fix(onboard): stop dropping onboard-check remediations on the --apply --auto path

Takeover of #2161. runRemediation ignored onboard-check extras in three
places: the pre-flight plan, the initial recommendation build, and the D7
mid-run recheck that rebuilds recs after every completed step. The --check
path threaded extras correctly, so `gbrain onboard --apply --auto` reported
"Nothing to do" when the only remediable work came from onboard checks —
and even with the first two sites fixed (the original PR diff), any plan
with 2+ steps dropped all remaining extras after step 1 via the recheck.

- Add RemediationOpts.extraRemediations; thread it through the pre-flight
  plan, initial recs, and the mid-run recheck.
- Recheck filters extras to ids not already processed this run: extras
  carry static status:'remediable', so unfiltered threading would resubmit
  completed extras forever.
- Wire the CLI --auto path (onboard.ts) AND the MCP run_onboard auto path
  (operations.ts), which already computed the scope-filtered allowedExtras
  and then dropped it.
- Regression test: extras-only plan on an empty brain runs BOTH extras
  exactly once and terminates (serial file: mock.module queue stub +
  GBRAIN_HOME tmpdir).

Co-authored-by: brettdavies <brettdavies@users.noreply.github.com>
Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

src/commands/onboard.ts

@@ -142,12 +142,16 @@ export async function runOnboard(engine: BrainEngine, args: string[]): Promise<v
 
   // --auto path: runs through the T2 library orchestrator. Hooks emit CLI
   // progress to stderr; the final result lands as JSON on stdout (or human
-  // summary).
+  // summary). extraRemediations (gathered above from runAllOnboardChecks)
+  // is threaded into the runner so the onboard-check remediations
+  // (extract-ner, extract-timeline-from-meetings, etc.) reach the planner
+  // — the same wiring the --check path uses above.
   const result = await runRemediation(
     engine,
     {
       targetScore,
       maxUsd,
+      extraRemediations,
       // --auto --yes opts into the prompt_required tier too; library
       // doesn't distinguish auto_apply vs prompt_required, it just runs
       // every remediation in the plan. The plan-building side (T12 render)

src/core/ai/anthropic-key.ts

@@ -18,22 +18,12 @@
 import { loadConfig } from '../config.ts';
 
 export function hasAnthropicKey(): boolean {
-  return resolveAnthropicKey() !== undefined;
-}
-
-/**
- * Resolve the actual key value: env first, then the gbrain config file.
- * Callers constructing an Anthropic client directly (e.g. the legacy
- * subagent path) must pass this as `apiKey` — a bare `new Anthropic()`
- * only sees env, so launchd/MCP workers with config-stored keys fail.
- */
-export function resolveAnthropicKey(): string | undefined {
-  if (process.env.ANTHROPIC_API_KEY) return process.env.ANTHROPIC_API_KEY;
+  if (process.env.ANTHROPIC_API_KEY) return true;
   try {
     const cfg = loadConfig();
-    if (cfg?.anthropic_api_key) return cfg.anthropic_api_key;
+    if (cfg?.anthropic_api_key) return true;
   } catch {
     // loadConfig may throw on first-run installs; treat as no key available.
   }
-  return undefined;
+  return false;
 }

src/core/minions/handlers/subagent.ts

@@ -48,7 +48,6 @@ import {
   logSubagentHeartbeat,
 } from './subagent-audit.ts';
 import { resolveModel, isAnthropicProvider, TIER_DEFAULTS } from '../../model-config.ts';
-import { resolveAnthropicKey } from '../../ai/anthropic-key.ts';
 import { buildSystemPrompt, DEFAULT_SUBAGENT_SYSTEM } from '../system-prompt.ts';
 import { toolLoop as gatewayToolLoop } from '../../ai/gateway.ts';
 import type { ChatToolDef, ChatMessage, ChatBlock, ChatResult, ToolHandler } from '../../ai/gateway.ts';
@@ -187,10 +186,7 @@ export function makeSubagentHandler(deps: SubagentDeps) {
   // lives at sdk.messages.create. Assigning sdk.messages directly gets the
   // right object; JS method-call semantics preserve `this` at the call
   // site (subagent.ts invokes client.create(...) with client === sdk.messages).
-  // Resolve the key env-first, then config (anthropic_api_key) — a bare
-  // new Anthropic() only reads env, so launchd/MCP workers whose key lives
-  // in the gbrain config file would fail auth (#2048).
-  const makeAnthropic = deps.makeAnthropic ?? (() => new Anthropic({ apiKey: resolveAnthropicKey() }));
+  const makeAnthropic = deps.makeAnthropic ?? (() => new Anthropic());
   const client: MessagesClient = deps.client ?? makeAnthropic().messages;
   const config = deps.config ?? loadConfig() ?? ({ engine: 'postgres' } as GBrainConfig);
   const rateLeaseKey = deps.rateLeaseKey ?? DEFAULT_RATE_KEY;

src/core/operations.ts

@@ -4562,8 +4562,7 @@ const list_schema_packs: Operation = {
     const { existsSync, readdirSync } = await import('node:fs');
     const { join } = await import('node:path');
     const { gbrainPath } = await import('./config.ts');
-    const { BUNDLED_PACK_NAMES } = await import('./schema-pack/bundled.ts');
-    const bundled = [...BUNDLED_PACK_NAMES];
+    const bundled = ['gbrain-base', 'gbrain-recommended'];
     const installedDir = gbrainPath('schema-packs');
     const installed: string[] = [];
     if (existsSync(installedDir)) {
@@ -4958,7 +4957,7 @@ const run_onboard: Operation = {
     // typo, the underlying queue.add would reject. Defense-in-depth.
     const result = await runRemediation(
       ctx.engine,
-      { targetScore, maxUsd },
+      { targetScore, maxUsd, extraRemediations: allowedExtras },
       {},
     );
 

src/core/remediation/run.ts

@@ -66,9 +66,10 @@ export async function runRemediation(
   } = await import('../remediation-checkpoint.ts');
 
   const ctx = await loadRecommendationContext(engine);
+  const extraRemediations = opts.extraRemediations ?? [];
 
   // Pre-flight ceiling check via the shared plan computation.
-  const initialPlan = await computeRemediationPlan(engine, { targetScore });
+  const initialPlan = await computeRemediationPlan(engine, { targetScore, extraRemediations });
   if (initialPlan.target_unreachable) {
     hooks.onTargetUnreachable?.(targetScore, initialPlan.max_reachable_score);
     return {
@@ -87,7 +88,7 @@ export async function runRemediation(
   }
 
   const initialHealth = await engine.getHealth();
-  let recs: RemediationStep[] = computeRecommendations(initialHealth, ctx)
+  let recs: RemediationStep[] = computeRecommendations(initialHealth, ctx, extraRemediations)
     .filter((r) => r.status === 'remediable');
   if (recs.length === 0) {
     hooks.onNothingToDo?.(initialHealth.brain_score, targetScore);
@@ -305,7 +306,13 @@ export async function runRemediation(
       // steps with bumped retry suffix (D1).
       if (recs.length === 0 || stepCount >= maxJobs) break;
       const freshHealth = await engine.getHealth();
-      recs = computeRecommendations(freshHealth, ctx).filter((r) => r.status === 'remediable');
+      // Extras carry a static status:'remediable' — a fresh health snapshot
+      // never ages them out the way health-derived steps drop. Filter out
+      // ids this run already processed (any terminal status), or the recheck
+      // would resubmit completed extras every iteration, forever.
+      const processedIds = new Set(submitted.map((s) => s.id));
+      const pendingExtras = extraRemediations.filter((r) => !processedIds.has(r.id));
+      recs = computeRecommendations(freshHealth, ctx, pendingExtras).filter((r) => r.status === 'remediable');
     }
   };
 

src/core/remediation/types.ts

@@ -63,6 +63,16 @@ export interface RemediationOpts {
   resumePlanHash?: string;
   /** Whether to attempt resume at all (default false). */
   resume?: boolean;
+  /**
+   * Caller-supplied RemediationStep entries threaded into the planner.
+   * Mirrors RemediationPlanOpts.extraRemediations so onboard's --apply
+   * --auto path (and MCP run_onboard auto modes) forward the same
+   * onboard-check remediations the --check path already passes through
+   * computeRemediationPlan. Without this the runner saw only generic
+   * brain_score remediations and reported "Nothing to do" whenever the
+   * only applicable work was an extra (e.g. extract-ner).
+   */
+  extraRemediations?: RemediationStep[];
 }
 
 /**

src/core/schema-pack/bundled.ts

@@ -1,24 +0,0 @@
-// Bundled schema-pack registry — single source of truth for the packs that
-// ship in src/core/schema-pack/base/. Keep every bundled-pack consumer
-// (CLI/MCP inspection, active-pack loading, mutation guards, upgrade
-// discovery) on this one list so they cannot drift.
-//
-// v0.39 T8 — gbrain-base + gbrain-recommended.
-// v0.41 T4 — lens packs: creator, investor, engineer, everything (meta-pack).
-// v0.42 type-unification — gbrain-base-v2, the 15-type canonical successor.
-
-export const BUNDLED_PACK_NAMES = [
-  'gbrain-base',
-  'gbrain-recommended',
-  'gbrain-creator',
-  'gbrain-investor',
-  'gbrain-engineer',
-  'gbrain-everything',
-  'gbrain-base-v2',
-] as const;
-
-export type BundledPackName = typeof BUNDLED_PACK_NAMES[number];
-
-export function isBundledPackName(name: string): name is BundledPackName {
-  return (BUNDLED_PACK_NAMES as readonly string[]).includes(name);
-}

src/core/schema-pack/load-active.ts

@@ -37,7 +37,6 @@ import {
   type ResolutionInput,
   type ResolutionResult,
 } from './registry.ts';
-import { isBundledPackName } from './bundled.ts';
 
 /**
  * Inputs the caller (operations.ts handler / engine query path) provides.
@@ -93,7 +92,28 @@ export function _resetPackLocatorForTests(): void {
  * throwing UnknownPackError with a paste-ready install hint.
  */
 function defaultPackLocator(name: string): string | null {
-  if (isBundledPackName(name)) {
+  // v0.39 T8 — bundled packs registry. gbrain-base + gbrain-recommended
+  // ship in src/core/schema-pack/base/. Add a new entry here to bundle
+  // additional canonical packs.
+  //
+  // v0.41 T4 — lens packs join the bundle: creator (atoms + concepts +
+  // extract_atoms/synthesize_concepts phases), investor (theses + bet
+  // resolution + 3 calibration domains), engineer (gstack-learnings bridge
+  // + 3 calibration domains), everything (meta-pack stacking all three
+  // via extends + borrow_from). Each ships as a real YAML at base/<name>.yaml.
+  const BUNDLED: ReadonlyArray<string> = [
+    'gbrain-base',
+    'gbrain-recommended',
+    'gbrain-creator',
+    'gbrain-investor',
+    'gbrain-engineer',
+    'gbrain-everything',
+    // v0.42 type-unification: 15-type canonical successor to gbrain-base.
+    // Ships as install default (Lane E T17) + via gbrain onboard pack
+    // upgrade flow (the unify-types Minion handler).
+    'gbrain-base-v2',
+  ];
+  if (BUNDLED.includes(name)) {
     // Resolve bundled YAML relative to this source file. Works in both
     // direct-bun execution and bun --compile binaries.
     const here = dirname(fileURLToPath(import.meta.url));

src/core/schema-pack/loader.ts

@@ -159,29 +159,6 @@ export function parseYamlMini(content: string): unknown {
     return parseMapping(baseIndent);
   }
 
-  function parseBlockScalar(parentIndent: number, folded: boolean): string {
-    const contentIndent = parentIndent + 2;
-    const out: string[] = [];
-    while (i < lines.length) {
-      const raw = lines[i];
-      // Inside a block scalar everything is literal content — '#' is NOT a
-      // comment here, so use the raw line (no stripComment / isBlank).
-      if (raw.trim() === '') {
-        out.push('');
-        i++;
-        continue;
-      }
-      const indent = indentOf(raw);
-      if (indent <= parentIndent) break;
-      out.push(raw.slice(Math.min(contentIndent, indent)));
-      i++;
-    }
-    if (folded) {
-      return out.join(' ').replace(/\s+$/u, '');
-    }
-    return out.join('\n').replace(/\n+$/u, '');
-  }
-
   function parseSequence(baseIndent: number): unknown[] {
     const result: unknown[] = [];
     while (i < lines.length) {
@@ -250,10 +227,6 @@ export function parseYamlMini(content: string): unknown {
           i++;
           if (rest2 === '') {
             map[key2] = parseBlock(nextIndent + 2);
-          } else if (rest2 === '|' || rest2 === '|-' || rest2 === '|+') {
-            map[key2] = parseBlockScalar(nextIndent, false);
-          } else if (rest2 === '>' || rest2 === '>-' || rest2 === '>+') {
-            map[key2] = parseBlockScalar(nextIndent, true);
           } else {
             map[key2] = parseScalar(rest2);
           }
@@ -284,10 +257,6 @@ export function parseYamlMini(content: string): unknown {
       i++;
       if (rest === '') {
         result[key] = parseBlock(indent + 2);
-      } else if (rest === '|' || rest === '|-' || rest === '|+') {
-        result[key] = parseBlockScalar(indent, false);
-      } else if (rest === '>' || rest === '>-' || rest === '>+') {
-        result[key] = parseBlockScalar(indent, true);
       } else {
         result[key] = parseScalar(rest);
       }

src/core/schema-pack/mutate.ts

@@ -65,7 +65,6 @@ import { invalidateQueryCache } from './query-cache-invalidator.ts';
 import { logMutationFailure, logMutationSuccess, type MutationActor, type MutationOp } from './mutate-audit.ts';
 import { runFilePlaneLintRules } from './lint-rules.ts';
 import { withPackLock, type PackLockOpts } from './pack-lock.ts';
-import { BUNDLED_PACK_NAMES as BUNDLED_PACK_NAME_LIST } from './bundled.ts';
 import type { BrainEngine } from '../engine.ts';
 
 export type PackFileFormat = 'json' | 'yaml';
@@ -94,7 +93,7 @@ export class SchemaPackMutationError extends Error {
   }
 }
 
-export const BUNDLED_PACK_NAMES = new Set<string>(BUNDLED_PACK_NAME_LIST);
+export const BUNDLED_PACK_NAMES = new Set(['gbrain-base', 'gbrain-recommended', 'gbrain-base-v2']);
 
 export interface MutateResult {
   /** Pack name that was mutated. */

test/ai/anthropic-key.test.ts

@@ -10,7 +10,7 @@ import { mkdtempSync, mkdirSync, writeFileSync, rmSync } from 'node:fs';
 import { tmpdir } from 'node:os';
 import { join } from 'node:path';
 import { withEnv } from '../helpers/with-env.ts';
-import { hasAnthropicKey, resolveAnthropicKey } from '../../src/core/ai/anthropic-key.ts';
+import { hasAnthropicKey } from '../../src/core/ai/anthropic-key.ts';
 
 const tmpDirs: string[] = [];
 function freshHome(withConfig?: Record<string, unknown>): string {
@@ -62,35 +62,3 @@ describe('hasAnthropicKey', () => {
     );
   });
 });
-
-describe('resolveAnthropicKey (#2048 — subagent config-key auth)', () => {
-  test('env wins over config', async () => {
-    const home = freshHome({ anthropic_api_key: 'sk-from-config' });
-    await withEnv(
-      { ANTHROPIC_API_KEY: 'sk-from-env', GBRAIN_HOME: home, DATABASE_URL: undefined, GBRAIN_DATABASE_URL: undefined },
-      async () => {
-        expect(resolveAnthropicKey()).toBe('sk-from-env');
-      },
-    );
-  });
-
-  test('config key returned when env unset', async () => {
-    const home = freshHome({ anthropic_api_key: 'sk-from-config' });
-    await withEnv(
-      { ANTHROPIC_API_KEY: undefined, GBRAIN_HOME: home, DATABASE_URL: undefined, GBRAIN_DATABASE_URL: undefined },
-      async () => {
-        expect(resolveAnthropicKey()).toBe('sk-from-config');
-      },
-    );
-  });
-
-  test('neither → undefined', async () => {
-    const home = freshHome();
-    await withEnv(
-      { ANTHROPIC_API_KEY: undefined, GBRAIN_HOME: home, DATABASE_URL: undefined, GBRAIN_DATABASE_URL: undefined },
-      async () => {
-        expect(resolveAnthropicKey()).toBeUndefined();
-      },
-    );
-  });
-});

test/lens-pack-manifests.test.ts

@@ -55,13 +55,13 @@ describe('v0.41 T4: all 4 bundled lens packs parse cleanly', () => {
 });
 
 describe('v0.41 T4: bundled registry includes lens packs', () => {
-  test('BUNDLED_PACK_NAMES includes the 4 lens pack names', async () => {
-    // The bundled list moved from load-active.ts to bundled.ts (the
-    // single source of truth); assert the array directly instead of
-    // grepping source text.
-    const { BUNDLED_PACK_NAMES } = await import('../src/core/schema-pack/bundled.ts');
+  test('load-active.ts BUNDLED array source includes the 4 lens pack names', () => {
+    const loadActiveSrc = readFileSync(
+      join(here, '..', 'src', 'core', 'schema-pack', 'load-active.ts'),
+      'utf-8',
+    );
     for (const name of PACK_NAMES) {
-      expect(BUNDLED_PACK_NAMES).toContain(name);
+      expect(loadActiveSrc).toContain(`'${name}'`);
     }
   });
 });

test/operations-schema-pack.test.ts

@@ -149,9 +149,6 @@ describe('list_schema_packs', () => {
       seedPack('mine');
       const result = await operationsByName.list_schema_packs!.handler(ctxOf(), {}) as { bundled: string[]; installed: string[] };
       expect(result.bundled).toContain('gbrain-base');
-      expect(result.bundled).toContain('gbrain-recommended');
-      expect(result.bundled).toContain('gbrain-base-v2');
-      expect(result.bundled).toContain('gbrain-investor');
       expect(result.installed).toContain('mine');
     });
   });

test/remediation-run-extras.serial.test.ts

@@ -0,0 +1,108 @@
+// test/remediation-run-extras.serial.test.ts
+// Regression for PR #2161 takeover: `gbrain onboard --apply --auto` dropped
+// onboard-check extraRemediations. Two distinct halves of the bug:
+//   1. runRemediation built the pre-flight plan + initial recs WITHOUT the
+//      extras, so an extras-only plan reported "Nothing to do".
+//   2. The D7 mid-run recheck rebuilt recs WITHOUT the extras after every
+//      completed step, so with 2+ plannable steps all remaining extras were
+//      dropped after step 1. The recheck must also filter out extras this
+//      run already processed — extras carry static status:'remediable', so
+//      unfiltered threading would resubmit completed extras forever.
+//
+// SERIAL: mock.module (queue + wait-for-completion stubs, R2) + GBRAIN_HOME
+// env mutation so checkpoint files land in a tmpdir, not ~/.gbrain.
+
+import { describe, expect, test, beforeAll, afterAll, mock } from 'bun:test';
+import { mkdtempSync, rmSync } from 'node:fs';
+import { tmpdir } from 'node:os';
+import { join } from 'node:path';
+import { PGLiteEngine } from '../src/core/pglite-engine.ts';
+import { makeRemediationStep } from '../src/core/remediation-step.ts';
+
+// Stub the Minion queue: every submitted job is immediately 'completed'.
+// runRemediation only calls queue.add + waitForCompletion(queue, id).
+let nextJobId = 1;
+const submittedJobs: Array<{ name: string }> = [];
+mock.module('../src/core/minions/queue.ts', () => ({
+  MinionQueue: class {
+    async add(name: string) {
+      submittedJobs.push({ name });
+      return { id: nextJobId++, status: 'completed' };
+    }
+  },
+}));
+mock.module('../src/core/minions/wait-for-completion.ts', () => ({
+  waitForCompletion: async () => ({ status: 'completed' }),
+}));
+
+let engine: PGLiteEngine;
+let home: string;
+const prevHome = process.env.GBRAIN_HOME;
+
+beforeAll(async () => {
+  home = mkdtempSync(join(tmpdir(), 'gbrain-remextras-'));
+  process.env.GBRAIN_HOME = home;
+  engine = new PGLiteEngine();
+  await engine.connect({});
+  await engine.initSchema();
+}, 120_000);
+
+afterAll(async () => {
+  await engine.disconnect();
+  if (prevHome === undefined) delete process.env.GBRAIN_HOME;
+  else process.env.GBRAIN_HOME = prevHome;
+  rmSync(home, { recursive: true, force: true });
+});
+
+function extra(id: string, job: string) {
+  return makeRemediationStep({
+    id,
+    job,
+    params: {},
+    severity: 'medium',
+    est_seconds: 5,
+    est_usd_cost: 0,
+    rationale: 'synthetic onboard-check extra',
+    status: 'remediable',
+  });
+}
+
+describe('runRemediation extraRemediations threading', () => {
+  test('extras-only plan runs BOTH extras and terminates (no Nothing-to-do, no resubmit loop)', async () => {
+    // Empty PGLite brain → zero health-derived recommendations. Without the
+    // fix, half 1 makes this run return submitted: [] via onNothingToDo.
+    // With only half 1 (the original PR #2161 diff), the mid-run recheck
+    // drops the second extra after step 1 — submitted has 1 entry, not 2.
+    const { runRemediation } = await import('../src/core/remediation/run.ts');
+    let nothingToDo = false;
+    const result = await runRemediation(
+      engine,
+      {
+        targetScore: 1,
+        extraRemediations: [
+          extra('onboard.extract_ner', 'extract-ner'),
+          extra('onboard.extract_timeline', 'extract-timeline-from-meetings'),
+        ],
+        // Safety bound: an unfiltered recheck would resubmit completed
+        // extras forever; maxJobs turns that regression into a fast fail
+        // (extra count > 1 below) instead of a hung test.
+        maxJobs: 5,
+      },
+      { onNothingToDo: () => { nothingToDo = true; } },
+    );
+
+    expect(nothingToDo).toBe(false);
+    const ids = result.submitted.map((s) => s.id);
+    expect(ids).toContain('onboard.extract_ner');
+    expect(ids).toContain('onboard.extract_timeline');
+    // Each extra ran exactly once — the recheck must not re-plan extras the
+    // run already processed.
+    expect(ids.filter((i) => i === 'onboard.extract_ner').length).toBe(1);
+    expect(ids.filter((i) => i === 'onboard.extract_timeline').length).toBe(1);
+    expect(result.submitted.every((s) => s.status === 'completed')).toBe(true);
+    expect(submittedJobs.map((j) => j.name).sort()).toEqual([
+      'extract-ner',
+      'extract-timeline-from-meetings',
+    ]);
+  });
+});

test/schema-cli.test.ts

@@ -64,14 +64,11 @@ describe('gbrain schema CLI (Phase C)', () => {
     expect(r.stdout + r.stderr).toMatch(/schema|active|list|show|validate|use/i);
   });
 
-  test('schema list shows all bundled packs', () => {
+  test('schema list shows gbrain-base bundled', () => {
     const r = gbrain(['schema', 'list']);
     expect(r.code).toBe(0);
     expect(r.stdout).toContain('Bundled packs:');
     expect(r.stdout).toContain('gbrain-base');
-    expect(r.stdout).toContain('gbrain-recommended');
-    expect(r.stdout).toContain('gbrain-base-v2');
-    expect(r.stdout).toContain('gbrain-investor');
   });
 
   test('schema show gbrain-base prints manifest details', () => {
@@ -100,40 +97,6 @@ describe('gbrain schema CLI (Phase C)', () => {
     expect(r.stdout).toContain('valid manifest');
   });
 
-  test('schema show/validate exposes bundled gbrain-recommended', () => {
-    const show = gbrain(['schema', 'show', 'gbrain-recommended']);
-    expect(show.code).toBe(0);
-    expect(show.stdout).toContain('gbrain-recommended v1.0.0');
-    expect(show.stdout).toContain('Page types (');
-    expect(show.stdout).toContain('meeting :: temporal');
-
-    const validate = gbrain(['schema', 'validate', 'gbrain-recommended']);
-    expect(validate.code).toBe(0);
-    expect(validate.stdout).toContain('valid manifest');
-  });
-
-  test('schema show exposes bundled gbrain-base-v2 successor pack', () => {
-    const r = gbrain(['schema', 'show', 'gbrain-base-v2']);
-    expect(r.code).toBe(0);
-    expect(r.stdout).toContain('gbrain-base-v2 v1.0.0');
-    expect(r.stdout).toContain('Page types (');
-    expect(r.stdout).toContain('Link verbs (14)');
-  });
-
-  test('schema active loads configured gbrain-recommended with real types', () => {
-    const home = mkdtempSync(join(tmpdir(), 'gbrain-schema-active-recommended-'));
-    try {
-      mkdirSync(join(home, '.gbrain'), { recursive: true });
-      writeFileSync(join(home, '.gbrain', 'config.json'), JSON.stringify({ schema_pack: 'gbrain-recommended' }), 'utf-8');
-      const r = gbrain(['schema', 'active'], { GBRAIN_HOME: home });
-      expect(r.code).toBe(0);
-      expect(r.stdout).toContain('Active pack: gbrain-recommended');
-      expect(r.stdout).not.toContain('Page types: 0');
-    } finally {
-      rmSync(home, { recursive: true, force: true });
-    }
-  });
-
   test('schema active reports default resolution', () => {
     const r = gbrain(['schema', 'active']);
     expect(r.code).toBe(0);

test/schema-pack-loader.test.ts

@@ -345,34 +345,6 @@ describe('YAML mini-parser', () => {
     expect(result.types[1].weight).toBe(2);
   });
 
-  test('parses block scalar without swallowing following keys', () => {
-    const yaml = `name: blocky
-description: |
-  First line.
-  Second line.
-page_types:
-  - name: meeting
-    primitive: temporal
-    path_prefixes:
-      - meetings/
-    aliases: []
-    extractable: true
-    expert_routing: false`;
-    const result = parseYamlMini(yaml) as { description: string; page_types: Array<Record<string, unknown>> };
-    expect(result.description).toBe('First line.\nSecond line.');
-    expect(result.page_types).toHaveLength(1);
-    expect(result.page_types[0].name).toBe('meeting');
-  });
-
-  test('block scalar keeps # as literal content, not a comment', () => {
-    const yaml = `description: |
-  See issue #2029 for context.
-name: hashy`;
-    const result = parseYamlMini(yaml) as Record<string, unknown>;
-    expect(result.description).toBe('See issue #2029 for context.');
-    expect(result.name).toBe('hashy');
-  });
-
   test('strips comments', () => {
     const result = parseYamlMini('# top comment\nname: value # inline comment') as Record<string, unknown>;
     expect(result.name).toBe('value');
@@ -402,27 +374,6 @@ extends: null`;
     const pack = loadPackFromString(json, 'fixture.json');
     expect(pack.name).toBe('json-pack');
   });
-
-  test('loads block-scalar pack descriptions without losing page types', () => {
-    const pack = loadPackFromString(`api_version: gbrain-schema-pack-v1
-name: recommended-fixture
-version: 1.0.0
-extends: gbrain-base
-description: |
-  Operational starter pack.
-page_types:
-  - name: meeting
-    primitive: temporal
-    path_prefixes:
-      - meetings/
-    aliases: []
-    extractable: true
-    expert_routing: false
-link_types: []`, 'fixture.yaml');
-    expect(pack.name).toBe('recommended-fixture');
-    expect(pack.extends).toBe('gbrain-base');
-    expect(pack.page_types.map((t) => t.name)).toContain('meeting');
-  });
 });
 
 describe('ReDoS guard', () => {

test/schema-pack-mutate.test.ts

@@ -103,10 +103,7 @@ describe('locateMutablePackFile — bundled guard', () => {
     expect(BUNDLED_PACK_NAMES.has('gbrain-recommended')).toBe(true);
     // v0.42 (T22): gbrain-base-v2 joins the bundled set.
     expect(BUNDLED_PACK_NAMES.has('gbrain-base-v2')).toBe(true);
-    // Derived from the single bundled registry — the lens packs (creator,
-    // investor, engineer, everything) are read-only too.
-    expect(BUNDLED_PACK_NAMES.has('gbrain-investor')).toBe(true);
-    expect(BUNDLED_PACK_NAMES.size).toBe(7);
+    expect(BUNDLED_PACK_NAMES.size).toBe(3);
   });
 
   it('rejects gbrain-base-v2 with PACK_READONLY (bundled guard)', () => {