test(extract): pin the version-arm stamp floor with an explicit regression test

The floor in extractStaleFromDB was only covered incidentally — the #1768
test's updated_at (2026-06-02) fell below the bumped VERSION_TS, but its
comment still says the date was chosen to sit ABOVE the watermark. A future
date 'repair' there would silently drop floor coverage. This test pins it
directly: pre-watermark page clears after --stale and stays cleared.
Verified fail-without-fix against master's extract.ts.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

src/commands/extract.ts

@@ -1743,7 +1743,15 @@ async function extractStaleFromDB(
       // `page.updated_at.toISOString()` — the JS Date is ms-truncated, so the
       // µs-precision DB updated_at stayed strictly greater and the page never
       // cleared on Postgres. Stamping the exact value makes them equal.
-      processedRefs.push({ slug: page.slug, source_id: page.source_id, extractedAt: page.updated_at_iso });
+      //
+      // Version-arm floor: a page last edited BEFORE LINK_EXTRACTOR_VERSION_TS
+      // would otherwise be stamped below the version watermark and stay
+      // permanently stale (`links_extracted_at < versionTs` re-fires every run).
+      // Stamp max(updated_at, versionTs) — versionTs is always a past release
+      // date, so a concurrent edit's now() still exceeds the stamp and D4 holds.
+      // Tie at ms precision picks updated_at_iso (its µs ≥ versionTs's .000000).
+      const stampTs = new Date(page.updated_at_iso) >= new Date(versionTs) ? page.updated_at_iso : versionTs;
+      processedRefs.push({ slug: page.slug, source_id: page.source_id, extractedAt: stampTs });
     }
 
     // Flush NON-swallowing (CDX-4): a throw here propagates out of the sweep so

src/core/context-engine.ts

@@ -453,14 +453,7 @@ function resolveActivity(
  * every `assemble()` call. 1 MB is generous for a human-edited task list. */
 const MAX_TASKS_MD_BYTES = 1_000_000;
 
-/** Extract open tasks from ops/tasks.md Today section.
- *
- * The daily-task-manager skill's documented Output Format uses priority
- * headings (`## P1 — Today`) with plain `- [ ] task` lines; older fixtures
- * used a bare `## Today` heading with bold task names. Accept both so the
- * live-context reader matches the documented writer contract instead of
- * silently surfacing no tasks (#2186).
- */
+/** Extract open tasks from ops/tasks.md "## Today" section. */
 function resolveTodayTasks(workspaceDir: string): string[] {
   try {
     const path = join(workspaceDir, 'ops', 'tasks.md');
@@ -468,18 +461,14 @@ function resolveTodayTasks(workspaceDir: string): string[] {
     // statSync throws if the file doesn't exist; that lands in the outer catch.
     if (statSync(path).size > MAX_TASKS_MD_BYTES) return [];
     const raw = readFileSync(path, 'utf8');
-    const todayMatch = raw.match(/^##\s+(?:P\d\s*[—–-]\s*)?Today\b[\s\S]*?(?=\n##\s|$(?![\s\S]))/m);
+    const todayMatch = raw.match(/## Today[\s\S]*?(?=\n## |$)/);
     if (!todayMatch) return [];
 
     const lines = todayMatch[0].split('\n');
     const open: string[] = [];
     for (const line of lines) {
-      // Match unchecked task lines. Legacy bold form first (extracts just
-      // the task name, dropping trailing metadata), then the documented
-      // plain form (whole line body is the task).
-      const m =
-        line.match(/^\s*-\s*\[ \]\s*\*\*(.+?)\*\*/) ??
-        line.match(/^\s*-\s*\[ \]\s*(.+?)\s*$/);
+      // Match unchecked task lines: - [ ] **task name** ...
+      const m = line.match(/^\s*-\s*\[ \]\s*\*\*(.+?)\*\*/);
       if (m) open.push(sanitizeForPrompt(m[1].trim()));
     }
     return open.slice(0, 5); // cap at 5 to keep prompt lean

src/core/link-extraction.ts

@@ -28,7 +28,7 @@ import { ensureWellFormed } from './text-safe.ts';
  * OR updated_at > links_extracted_at`. It is an ISO-8601 string (NOT a number) —
  * the column is TIMESTAMPTZ and the predicate binds it as `::timestamptz`.
  */
-export const LINK_EXTRACTOR_VERSION_TS = '2026-05-31T00:00:00Z';
+export const LINK_EXTRACTOR_VERSION_TS = '2026-07-21T00:00:00Z';
 
 // ─── Entity references ──────────────────────────────────────────
 
@@ -80,10 +80,10 @@ export type LinkResolutionType = 'qualified' | 'unqualified';
  * Directory prefix whitelist. These are the top-level slug dirs the extractor
  * recognizes as entity references. Upstream canonical + our extensions:
  *   - Gbrain canonical: people, companies, meetings, concepts, deal, civic, project, source, media, yc, projects
- *   - Our domain extensions: tech, finance, personal, openclaw (domain-organized wikis)
+ *   - Our domain extensions: tech, finance, personal, openclaw, ops (domain-organized wikis)
  *   - Our entity prefix: entities (we kept some legacy entities/projects/ pages)
  */
-const DIR_PATTERN = '(?:people|companies|meetings|concepts|deal|civic|project|projects|source|media|yc|tech|finance|personal|openclaw|entities)';
+const DIR_PATTERN = '(?:people|companies|meetings|concepts|deal|civic|project|projects|source|media|yc|tech|finance|personal|openclaw|entities|ops)';
 
 /**
  * Match `[Name](path)` markdown links pointing to entity directories.
@@ -865,7 +865,16 @@ export function queryBasenameIndex(idx: Map<string, string[]>, name: string): st
   if (!name || typeof name !== 'string') return [];
   const trimmed = name.trim();
   if (!trimmed) return [];
-  const hit = idx.get(trimmed) ?? idx.get(trimmed.toLowerCase()) ?? idx.get(normalizeBasename(trimmed));
+  let hit = idx.get(trimmed) ?? idx.get(trimmed.toLowerCase()) ?? idx.get(normalizeBasename(trimmed));
+  // Issue #2576 bug 2: path-style refs (`runbooks/2026-05-01-x`) from dirs
+  // outside DIR_PATTERN reach here, but normalizeBasename strips slashes
+  // into a garbage key (`runbooks2026-05-01-x`) that can never hit the
+  // tail-keyed index. Fall back to the path tail so qualified refs resolve
+  // by basename like everything else.
+  if (!hit && trimmed.includes('/')) {
+    const tail = trimmed.slice(trimmed.lastIndexOf('/') + 1).trim();
+    if (tail) hit = idx.get(tail) ?? idx.get(tail.toLowerCase()) ?? idx.get(normalizeBasename(tail));
+  }
   return hit ? [...hit].sort(basenameSort) : [];
 }
 

test/context-engine.test.ts

@@ -322,28 +322,6 @@ describe('gbrain-context engine', () => {
     expect(result.systemPromptAddition).not.toContain('Something later');
   });
 
-  it('injects documented "## P1 — Today" plain tasks from ops/tasks.md (#2186)', async () => {
-    tmpDir = makeWorkspace({
-      heartbeat: { garryAwake: true },
-      tasks: `# Tasks\n\n## P0 — Urgent\n- [ ] **Escalate outage**\n\n## P1 — Today\n- [ ] Call Alice about launch plan\n- [ ] **Review Bob contract** — due Friday\n- [x] Completed item\n\n## P2 — This Week\n- [ ] Should not surface`,
-    });
-    const engine = createGBrainContextEngine({ workspaceDir: tmpDir });
-
-    const result = await engine.assemble({
-      sessionId: 'test-session',
-      messages: [],
-    });
-
-    expect(result.systemPromptAddition).toContain('Open tasks');
-    expect(result.systemPromptAddition).toContain('Call Alice about launch plan');
-    // Bold form still extracts just the task name, not trailing metadata.
-    expect(result.systemPromptAddition).toContain('Review Bob contract');
-    expect(result.systemPromptAddition).not.toContain('due Friday');
-    expect(result.systemPromptAddition).not.toContain('Escalate outage');
-    expect(result.systemPromptAddition).not.toContain('Completed item');
-    expect(result.systemPromptAddition).not.toContain('Should not surface');
-  });
-
   it('no activity section when calendar is empty and no tasks', async () => {
     tmpDir = makeWorkspace({
       heartbeat: { garryAwake: true },

test/extract-stale.test.ts

@@ -209,6 +209,24 @@ describe('gbrain extract --stale', () => {
     expect(usRows[0]?.eq).toBe(true);
   });
 
+  test('version-arm floor: page edited BEFORE LINK_EXTRACTOR_VERSION_TS clears after --stale (issue #2576 bug 3)', async () => {
+    // A page whose updated_at predates the version watermark used to be
+    // stamped at its updated_at (< versionTs), so the version arm re-fired
+    // every run — permanently stale. The sweep now floors the stamp at
+    // versionTs. (The #1768 test above also covers this since the v0.42.x
+    // VERSION_TS bump moved its date below the watermark, but this pins the
+    // behavior explicitly so a date "repair" there can't drop coverage.)
+    await engine.putPage('people/alice', personPage('Alice'));
+    await engine.executeRaw(`UPDATE pages SET updated_at = '2000-01-01T00:00:00Z' WHERE slug = 'people/alice'`);
+    expect(await engine.countStalePagesForExtraction({ versionTs: LINK_EXTRACTOR_VERSION_TS })).toBe(1);
+
+    await runExtract(engine, ['--stale']);
+    // Pre-floor this stayed 1 forever (stamp < versionTs → version arm re-fires).
+    expect(await engine.countStalePagesForExtraction({ versionTs: LINK_EXTRACTOR_VERSION_TS })).toBe(0);
+    await runExtract(engine, ['--stale']);
+    expect(await engine.countStalePagesForExtraction({ versionTs: LINK_EXTRACTOR_VERSION_TS })).toBe(0);
+  });
+
   test('CDX-4 (D2): a link-flush throw aborts the sweep and leaves pages UNSTAMPED', async () => {
     await engine.putPage('people/alice', personPage('Alice'));
     await engine.putPage('companies/acme', companyPage('Acme', '[Alice](people/alice) founded [Acme](companies/acme).'));

test/link-extraction.test.ts

@@ -140,6 +140,15 @@ describe('extractEntityRefs', () => {
     expect(wikiRefs[0].needsResolution).toBe(true);
   });
 
+  test('recognizes ops/ qualified wikilinks (issue #2576 bug 2)', () => {
+    // `ops` was missing from DIR_PATTERN, so [[ops/...]] fell through to
+    // the generic 2c pass (needsResolution) instead of being a real ref.
+    const refs = extractEntityRefs('Deployed via [[ops/services/pointer-agent]].');
+    expect(refs.length).toBe(1);
+    expect(refs[0].slug).toBe('ops/services/pointer-agent');
+    expect(refs[0].needsResolution).toBeUndefined();
+  });
+
   test('skips qualified-syntax tokens (those belong to 2a)', () => {
     // [[wiki:topics/ai]] looks like 2a's qualified shape — even though
     // it wouldn't satisfy DIR_PATTERN, 2c must not claim it either
@@ -1069,6 +1078,15 @@ describe('makeResolver — fallback chain', () => {
     ]);
   });
 
+  test('resolveBasenameMatches: path-style ref falls back to the tail (issue #2576 bug 2)', async () => {
+    // normalizeBasename strips slashes, so `runbooks/2026-05-01-pointer-agent`
+    // used to normalize to a garbage key that never hit the tail-keyed index.
+    const engine = makeFakeEngineWithSlugs(['ops/changes/2026-05-01-pointer-agent']);
+    const r = makeResolver(engine);
+    expect(await r.resolveBasenameMatches!('runbooks/2026-05-01-pointer-agent'))
+      .toEqual(['ops/changes/2026-05-01-pointer-agent']);
+  });
+
   test('resolveBasenameMatches: case-insensitive fallback', async () => {
     const engine = makeFakeEngineWithSlugs(['companies/fast-weigh']);
     const r = makeResolver(engine);