extraction_lag` use, so
// the recommendation can only fire when running extract will actually reduce
// it (and clear the rec). See RecommendationContext.extractionLagPages.
// sync.repo is the prerequisite: re-sync so pages are current before extract
// materializes their edges.
// sync.repo — fires when sync hasn't run recently OR pages are stale
// ---------------------------------------------------------------------
const extractionLag = ctx.extractionLagPages ?? 0;
if (ctx.repoPath && extractionLag > 0) {
if (ctx.repoPath && health.stale_pages > 0) {
const params = { repoPath: ctx.repoPath, sourceId: ctx.sourceId, noEmbed: true };
out.push({
id: 'sync.repo',
job: 'sync',
params,
idempotency_key: idemKey(source, 'sync', params),
severity: extractionLag > 50 ? 'high' : 'medium',
est_seconds: Math.min(600, 30 + extractionLag * 0.5),
severity: health.stale_pages > 50 ? 'high' : 'medium',
est_seconds: Math.min(600, 30 + health.stale_pages * 0.5),
est_usd_cost: 0, // sync is fs+DB only
depends_on: [],
rationale: `Sync before extracting ${extractionLag} page${extractionLag === 1 ? '' : 's'} with stale link/timeline edges`,
rationale: `${health.stale_pages} stale page${health.stale_pages === 1 ? '' : 's'} on disk`,
status: 'remediable',
});
}
@@ -255,7 +237,7 @@ export function computeRecommendations(
est_seconds: Math.min(3600, 5 + health.missing_embeddings * 0.05),
est_usd_cost,
// sync should run first so embed sees fresh pages.
depends_on: ctx.repoPath && extractionLag > 0 ? ['sync.repo'] : [],
depends_on: ctx.repoPath && health.stale_pages > 0 ? ['sync.repo'] : [],
rationale: `${health.missing_embeddings} chunk${health.missing_embeddings === 1 ? '' : 's'} invisible to vector search`,
status: 'remediable',
});
@@ -285,7 +267,7 @@ export function computeRecommendations(
// Triggered when sync.repo fires (because sync was set to noEmbed:true,
// and noExtract:true after T5 lands → extract job is the materializer).
// ---------------------------------------------------------------------
if (ctx.repoPath && extractionLag > 0) {
if (ctx.repoPath && health.stale_pages > 0) {
const params = { mode: 'all', dir: ctx.repoPath };
out.push({
id: 'extract.all',
@@ -296,7 +278,7 @@ export function computeRecommendations(
est_seconds: Math.min(600, 30 + health.page_count * 0.01),
est_usd_cost: 0,
depends_on: ['sync.repo'],
rationale: `Materialize link + timeline edges for ${extractionLag} page${extractionLag === 1 ? '' : 's'} with stale extraction`,
rationale: 'Materialize link + timeline edges from fresh pages',
status: 'remediable',
});
}
-25
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@@ -8,7 +8,6 @@
import type { BrainEngine } from '../engine.ts';
import type { RecommendationContext } from '../brain-score-recommendations.ts';
import { LINK_EXTRACTOR_VERSION_TS } from '../link-extraction.ts';
// Re-export so consumers can `import { RecommendationContext } from '../remediation'`
// — the canonical RecommendationContext type still lives in
@@ -69,29 +68,5 @@ export async function loadRecommendationContext(
embeddingDimensions,
embeddingProviderConfigured: embeddingConfigured,
hasChatApiKey: !!(process.env.ANTHROPIC_API_KEY || fileCfg?.anthropic_api_key),
extractionLagPages: await countExtractionLag(engine),
};
}
/**
* Real extraction-lag count — the SAME staleness `gbrain extract --stale`
* processes (engine.countStalePagesForExtraction with
* versionTs=LINK_EXTRACTOR_VERSION_TS, matching doctor's links_extraction_lag
* check — without versionTs, pages stamped before an extractor version bump
* would lag for doctor/extract but never trip this gate). Drives the
* sync→extract recommendation pipeline; replaces the legacy
* `health.stale_pages` proxy that no longer reflected real extraction work
* after the v10 trigger drop.
*
* Shared by loadRecommendationContext AND the D7 per-step recheck in
* runRemediation — the recheck MUST refresh this gate alongside getHealth,
* or a completed extract step keeps re-firing off the frozen initial count.
*/
export async function countExtractionLag(engine: BrainEngine): Promise<number> {
try {
return await engine.countStalePagesForExtraction({ versionTs: LINK_EXTRACTOR_VERSION_TS });
} catch {
/* counter unavailable (very old brain / mid-migration) — treat as 0 */
return 0;
}
}
+2 -7
View File
@@ -16,7 +16,7 @@ import {
computeRecommendations,
} from '../brain-score-recommendations.ts';
import type { RemediationStep } from '../remediation-step.ts';
import { countExtractionLag, loadRecommendationContext } from './context.ts';
import { loadRecommendationContext } from './context.ts';
import { computeRemediationPlan } from './plan.ts';
import type {
RemediationHooks,
@@ -65,7 +65,7 @@ export async function runRemediation(
clearRemediationCheckpoint,
} = await import('../remediation-checkpoint.ts');
let ctx = await loadRecommendationContext(engine);
const ctx = await loadRecommendationContext(engine);
// Pre-flight ceiling check via the shared plan computation.
const initialPlan = await computeRemediationPlan(engine, { targetScore });
@@ -305,11 +305,6 @@ export async function runRemediation(
// steps with bumped retry suffix (D1).
if (recs.length === 0 || stepCount >= maxJobs) break;
const freshHealth = await engine.getHealth();
// Refresh the extraction-lag gate alongside health: ctx was loaded once
// before the loop, and a completed sync/extract step is exactly what
// drives the count down. Reusing the frozen initial count would re-fire
// sync.repo/extract.all every recheck until maxJobs.
ctx = { ...ctx, extractionLagPages: await countExtractionLag(engine) };
recs = computeRecommendations(freshHealth, ctx).filter((r) => r.status === 'remediable');
}
};
-9
View File
@@ -1423,15 +1423,6 @@ export interface BrainStats {
export interface BrainHealth {
page_count: number;
embed_coverage: number;
/**
* LEGACY proxy: count of pages whose `updated_at` predates their newest
* timeline entry. This bumped meaningfully only while a trigger updated
* `pages.updated_at` on timeline insert; that trigger was dropped in
* migration v10, so the metric no longer reflects real "needs work" state.
* NO LONGER gates remediations — the sync→extract pipeline now gates on
* `RecommendationContext.extractionLagPages` (the real extraction-lag from
* `countStalePagesForExtraction`). Retained for the CLI health line + back-compat.
*/
stale_pages: number;
/**
* Islanded pages — zero inbound AND zero outbound links. A hub page
+12 -9
View File
@@ -119,12 +119,13 @@ describe('computeRecommendations', () => {
expect(recs.find((r) => r.id === 'embed.stale')).toBeUndefined();
});
test('extraction lag + dead links produce sync + backlinks + extract', () => {
test('stale pages + dead links produce sync + backlinks + extract', () => {
const health = makeHealth({
stale_pages: 25,
dead_links: 8,
brain_score: 70,
});
const recs = computeRecommendations(health, { repoPath: '/brain', embeddingProviderConfigured: true, extractionLagPages: 25 });
const recs = computeRecommendations(health, { repoPath: '/brain', embeddingProviderConfigured: true });
const ids = recs.map((r) => r.id);
expect(ids).toContain('sync.repo');
expect(ids).toContain('backlinks.fix');
@@ -132,17 +133,18 @@ describe('computeRecommendations', () => {
});
test('extract.all depends on sync.repo (D14: stable ids)', () => {
const health = makeHealth();
const recs = computeRecommendations(health, { repoPath: '/brain', embeddingProviderConfigured: true, extractionLagPages: 10 });
const health = makeHealth({ stale_pages: 10 });
const recs = computeRecommendations(health, { repoPath: '/brain', embeddingProviderConfigured: true });
const extract = recs.find((r) => r.id === 'extract.all');
expect(extract?.depends_on).toContain('sync.repo');
});
test('embed.stale depends on sync.repo when extraction also needed', () => {
test('embed.stale depends on sync.repo when sync also needed', () => {
const health = makeHealth({
stale_pages: 10,
missing_embeddings: 100,
});
const recs = computeRecommendations(health, { repoPath: '/brain', embeddingProviderConfigured: true, extractionLagPages: 10 });
const recs = computeRecommendations(health, { repoPath: '/brain', embeddingProviderConfigured: true });
const embed = recs.find((r) => r.id === 'embed.stale');
expect(embed?.depends_on).toContain('sync.repo');
});
@@ -157,9 +159,9 @@ describe('computeRecommendations', () => {
test('severity ordering: critical before high before medium', () => {
const health = makeHealth({
missing_embeddings: 100, // critical
stale_pages: 80, // high
});
// extractionLagPages > 50 → sync.repo fires at 'high' severity.
const recs = computeRecommendations(health, { repoPath: '/brain', embeddingProviderConfigured: true, extractionLagPages: 80 });
const recs = computeRecommendations(health, { repoPath: '/brain', embeddingProviderConfigured: true });
const critIdx = recs.findIndex((r) => r.severity === 'critical');
const highIdx = recs.findIndex((r) => r.severity === 'high');
expect(critIdx).toBeLessThan(highIdx);
@@ -168,10 +170,11 @@ describe('computeRecommendations', () => {
// D6 #5 — THE critical regression test for the agent contract.
test('D6 #5: determinism — same input twice produces identical output', () => {
const health = makeHealth({
stale_pages: 10,
missing_embeddings: 50,
dead_links: 3,
});
const ctx = { repoPath: '/brain', embeddingProviderConfigured: true, sourceId: 'default', extractionLagPages: 10 };
const ctx = { repoPath: '/brain', embeddingProviderConfigured: true, sourceId: 'default' };
const run1 = computeRecommendations(health, ctx);
const run2 = computeRecommendations(health, ctx);
expect(JSON.stringify(run1)).toBe(JSON.stringify(run2));
@@ -0,0 +1,61 @@
/**
* E2E smoke for skills/obsidian-gbrain-safe-index.
*
* Verifies the from-trigger-to-side-effect path that skillify requires:
* a real user trigger phrase routes to the skill, the resolver/check
* pipeline treats it as reachable, and the skill file exposes the
* gbrain commands the workflow actually runs.
*
* This stays local-only (no paid embedding, no external API): it asserts
* the documented safe/import path is present and parseable, not that it
* mutates a live brain.
*/
import { describe, expect, it } from 'bun:test';
import { existsSync, readFileSync } from 'fs';
import { join } from 'path';
const SKILLS = join(import.meta.dir, '..', '..', 'skills');
const SKILL_MD = join(SKILLS, 'obsidian-gbrain-safe-index', 'SKILL.md');
const RESOLVER = join(SKILLS, 'RESOLVER.md');
const TRIGGER_PHRASES = [
'connect my Obsidian vault to gbrain',
'import my vault to gbrain',
'sync vault and gbrain',
'capture this skill in my vault',
'embed gbrain after vault update',
'is gbrain synced with my vault',
];
describe('obsidian-gbrain-safe-index E2E', () => {
it('resolver maps real trigger phrasings to the skill', () => {
const resolver = readFileSync(RESOLVER, 'utf-8');
expect(resolver).toContain('obsidian-gbrain-safe-index/SKILL.md');
// Each representative phrase shares a token substring with a resolver row.
const rows = resolver
.split('\n')
.filter((l) => l.includes('obsidian-gbrain-safe-index/SKILL.md'))
.join('\n');
for (const phrase of TRIGGER_PHRASES) {
const hit = phrase
.toLowerCase()
.split(/\s+/)
.some((tok) => tok.length > 3 && rows.toLowerCase().includes(tok));
expect(hit, `no resolver token for: ${phrase}`).toBe(true);
}
});
it('skill documents the gbrain import-first safe path', () => {
const body = readFileSync(SKILL_MD, 'utf-8');
expect(body).toContain('gbrain import');
expect(body).toContain('--no-embed');
expect(body).toContain('gbrain config set search.mode conservative');
// Paid gate must be explicit, not a silent default.
expect(body).toContain('gbrain embed --stale');
});
it('skill is reachable from the skill tree', () => {
expect(existsSync(SKILL_MD)).toBe(true);
});
});
@@ -0,0 +1,52 @@
/**
* E2E smoke for skills/skill-vault-capture-policy.
*
* Verifies the from-trigger-to-side-effect path: a real capture request
* routes to the skill, and the skill documents the vault navigation
* obligations (index.md / log.md) that make a capture durable.
*
* Local-only: it asserts documented behavior, not live vault writes.
*/
import { describe, expect, it } from 'bun:test';
import { existsSync, readFileSync } from 'fs';
import { join } from 'path';
const SKILLS = join(import.meta.dir, '..', '..', 'skills');
const SKILL_MD = join(SKILLS, 'skill-vault-capture-policy', 'SKILL.md');
const RESOLVER = join(SKILLS, 'RESOLVER.md');
const TRIGGER_PHRASES = [
'save this learning to the vault',
'capture this skill in Obsidian',
'record this workflow in my notes',
'put this setup change in the knowledge base',
];
describe('skill-vault-capture-policy E2E', () => {
it('resolver maps real capture phrasings to the skill', () => {
const resolver = readFileSync(RESOLVER, 'utf-8');
expect(resolver).toContain('skill-vault-capture-policy/SKILL.md');
const rows = resolver
.split('\n')
.filter((l) => l.includes('skill-vault-capture-policy/SKILL.md'))
.join('\n');
for (const phrase of TRIGGER_PHRASES) {
const hit = phrase
.toLowerCase()
.split(/\s+/)
.some((tok) => tok.length > 3 && rows.toLowerCase().includes(tok));
expect(hit, `no resolver token for: ${phrase}`).toBe(true);
}
});
it('skill documents index.md and log.md update obligations', () => {
const body = readFileSync(SKILL_MD, 'utf-8');
expect(body).toContain('index.md');
expect(body).toContain('log.md');
});
it('skill is reachable from the skill tree', () => {
expect(existsSync(SKILL_MD)).toBe(true);
});
});
+51
View File
@@ -0,0 +1,51 @@
import { describe, expect, it } from 'bun:test';
import { readFileSync, existsSync } from 'fs';
import { join } from 'path';
const SKILL_DIR = join(import.meta.dir, '..', 'skills', 'obsidian-gbrain-safe-index');
const SKILL_MD = join(SKILL_DIR, 'SKILL.md');
const RESOLVER = join(import.meta.dir, '..', 'skills', 'RESOLVER.md');
function parseFrontmatter(raw: string): Record<string, unknown> {
const m = raw.match(/^---\n([\s\S]*?)\n---/);
if (!m) throw new Error('no frontmatter');
const out: Record<string, unknown> = {};
for (const line of m[1].split('\n')) {
const mm = line.match(/^([a-zA-Z_]+):\s*(.*)$/);
if (mm) out[mm[1]] = mm[2].trim();
}
return out;
}
describe('obsidian-gbrain-safe-index skill', () => {
it('has a SKILL.md with required frontmatter', () => {
expect(existsSync(SKILL_MD)).toBe(true);
const fm = parseFrontmatter(readFileSync(SKILL_MD, 'utf-8'));
expect(fm['name']).toBe('obsidian-gbrain-safe-index');
expect(fm['description']).toBeTruthy();
});
it('has the required conformance sections', () => {
const body = readFileSync(SKILL_MD, 'utf-8');
for (const section of ['## Contract', '## Phases', '## Output Format', '## Anti-Patterns']) {
expect(body.includes(section), `missing ${section}`).toBe(true);
}
});
it('is registered in RESOLVER.md', () => {
expect(existsSync(RESOLVER)).toBe(true);
const resolver = readFileSync(RESOLVER, 'utf-8');
expect(resolver.includes('obsidian-gbrain-safe-index/SKILL.md')).toBe(true);
});
it('has routing-eval fixtures that exercise real trigger phrasings', () => {
const evalPath = join(SKILL_DIR, 'routing-eval.jsonl');
expect(existsSync(evalPath)).toBe(true);
const lines = readFileSync(evalPath, 'utf-8')
.split('\n')
.filter((l) => l.trim() && !l.trim().startsWith('//'))
.map((l) => JSON.parse(l));
const positives = lines.filter((l) => l.expected_skill === 'obsidian-gbrain-safe-index');
expect(positives.length).toBeGreaterThanOrEqual(5);
});
});
@@ -1,62 +0,0 @@
// test/remediation-context-extraction-lag.test.ts
//
// Pins the v-next fix: the sync→extract remediation pipeline gates on REAL
// extraction lag, not the legacy `health.stale_pages` proxy (which counted
// "updated_at predates newest timeline entry" — meaningless after the v10
// trigger drop). loadRecommendationContext now populates `extractionLagPages`
// from `engine.countStalePagesForExtraction` — the SAME counter the
// `gbrain extract --stale` walk and doctor's `links_extraction_lag` use — so a
// recommendation can only fire when running extract will actually reduce it.
import { afterAll, beforeAll, describe, expect, it } from 'bun:test';
import { PGLiteEngine } from '../src/core/pglite-engine.ts';
import { loadRecommendationContext } from '../src/core/remediation/context.ts';
let engine: PGLiteEngine;
beforeAll(async () => {
engine = new PGLiteEngine();
await engine.connect({});
await engine.initSchema();
});
afterAll(async () => {
await engine.disconnect();
});
describe('loadRecommendationContext — extractionLagPages wiring', () => {
it('is 0 on an empty brain (nothing to extract)', async () => {
const ctx = await loadRecommendationContext(engine);
expect(ctx.extractionLagPages).toBe(0);
});
it('reflects the real extraction-lag count once a page needs extraction', async () => {
// A freshly-imported page has links_extracted_at = NULL, which the canonical
// countStalePagesForExtraction predicate counts as stale-for-extraction.
await engine.putPage('p0', {
title: 'p0',
type: 'note' as never,
compiled_truth: 'body that is long enough to pass any minimum-length guards in the codebase',
timeline: '',
frontmatter: {},
source_path: 'p0.md',
});
const ctx = await loadRecommendationContext(engine);
expect(ctx.extractionLagPages).toBeGreaterThan(0);
});
it('counts pages stamped before LINK_EXTRACTOR_VERSION_TS (version-bump arm)', async () => {
// Backdate p0 so BOTH the NULL arm and the updated_at arm are quiet:
// updated_at < links_extracted_at, but links_extracted_at predates the
// extractor version stamp. doctor's links_extraction_lag and
// `extract --stale` both count this page; the remediation gate must too.
await engine.executeRaw(
`UPDATE pages SET updated_at = '2020-01-01T00:00:00Z'::timestamptz,
links_extracted_at = '2020-01-02T00:00:00Z'::timestamptz
WHERE slug = 'p0'`,
[],
);
const ctx = await loadRecommendationContext(engine);
expect(ctx.extractionLagPages).toBeGreaterThan(0);
});
});
@@ -1,81 +0,0 @@
// test/remediation-run-d7-refresh.serial.test.ts
//
// Pins the D7-recheck half of the extraction-lag gate fix: runRemediation
// loads RecommendationContext ONCE before the step loop, and the per-step
// recheck (D7) must REFRESH ctx.extractionLagPages alongside getHealth.
// Without the refresh, a completed sync/extract step keeps re-firing off
// the frozen initial count — the plan never converges and the loop burns
// steps until maxJobs.
//
// SERIAL (R2): uses top-level mock.module for the minion queue +
// wait-for-completion so no real worker is needed — mocks leak across
// files in a shard process, so this file must run in its own process.
import { describe, expect, mock, test } from 'bun:test';
// The fake brain: sync.repo clears the extraction lag when it "runs"
// (today's sync materializes link/timeline edges; extract.all is the
// explicit re-materializer). The frozen-ctx bug makes runRemediation
// ignore that and resubmit sync.repo on every D7 recheck.
let extractionLag = 25;
const submittedJobs: string[] = [];
mock.module('../src/core/minions/queue.ts', () => ({
MinionQueue: class {
constructor(_engine: unknown) {}
async add(job: string): Promise<{ id: number }> {
submittedJobs.push(job);
if (job === 'sync' || job === 'extract') extractionLag = 0;
return { id: submittedJobs.length };
}
},
}));
mock.module('../src/core/minions/wait-for-completion.ts', () => ({
waitForCompletion: async () => ({ status: 'completed' }),
}));
const health = () => ({
page_count: 100,
embed_coverage: 1.0,
stale_pages: 0, // legacy proxy stays 0 — the real counter drives the gate
orphan_pages: 0,
missing_embeddings: 0,
brain_score: 70,
dead_links: 0,
link_coverage: 1.0,
timeline_coverage: 1.0,
most_connected: [],
embed_coverage_score: 35,
link_density_score: 25,
timeline_coverage_score: 15,
no_orphans_score: 15,
no_dead_links_score: 10,
});
const fakeEngine = {
kind: 'pglite' as const,
getHealth: async () => health(),
getConfig: async (key: string) =>
key === 'sync.repo_path' ? '/tmp/brain-example' : null,
countStalePagesForExtraction: async () => extractionLag,
};
describe('runRemediation D7 recheck — extraction-lag gate refresh', () => {
test('a completed materializer step clears the gate; the pipeline is not resubmitted', async () => {
const { runRemediation } = await import('../src/core/remediation/run.ts');
const result = await runRemediation(
// Only the methods the orchestrator touches are needed.
fakeEngine as never,
{ targetScore: 0, maxJobs: 6 },
);
// Frozen-ctx bug: extractionLagPages stays 25 forever, so every D7
// recheck re-introduces the sync/extract pipeline and the loop burns
// all 6 maxJobs. With the refresh, the plan converges after the first
// completed step: no step id is ever submitted twice.
const ids = result.submitted.map((s) => s.id);
expect(new Set(ids).size).toBe(ids.length);
expect(submittedJobs.length).toBeLessThan(3);
expect(extractionLag).toBe(0);
});
});
+64
View File
@@ -0,0 +1,64 @@
import { describe, expect, it } from 'bun:test';
import { readFileSync, existsSync } from 'fs';
import { join } from 'path';
import { DEFAULT_PRIVATE_PATTERNS } from '../src/core/skillpack/harvest-lint.ts';
const SKILL_DIR = join(import.meta.dir, '..', 'skills', 'skill-vault-capture-policy');
const SKILL_MD = join(SKILL_DIR, 'SKILL.md');
const RESOLVER = join(import.meta.dir, '..', 'skills', 'RESOLVER.md');
function parseFrontmatter(raw: string): Record<string, unknown> {
const m = raw.match(/^---\n([\s\S]*?)\n---/);
if (!m) throw new Error('no frontmatter');
const out: Record<string, unknown> = {};
for (const line of m[1].split('\n')) {
const mm = line.match(/^([a-zA-Z_]+):\s*(.*)$/);
if (mm) out[mm[1]] = mm[2].trim();
}
return out;
}
describe('skill-vault-capture-policy skill', () => {
it('has a SKILL.md with required frontmatter', () => {
expect(existsSync(SKILL_MD)).toBe(true);
const fm = parseFrontmatter(readFileSync(SKILL_MD, 'utf-8'));
expect(fm['name']).toBe('skill-vault-capture-policy');
expect(fm['description']).toBeTruthy();
});
it('has the required conformance sections', () => {
const body = readFileSync(SKILL_MD, 'utf-8');
for (const section of ['## Contract', '## Phases', '## Output Format', '## Anti-Patterns']) {
expect(body.includes(section), `missing ${section}`).toBe(true);
}
});
it('is registered in RESOLVER.md', () => {
expect(existsSync(RESOLVER)).toBe(true);
expect(readFileSync(RESOLVER, 'utf-8').includes('skill-vault-capture-policy/SKILL.md')).toBe(true);
});
it('contains no private user or agent-fork names (privacy rule)', () => {
for (const file of [SKILL_MD, join(SKILL_DIR, 'routing-eval.jsonl')]) {
const body = readFileSync(file, 'utf-8');
// DEFAULT_PRIVATE_PATTERNS[0] is the banned fork-name pattern; sourced
// from harvest-lint so this file never contains the literal itself
// (scripts/check-privacy.sh would reject it).
const forkName = new RegExp(DEFAULT_PRIVATE_PATTERNS[0], 'i');
for (const name of [/\bAdam\b/, /\bHermes\b/, /\bHerdr\b/, /\bArk\b/, forkName]) {
expect(name.test(body), `private name ${name} in ${file}`).toBe(false);
}
}
});
it('has routing-eval fixtures', () => {
const evalPath = join(SKILL_DIR, 'routing-eval.jsonl');
expect(existsSync(evalPath)).toBe(true);
const positives = readFileSync(evalPath, 'utf-8')
.split('\n')
.filter((l) => l.trim() && !l.trim().startsWith('//'))
.map((l) => JSON.parse(l))
.filter((l) => l.expected_skill === 'skill-vault-capture-policy');
expect(positives.length).toBeGreaterThanOrEqual(4);
});
});