fix(autopilot): add --target to value-flag set so install targets survive positional translation

Review finding on #3103: --target is installDaemon's value flag
(macos | linux-systemd | ephemeral-container | linux-cron). The
translator only knew --repo/--interval, so `gbrain autopilot
--install --target linux-cron` misread the target value as an
unknown positional subcommand and exited 2 before installDaemon ran.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

docs/tutorials/improving-skills-with-skillopt.md

@@ -233,14 +233,13 @@ keep it or `git checkout` to throw it away. Nothing is committed for you.
 
 **For a skill that ships with gbrain** (anything under the gbrain repo's own
 `skills/`): SkillOpt refuses to overwrite it by default and writes the winner to
-`skills/<name>/skillopt/proposed.md` instead (while keeping `best.md` as the
-optimizer's current-best pointer), so an optimization pass can never silently
-mutate a skill other people depend on. Two ways to handle that:
+`skills/<name>/skillopt/best.md` instead, so an optimization pass can never
+silently mutate a skill other people depend on. Two ways to handle that:
 
 ```bash
 # See the proposed improvement without touching SKILL.md (works for ANY skill):
 gbrain skillopt meeting-prep --split 1:1:1 --no-mutate
-# → writes skills/meeting-prep/skillopt/proposed.md, updates best.md, and prints the proposal path.
+# → writes skills/meeting-prep/skillopt/best.md (the proposed rewrite), prints its path. Copy what you want.
 
 # Actually rewrite a bundled skill (explicit opt-in + an independent held-out set):
 gbrain skillopt brain-ops --split 1:1:1 --allow-mutate-bundled \

src/commands/autopilot.ts

@@ -151,6 +151,100 @@ export function shouldSpawnAutopilotWorker(args: string[]): boolean {
   return !args.includes('--no-worker');
 }
 
+/**
+ * #1525 — positional subcommand translation.
+ *
+ * Pre-fix, `gbrain autopilot status` silently fell through to "start daemon"
+ * because `runAutopilot()` only branched on flag forms (`--status`, etc.).
+ * `status` was treated as a stray positional and ignored.
+ *
+ * This translator maps known positional subcommands to their flag form so
+ * `autopilot status` is equivalent to `autopilot --status`, then rejects
+ * any unrecognized positional with a fail-loud error before any side
+ * effect (lockfile, daemon spawn, sync dispatch) runs.
+ *
+ * Scope decisions:
+ *   - Known aliases: `status` → `--status`, `install` → `--install`,
+ *     `uninstall` → `--uninstall`, `start` → (drop; default daemon launch).
+ *   - `stop` is intentionally NOT aliased here. Stopping a running daemon
+ *     is a new behavior (read PID from lock, SIGTERM, drain) that deserves
+ *     its own design and PR. Users typing `gbrain autopilot stop` today get
+ *     the unknown-positional error with the canonical alternatives.
+ *   - At most one positional allowed; multiple positionals fail loud.
+ */
+// Every flag that consumes the NEXT argv token. Missing one here makes the
+// translator misread the flag's value as a positional subcommand and exit 2
+// (e.g. `--install --target linux-cron`). Keep in sync with parseArg call sites.
+const AUTOPILOT_VALUE_FLAGS = new Set(['--repo', '--interval', '--target']);
+const AUTOPILOT_POSITIONAL_ALIASES: Record<string, string | null> = {
+  status: '--status',
+  install: '--install',
+  uninstall: '--uninstall',
+  start: null, // drop the positional; default behavior is daemon launch
+};
+
+export type PositionalTranslation =
+  | { ok: true; args: string[] }
+  | {
+      ok: false;
+      reason: 'unknown_subcommand' | 'multiple_subcommands';
+      message: string;
+    };
+
+export function translatePositionalSubcommands(args: string[]): PositionalTranslation {
+  const out: string[] = [];
+  let positionalSeen = false;
+  let i = 0;
+  while (i < args.length) {
+    const a = args[i];
+    if (AUTOPILOT_VALUE_FLAGS.has(a)) {
+      // Pass through the flag and its value untouched. If the value is
+      // missing at end-of-argv, fall through so the existing parseArg
+      // path can report the broken usage.
+      out.push(a);
+      if (i + 1 < args.length) {
+        out.push(args[i + 1]);
+        i += 2;
+      } else {
+        i += 1;
+      }
+      continue;
+    }
+    if (a.startsWith('-')) {
+      out.push(a);
+      i += 1;
+      continue;
+    }
+    // Positional subcommand.
+    if (positionalSeen) {
+      const known = Object.keys(AUTOPILOT_POSITIONAL_ALIASES).join(', ');
+      return {
+        ok: false,
+        reason: 'multiple_subcommands',
+        message: `Multiple subcommands given. Use only one of: ${known}.`,
+      };
+    }
+    positionalSeen = true;
+    if (a in AUTOPILOT_POSITIONAL_ALIASES) {
+      const alias = AUTOPILOT_POSITIONAL_ALIASES[a];
+      if (alias) out.push(alias);
+      i += 1;
+      continue;
+    }
+    const known = Object.keys(AUTOPILOT_POSITIONAL_ALIASES).join(', ');
+    return {
+      ok: false,
+      reason: 'unknown_subcommand',
+      message:
+        `Unknown subcommand: \`${a}\`.\n` +
+        `Allowed subcommands: ${known}.\n` +
+        `Or use the flag form: --status, --install, --uninstall.\n` +
+        `Run \`gbrain autopilot --help\` for full usage.`,
+    };
+  }
+  return { ok: true, args: out };
+}
+
 export function isPidAlive(pid: number): boolean {
   if (!Number.isFinite(pid) || pid <= 0) return false;
   try {
@@ -363,6 +457,11 @@ export async function runAutopilot(engine: BrainEngine, args: string[]) {
       '       gbrain autopilot --install [--repo <path>]\n' +
       '       gbrain autopilot --uninstall\n' +
       '       gbrain autopilot --status [--json]\n\n' +
+      'Subcommand aliases:\n' +
+      '       gbrain autopilot status     → --status\n' +
+      '       gbrain autopilot install    → --install\n' +
+      '       gbrain autopilot uninstall  → --uninstall\n' +
+      '       gbrain autopilot start      → (default daemon launch)\n\n' +
       'Self-maintaining brain daemon. Runs the full maintenance cycle\n' +
       '(lint + backlinks + sync + extract + embed + orphans) on an interval.\n\n' +
       'For a one-shot cron-triggered cycle, see `gbrain dream`.',
@@ -370,6 +469,16 @@ export async function runAutopilot(engine: BrainEngine, args: string[]) {
     return;
   }
 
+  // #1525: translate positional subcommands to their flag form BEFORE any
+  // side effect (lockfile, daemon spawn, sync dispatch). Unknown positionals
+  // fail loud here rather than silently starting the daemon.
+  const translated = translatePositionalSubcommands(args);
+  if (!translated.ok) {
+    console.error(translated.message);
+    process.exit(2);
+  }
+  args = translated.args;
+
   if (args.includes('--install')) {
     await installDaemon(engine, args);
     return;

src/core/skillopt/orchestrator.ts

@@ -93,13 +93,7 @@ import { resolveLrSchedule } from './lr-schedule.ts';
 import { preflight, formatPreflightReport } from './preflight.ts';
 import { isRejected, loadRejectedBuffer, makeRejectedEntry, saveRejectedBuffer } from './rejected-buffer.ts';
 import { runReflect, runOneShotRewrite, describeJudges } from './reflect.ts';
-import {
-  acceptCandidate,
-  proposedPath as proposedFilePath,
-  revertAllPending,
-  skillPath,
-  writeProposed,
-} from './version-store.ts';
+import { acceptCandidate, bestPath, revertAllPending, skillPath, writeProposed } from './version-store.ts';
 import { runValidationGate, scoreSkillOnTasks } from './validate-gate.ts';
 import { ROLLOUT_SUCCESS_THRESHOLD } from './types.ts';
 import type { SkillOptOpts, EditOp, RunReceipt, BenchmarkTask } from './types.ts';
@@ -708,9 +702,9 @@ async function runOptimizationLoop(
   // to the catch's assignment values only (it can't prove the async callback ran).
   const finalOutcome = outcome as 'accepted' | 'no_improvement' | 'aborted' | 'errored';
   if (!mutateDecision.mutate && finalOutcome === 'accepted') {
-    // writeProposed() emitted both the best pointer and the stable review
-    // artifact in the accept branch. SKILL.md remains untouched.
-    proposedPath = proposedFilePath(skillsDir, skillName);
+    // best.md was written by writeProposed() in the accept branch (no-mutate
+    // path); it doubles as proposed.md for human review. SKILL.md untouched.
+    proposedPath = bestPath(skillsDir, skillName);
   } else if (mutateDecision.mutate) {
     mutatedSkillFile = finalOutcome === 'accepted';
   }

src/core/skillopt/version-store.ts

@@ -23,7 +23,6 @@
  *
  *   history.json
  *   best.md
- *   proposed.md
  *   versions/
  *     v0001_e1_s1.md
  *     v0002_e1_s2.md
@@ -53,10 +52,6 @@ export function bestPath(skillsDir: string, skillName: string): string {
   return path.join(skilloptDir(skillsDir, skillName), 'best.md');
 }
 
-export function proposedPath(skillsDir: string, skillName: string): string {
-  return path.join(skilloptDir(skillsDir, skillName), 'proposed.md');
-}
-
 export function skillPath(skillsDir: string, skillName: string): string {
   return path.join(skillsDir, skillName, 'SKILL.md');
 }
@@ -176,18 +171,17 @@ export function acceptCandidate(input: AcceptInput): AcceptResult {
 }
 
 /**
- * Write the candidate to both `best.md` and `proposed.md` WITHOUT touching
- * SKILL.md or the history ledger. `best.md` remains the optimizer's current
- * best pointer; `proposed.md` is the stable human-review artifact promised by
- * `--no-mutate`. Returns the proposal path. Each write is atomic (.tmp + rename).
+ * Write the candidate to `best.md` (which doubles as `proposed.md`) WITHOUT
+ * touching SKILL.md or the history ledger. Used by the `--no-mutate` /
+ * bundled-without-allow paths: the optimizer found a better candidate but the
+ * caller opted out of in-place mutation, so we surface it for human review.
+ * Returns the path written. Atomic (.tmp + rename).
  */
 export function writeProposed(skillsDir: string, skillName: string, candidateText: string): string {
-  const best = bestPath(skillsDir, skillName);
-  const proposed = proposedPath(skillsDir, skillName);
-  fs.mkdirSync(path.dirname(best), { recursive: true });
-  atomicWrite(best, candidateText);
-  atomicWrite(proposed, candidateText);
-  return proposed;
+  const p = bestPath(skillsDir, skillName);
+  fs.mkdirSync(path.dirname(p), { recursive: true });
+  atomicWrite(p, candidateText);
+  return p;
 }
 
 /**

test/autopilot-positional-subcommands.test.ts

@@ -0,0 +1,197 @@
+/**
+ * Tests for translatePositionalSubcommands() — the v0.41.x #1525 fix that
+ * prevents `gbrain autopilot status` from silently starting the daemon.
+ *
+ * IRON RULE regression guard: the exact ticket repro (`gbrain autopilot
+ * status`) MUST translate to `--status`, not fall through to the default
+ * daemon launch. Verified by the "ticket-exact repro" case below.
+ */
+
+import { describe, test, expect } from 'bun:test';
+import { translatePositionalSubcommands } from '../src/commands/autopilot.ts';
+
+describe('translatePositionalSubcommands — known aliases', () => {
+  test('IRON RULE — `autopilot status` translates to `--status` (ticket #1525 repro)', () => {
+    const r = translatePositionalSubcommands(['status']);
+    expect(r.ok).toBe(true);
+    if (r.ok) expect(r.args).toEqual(['--status']);
+  });
+
+  test('`install` translates to `--install`', () => {
+    const r = translatePositionalSubcommands(['install']);
+    expect(r.ok).toBe(true);
+    if (r.ok) expect(r.args).toEqual(['--install']);
+  });
+
+  test('`uninstall` translates to `--uninstall`', () => {
+    const r = translatePositionalSubcommands(['uninstall']);
+    expect(r.ok).toBe(true);
+    if (r.ok) expect(r.args).toEqual(['--uninstall']);
+  });
+
+  test('`start` drops the positional (default daemon launch)', () => {
+    const r = translatePositionalSubcommands(['start']);
+    expect(r.ok).toBe(true);
+    if (r.ok) expect(r.args).toEqual([]);
+  });
+
+  test('`start --json` drops only the positional, keeps the flag', () => {
+    const r = translatePositionalSubcommands(['start', '--json']);
+    expect(r.ok).toBe(true);
+    if (r.ok) expect(r.args).toEqual(['--json']);
+  });
+});
+
+describe('translatePositionalSubcommands — flag/positional interleaving', () => {
+  test('`status --json` preserves the trailing flag', () => {
+    const r = translatePositionalSubcommands(['status', '--json']);
+    expect(r.ok).toBe(true);
+    if (r.ok) expect(r.args).toEqual(['--status', '--json']);
+  });
+
+  test('`--json status` preserves the leading flag', () => {
+    const r = translatePositionalSubcommands(['--json', 'status']);
+    expect(r.ok).toBe(true);
+    if (r.ok) expect(r.args).toEqual(['--json', '--status']);
+  });
+
+  test('`--repo /foo status` does not mis-classify the path as positional', () => {
+    const r = translatePositionalSubcommands(['--repo', '/foo', 'status']);
+    expect(r.ok).toBe(true);
+    if (r.ok) expect(r.args).toEqual(['--repo', '/foo', '--status']);
+  });
+
+  test('`--interval 300 install` does not mis-classify the number as positional', () => {
+    const r = translatePositionalSubcommands(['--interval', '300', 'install']);
+    expect(r.ok).toBe(true);
+    if (r.ok) expect(r.args).toEqual(['--interval', '300', '--install']);
+  });
+
+  test('`--install --target linux-cron` does not mis-classify the target as positional', () => {
+    // --target is installDaemon's value flag; its value must never be read
+    // as a positional subcommand (regression guard for the review fix).
+    const r = translatePositionalSubcommands(['--install', '--target', 'linux-cron']);
+    expect(r.ok).toBe(true);
+    if (r.ok) expect(r.args).toEqual(['--install', '--target', 'linux-cron']);
+  });
+
+  test('`install --target macos` keeps the alias translation and the target value', () => {
+    const r = translatePositionalSubcommands(['install', '--target', 'macos']);
+    expect(r.ok).toBe(true);
+    if (r.ok) expect(r.args).toEqual(['--install', '--target', 'macos']);
+  });
+
+  test('value-flag at end of argv with missing value passes through (so parseArg can report it)', () => {
+    const r = translatePositionalSubcommands(['--repo']);
+    expect(r.ok).toBe(true);
+    if (r.ok) expect(r.args).toEqual(['--repo']);
+  });
+
+  test('value-flag whose value looks like an alias is NOT translated', () => {
+    // `--repo status` means "use repo path 'status'", not "show status".
+    // Translator must not destructure the value of --repo.
+    const r = translatePositionalSubcommands(['--repo', 'status']);
+    expect(r.ok).toBe(true);
+    if (r.ok) expect(r.args).toEqual(['--repo', 'status']);
+  });
+});
+
+describe('translatePositionalSubcommands — pass-through cases', () => {
+  test('empty args returns empty args', () => {
+    const r = translatePositionalSubcommands([]);
+    expect(r.ok).toBe(true);
+    if (r.ok) expect(r.args).toEqual([]);
+  });
+
+  test('flag-only invocation passes through unchanged', () => {
+    const r = translatePositionalSubcommands(['--status', '--json']);
+    expect(r.ok).toBe(true);
+    if (r.ok) expect(r.args).toEqual(['--status', '--json']);
+  });
+
+  test('short flag `-h` passes through unchanged', () => {
+    const r = translatePositionalSubcommands(['-h']);
+    expect(r.ok).toBe(true);
+    if (r.ok) expect(r.args).toEqual(['-h']);
+  });
+
+  test('all known bare flags pass through unchanged', () => {
+    const flags = ['--help', '--install', '--uninstall', '--status', '--json', '--inline', '--no-worker'];
+    const r = translatePositionalSubcommands(flags);
+    expect(r.ok).toBe(true);
+    if (r.ok) expect(r.args).toEqual(flags);
+  });
+});
+
+describe('translatePositionalSubcommands — rejection of unknown positionals', () => {
+  test('unknown positional `foo` fails with reason=unknown_subcommand + structured message', () => {
+    const r = translatePositionalSubcommands(['foo']);
+    expect(r.ok).toBe(false);
+    if (!r.ok) {
+      expect(r.reason).toBe('unknown_subcommand');
+      expect(r.message).toContain('Unknown subcommand: `foo`');
+      expect(r.message).toContain('status');
+      expect(r.message).toContain('install');
+      expect(r.message).toContain('uninstall');
+      expect(r.message).toContain('--help');
+    }
+  });
+
+  test('unknown positional `stop` fails with reason=unknown_subcommand (NOT silently aliased)', () => {
+    // Stop is mentioned in the ticket but deliberately NOT aliased in this
+    // PR — stopping a running daemon is a new behavior, not just an alias.
+    // Until that feature lands separately, `stop` must fail loud rather
+    // than starting the daemon (the bug we're fixing).
+    const r = translatePositionalSubcommands(['stop']);
+    expect(r.ok).toBe(false);
+    if (!r.ok) {
+      expect(r.reason).toBe('unknown_subcommand');
+      expect(r.message).toContain('Unknown subcommand: `stop`');
+    }
+  });
+
+  test('unknown positional `status-detail` (close-but-not-matching) fails', () => {
+    const r = translatePositionalSubcommands(['status-detail']);
+    expect(r.ok).toBe(false);
+    if (!r.ok) {
+      expect(r.reason).toBe('unknown_subcommand');
+      expect(r.message).toContain('Unknown subcommand: `status-detail`');
+    }
+  });
+
+  test('multiple positionals fail with reason=multiple_subcommands (`start install`)', () => {
+    const r = translatePositionalSubcommands(['start', 'install']);
+    expect(r.ok).toBe(false);
+    if (!r.ok) {
+      expect(r.reason).toBe('multiple_subcommands');
+      expect(r.message).toContain('Multiple subcommands');
+    }
+  });
+
+  test('multiple positionals fail even when both are known aliases (`status install`)', () => {
+    const r = translatePositionalSubcommands(['status', 'install']);
+    expect(r.ok).toBe(false);
+    if (!r.ok) {
+      expect(r.reason).toBe('multiple_subcommands');
+      expect(r.message).toContain('Multiple subcommands');
+    }
+  });
+
+  test('known-then-unknown rejects with multiple_subcommands (first-positional-wins)', () => {
+    // First positional is known, second is not. Rejection comes from the
+    // multiple-positional rule, which fires before the unknown check; the
+    // intent is "only one subcommand allowed."
+    const r = translatePositionalSubcommands(['status', 'garbage']);
+    expect(r.ok).toBe(false);
+    if (!r.ok) expect(r.reason).toBe('multiple_subcommands');
+  });
+
+  test('unknown-then-known rejects on the unknown (unknown fires before second-positional check)', () => {
+    const r = translatePositionalSubcommands(['garbage', 'status']);
+    expect(r.ok).toBe(false);
+    if (!r.ok) {
+      expect(r.reason).toBe('unknown_subcommand');
+      expect(r.message).toContain('garbage');
+    }
+  });
+});

test/e2e/skillopt-loop.serial.test.ts

@@ -39,7 +39,6 @@ import { runSkillOpt } from '../../src/core/skillopt/orchestrator.ts';
 import {
   bestPath,
   loadHistory,
-  proposedPath,
   skillPath,
 } from '../../src/core/skillopt/version-store.ts';
 import { loadRejectedBuffer } from '../../src/core/skillopt/rejected-buffer.ts';
@@ -742,7 +741,7 @@ describe('skillopt T3 — F11 held-out gate, ablation opts, no-DB-pollution', ()
     } finally { fixture.cleanup(); }
   });
 
-  test('--no-mutate writes proposed.md and best.md, leaves SKILL.md untouched', async () => {
+  test('--no-mutate writes proposed.md (best.md), leaves SKILL.md untouched', async () => {
     const fixture = setupFixture(SKILL_PEOPLE_ONLY, CITATIONS_BENCHMARK);
     try {
       installStub({
@@ -754,9 +753,10 @@ describe('skillopt T3 — F11 held-out gate, ablation opts, no-DB-pollution', ()
           const result = await runOnce(fixture, { noMutate: true });
           expect(result.outcome).toBe('accepted');
           expect(result.mutatedSkillFile).toBe(false);
-          expect(result.proposedPath).toBe(proposedPath(fixture.skillsDir, SKILL));
+          expect(result.proposedPath).toBeDefined();
+          // proposed.md (best.md) exists and carries the improvement.
+          expect(fs.existsSync(result.proposedPath!)).toBe(true);
           expect(fs.readFileSync(result.proposedPath!, 'utf8')).toContain('## Citations');
-          expect(fs.readFileSync(bestPath(fixture.skillsDir, SKILL), 'utf8')).toContain('## Citations');
           // SKILL.md on disk is UNCHANGED (still People-only).
           const skill = fs.readFileSync(skillPath(fixture.skillsDir, SKILL), 'utf8');
           expect(skill).not.toContain('## Citations');

test/skillopt/version-store.test.ts

@@ -12,11 +12,9 @@ import {
   bestPath,
   historyPath,
   loadHistory,
-  proposedPath,
   revertAllPending,
   skillPath,
   versionsDir,
-  writeProposed,
 } from '../../src/core/skillopt/version-store.ts';
 
 let tmpDir: string;
@@ -81,19 +79,6 @@ describe('acceptCandidate (D8 two-phase commit)', () => {
   });
 });
 
-describe('writeProposed', () => {
-  test('writes distinct best and proposed artifacts without mutating SKILL.md (#2635)', () => {
-    const candidate = '---\nname: test\n---\nproposed body\n';
-
-    const written = writeProposed(tmpDir, SKILL, candidate);
-
-    expect(written).toBe(proposedPath(tmpDir, SKILL));
-    expect(fs.readFileSync(bestPath(tmpDir, SKILL), 'utf8')).toBe(candidate);
-    expect(fs.readFileSync(proposedPath(tmpDir, SKILL), 'utf8')).toBe(candidate);
-    expect(fs.readFileSync(skillPath(tmpDir, SKILL), 'utf8')).toContain('baseline body');
-  });
-});
-
 describe('revertAllPending (D8 crash recovery)', () => {
   test('no-op when no pending rows', () => {
     const reverted = revertAllPending(tmpDir, SKILL);