Compare commits

..
Author SHA1 Message Date
Garry TanandClaude Fable 5 921048827a fix(remediation): pass LINK_EXTRACTOR_VERSION_TS to the extraction-lag gate
countExtractionLag omitted versionTs, so its predicate diverged from the
counter it claims to share with doctor's links_extraction_lag check and
the extract --stale walk: pages stamped before an extractor version bump
(links_extracted_at < LINK_EXTRACTOR_VERSION_TS) lagged for doctor and
extract but never tripped the sync.repo/extract.all gate. Pass the stamp;
pin the version-bump arm with a backdated-page test (fails without it).

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
2026-07-22 10:53:55 -07:00
0dff84b16a fix(remediation): gate sync/extract recs on real extraction lag, refresh at D7 recheck
Takeover of #2363. The sync.repo/extract.all recommendations gated on
health.stale_pages — a proxy (updated_at predates newest timeline entry)
that stopped meaning anything after migration v10 dropped the trigger
behind it. Gate them on the honest counter instead:
engine.countStalePagesForExtraction, the same staleness `gbrain extract
--stale` and doctor's links_extraction_lag use.

On top of the original PR, two repairs:

- runRemediation loads RecommendationContext once, but the D7 per-step
  recheck reused the frozen extractionLagPages — a completed sync/extract
  step could never clear the gate, so the pipeline re-fired every recheck
  until maxJobs. The recheck now refreshes the gate alongside getHealth
  via the shared countExtractionLag() helper (extracted into
  remediation/context.ts). Pinned by
  test/remediation-run-d7-refresh.serial.test.ts (serial: mock.module).
- autopilot builds its own RecommendationContext by hand; without wiring,
  it would silently never fire sync.repo/extract.all again. It now
  populates extractionLagPages from the same helper.

Co-authored-by: DarkNightForge <DarkNightForge@users.noreply.github.com>
Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
2026-07-21 15:06:34 -07:00
24 changed files with 257 additions and 410 deletions
+4
View File
@@ -686,6 +686,7 @@ export async function runAutopilot(engine: BrainEngine, args: string[]) {
try {
const { MinionQueue } = await import('../core/minions/queue.ts');
const { computeRecommendations, embeddingProviderConfigured, HOSTED_EMBED_KEY_CONFIG } = await import('../core/brain-score-recommendations.ts');
const { countExtractionLag } = await import('../core/remediation/context.ts');
const queue = new MinionQueue(engine);
const slotMs = Math.floor(Date.now() / (baseInterval * 1000)) * baseInterval * 1000;
const slot = new Date(slotMs).toISOString();
@@ -877,6 +878,9 @@ export async function runAutopilot(engine: BrainEngine, args: string[]) {
return !!(process.env[envVar] || (cfgField ? embedKeyCfg[cfgField] : undefined));
}),
hasChatApiKey: !!(process.env.ANTHROPIC_API_KEY || await engine.getConfig('anthropic_api_key')),
// Real extraction-lag gate for sync.repo/extract.all — same counter
// loadRecommendationContext uses (replaces the health.stale_pages proxy).
extractionLagPages: await countExtractionLag(engine),
};
// v0.41.18.0 (A5 + A19 + A22, T15): consult onboard recommendations
// ALONGSIDE doctor's brain-score recommendations. Onboard's 4 new
-4
View File
@@ -50,10 +50,6 @@ const PER_TASK_KEYS: Array<{ key: string; tier: ModelTier; description: string }
{ key: 'models.eval.contradictions_judge', tier: 'utility', description: 'Contradiction probe judge (v0.34 temporal-aware)' },
{ key: 'models.expansion', tier: 'utility', description: 'Query expansion for hybrid search' },
{ key: 'models.chat', tier: 'reasoning', description: 'Default `gateway.chat()` model' },
{ key: 'models.propose_takes', tier: 'reasoning', description: 'propose_takes claim extractor' },
{ key: 'models.grade_takes', tier: 'reasoning', description: 'grade_takes verdict judge' },
{ key: 'models.calibration_profile', tier: 'reasoning', description: 'Calibration profile generator' },
{ key: 'models.brainstorm', tier: 'reasoning', description: '`gbrain brainstorm` orchestrator' },
];
interface ModelEntry {
+26 -8
View File
@@ -146,6 +146,16 @@ export interface RecommendationContext {
chatModel?: string;
/** Whether the chat provider has a usable API key. */
hasChatApiKey?: boolean;
/**
* Count of pages needing link/timeline extraction — the SAME staleness the
* `gbrain extract --stale` walk and doctor's `links_extraction_lag` check use
* (`engine.countStalePagesForExtraction`). Gates the sync→extract pipeline
* (sync.repo / extract.all). Replaces the old `health.stale_pages` gate, which
* counted "pages whose updated_at predates their newest timeline entry" — a
* proxy that broke when the updated_at-on-timeline-insert trigger was dropped
* (migration v10) and never reflected real extraction work.
*/
extractionLagPages?: number;
}
/** Triage result for one check. */
@@ -192,20 +202,28 @@ export function computeRecommendations(
const source = ctx.sourceId ?? 'default';
// ---------------------------------------------------------------------
// sync.repo — fires when sync hasn't run recently OR pages are stale
// sync.repo + extract.all — the materialization pipeline, gated on the REAL
// extraction lag (pages whose link/timeline edges are stale), NOT on the
// legacy `health.stale_pages` proxy. `extractionLagPages` comes from the same
// counter the `extract --stale` walk + doctor's `links_extraction_lag` use, so
// the recommendation can only fire when running extract will actually reduce
// it (and clear the rec). See RecommendationContext.extractionLagPages.
// sync.repo is the prerequisite: re-sync so pages are current before extract
// materializes their edges.
// ---------------------------------------------------------------------
if (ctx.repoPath && health.stale_pages > 0) {
const extractionLag = ctx.extractionLagPages ?? 0;
if (ctx.repoPath && extractionLag > 0) {
const params = { repoPath: ctx.repoPath, sourceId: ctx.sourceId, noEmbed: true };
out.push({
id: 'sync.repo',
job: 'sync',
params,
idempotency_key: idemKey(source, 'sync', params),
severity: health.stale_pages > 50 ? 'high' : 'medium',
est_seconds: Math.min(600, 30 + health.stale_pages * 0.5),
severity: extractionLag > 50 ? 'high' : 'medium',
est_seconds: Math.min(600, 30 + extractionLag * 0.5),
est_usd_cost: 0, // sync is fs+DB only
depends_on: [],
rationale: `${health.stale_pages} stale page${health.stale_pages === 1 ? '' : 's'} on disk`,
rationale: `Sync before extracting ${extractionLag} page${extractionLag === 1 ? '' : 's'} with stale link/timeline edges`,
status: 'remediable',
});
}
@@ -237,7 +255,7 @@ export function computeRecommendations(
est_seconds: Math.min(3600, 5 + health.missing_embeddings * 0.05),
est_usd_cost,
// sync should run first so embed sees fresh pages.
depends_on: ctx.repoPath && health.stale_pages > 0 ? ['sync.repo'] : [],
depends_on: ctx.repoPath && extractionLag > 0 ? ['sync.repo'] : [],
rationale: `${health.missing_embeddings} chunk${health.missing_embeddings === 1 ? '' : 's'} invisible to vector search`,
status: 'remediable',
});
@@ -267,7 +285,7 @@ export function computeRecommendations(
// Triggered when sync.repo fires (because sync was set to noEmbed:true,
// and noExtract:true after T5 lands → extract job is the materializer).
// ---------------------------------------------------------------------
if (ctx.repoPath && health.stale_pages > 0) {
if (ctx.repoPath && extractionLag > 0) {
const params = { mode: 'all', dir: ctx.repoPath };
out.push({
id: 'extract.all',
@@ -278,7 +296,7 @@ export function computeRecommendations(
est_seconds: Math.min(600, 30 + health.page_count * 0.01),
est_usd_cost: 0,
depends_on: ['sync.repo'],
rationale: 'Materialize link + timeline edges from fresh pages',
rationale: `Materialize link + timeline edges for ${extractionLag} page${extractionLag === 1 ? '' : 's'} with stale extraction`,
status: 'remediable',
});
}
-3
View File
@@ -61,10 +61,7 @@ export const MAX_OUTPUT_TOKENS_CEIL = 32_000;
* (with a readable error) instead of the provider's opaque HTTP 400.
*/
export const ANTHROPIC_OUTPUT_CAPS: Record<string, number> = {
'claude-fable-5': 64_000,
'claude-opus-4-8': 32_000,
'claude-opus-4-7': 32_000,
'claude-sonnet-5': 64_000,
'claude-sonnet-4-6': 64_000,
'claude-haiku-4-5': 64_000,
'claude-haiku-4-5-20251001': 64_000,
+1 -9
View File
@@ -32,7 +32,6 @@
*/
import type { BrainEngine } from '../engine.ts';
import { resolveModel } from '../model-config.ts';
import { chat as defaultChat, embedQuery, type ChatResult, type ChatOpts } from '../ai/gateway.ts';
import { hybridSearch, hybridSearchCached } from '../search/hybrid.ts';
import { fetchFar, type CloseRef, type FarPage } from './domain-bank.ts';
@@ -539,14 +538,7 @@ async function _runBrainstormInner(
const embedFn = opts.embedQueryFn ?? embedQuery;
// ---- Phase 0: cost preview + TTY grace ----
// Tier-resolved (mirrors the cycle phases): honors models.brainstorm >
// models.default > models.tier.reasoning; the fallback keeps stock
// behavior identical (reasoning tier default IS claude-sonnet-4-6).
const modelStr = opts.modelOverride ?? await resolveModel(engine, {
configKey: 'models.brainstorm',
tier: 'reasoning',
fallback: 'anthropic:claude-sonnet-4-6',
});
const modelStr = opts.modelOverride ?? 'anthropic:claude-sonnet-4-6';
const { aborted, estimate } = await previewCostAndWait({
profile,
model: modelStr,
+3 -13
View File
@@ -26,8 +26,8 @@
*/
import { BaseCyclePhase, type ScopedReadOpts, type BasePhaseOpts } from './base-phase.ts';
import { chat as gatewayChat, getChatModel } from '../ai/gateway.ts';
import { resolveModel } from '../model-config.ts';
import { chat as gatewayChat } from '../ai/gateway.ts';
import { TIER_DEFAULTS } from '../model-config.ts';
import { gateVoice, type VoiceGateGenerator, type VoiceGateJudge } from '../calibration/voice-gate.ts';
import { patternStatementTemplate, type PatternStatementSlots } from '../calibration/templates.ts';
// v0.41 T10 — domain widening. The aggregator module resolves the active
@@ -229,16 +229,7 @@ class CalibrationProfilePhase extends BaseCyclePhase {
): Promise<{ summary: string; details: Record<string, unknown>; status?: PhaseStatus }> {
const holder = opts.holder ?? 'garry';
const promptVersion = opts.promptVersion ?? CALIBRATION_PROFILE_PROMPT_VERSION;
// Resolved once (see propose-takes.ts for the chain): models.calibration_profile
// > models.default > env > the gateway's chat model (itself resolved
// through models.chat + the reasoning tier). Provider-prefixed per #2451
// — a bare id would make gateway.chat() throw "missing a provider
// prefix". Drives the generator's chat call, the budget label, and the
// persisted model_id, so the three can never disagree.
const modelId = opts.model ?? await resolveModel(engine, {
configKey: 'models.calibration_profile',
fallback: getChatModel(),
});
const modelId = opts.model ?? TIER_DEFAULTS.reasoning;
const gradeCompletion = opts.gradeCompletion ?? 1.0;
const patternsGenerator = opts.patternsGenerator ?? defaultPatternsGenerator;
const biasTagsGenerator = opts.biasTagsGenerator ?? defaultBiasTagsGenerator;
@@ -274,7 +265,6 @@ class CalibrationProfilePhase extends BaseCyclePhase {
scorecard,
holder,
attempt,
modelHint: modelId,
...(feedback !== undefined ? { feedback } : {}),
});
return lines.join('\n');
+3 -22
View File
@@ -36,9 +36,7 @@
import { createHash } from 'node:crypto';
import { BaseCyclePhase, type ScopedReadOpts, type BasePhaseOpts } from './base-phase.ts';
import { chat as gatewayChat, getChatModel } from '../ai/gateway.ts';
import { resolveModel } from '../model-config.ts';
import { splitProviderModelId } from '../model-id.ts';
import { chat as gatewayChat } from '../ai/gateway.ts';
import { GBrainError } from '../types.ts';
import type { OperationContext } from '../operations.ts';
import type { BrainEngine, Take, TakeResolution } from '../engine.ts';
@@ -397,24 +395,7 @@ class GradeTakesPhase extends BaseCyclePhase {
const autoResolve = opts.autoResolve ?? false; // D17 default OFF
const autoResolveThreshold = opts.autoResolveThreshold ?? 0.95; // D12 conservative
const resolvedByLabel = opts.resolvedByLabel ?? 'gbrain:grade_takes';
// Resolve the judge model ONCE (see propose-takes.ts for the chain —
// same label-vs-actual split fixed here: the judge call rode the
// gateway's chat_model while the grade cache key, evidence signature,
// and budget label recorded a hardcoded 4.6).
// NOTE: changing the resolved judge model invalidates the grade cache
// (judge_model_id is part of its key) — a one-time, budget-capped
// re-grade wave that is CORRECT, since the actual judge did change.
const judgeModelFull = opts.model ?? await resolveModel(engine, {
configKey: 'models.grade_takes',
fallback: getChatModel(),
});
// Bare tail for cache keys / evidence signatures / stored ids — the
// grade cache has always been keyed on bare ids; the gateway default
// resolves provider-prefixed, and normalizing preserves cache continuity
// on stock installs (no spurious re-judge wave from a prefix change). A
// genuinely different configured judge still invalidates, which is
// correct. The FULL string drives the actual judge call.
const judgeModelId = splitProviderModelId(judgeModelFull).model || judgeModelFull;
const judgeModelId = opts.model ?? 'claude-sonnet-4-6';
const useEnsemble = opts.useEnsemble ?? false;
const ensembleThreshold = opts.ensembleThreshold ?? 0.85;
@@ -487,7 +468,7 @@ class GradeTakesPhase extends BaseCyclePhase {
// Call the single-model judge. Errors on a single take log warning + continue.
let verdict: JudgeVerdict;
try {
verdict = await judge({ take, evidence, modelHint: judgeModelFull });
verdict = await judge({ take, evidence, modelHint: opts.model });
} catch (err) {
const msg = err instanceof Error ? err.message : String(err);
result.warnings.push(`judge failed on take ${take.id}: ${msg}`);
+16 -58
View File
@@ -5,16 +5,11 @@
* a tuned LLM extractor, writes the extracted gradeable claims to the
* `take_proposals` queue. User accepts/rejects via `gbrain takes propose`.
*
* Idempotency contract (D17 schema spec; per-claim rows since migration v125):
* Every scan of a (source_id, page_slug, content_hash, prompt_version)
* tuple leaves at least one row — one per extracted claim, or a single
* status='empty' sentinel when extraction yields nothing — so an unchanged
* page never re-spends LLM tokens. Pre-v125 only proposal rows were
* written: a zero-claim page never entered the cache and was re-extracted
* on EVERY cycle (observed live: ~60 such pages × every cycle ≈ 1,400
* wasted extractor calls / ~$15 per day — ~90% of total autopilot spend).
* Bumping PROPOSE_TAKES_PROMPT_VERSION cleanly invalidates the cache so a
* tuned prompt re-runs proposals on every page.
* Idempotency contract (D17 schema spec):
* The unique index on (source_id, page_slug, content_hash, prompt_version)
* means an unchanged page never re-spends LLM tokens. Bumping
* PROPOSE_TAKES_PROMPT_VERSION cleanly invalidates the cache so a tuned
* prompt re-runs proposals on every page.
*
* F2 fence dedup:
* The phase reads the page's existing `<!-- gbrain:takes:begin -->` fence
@@ -45,7 +40,6 @@
import { randomUUID, createHash } from 'node:crypto';
import { BaseCyclePhase, type ScopedReadOpts, type BasePhaseOpts } from './base-phase.ts';
import { chat as gatewayChat, getChatModel } from '../ai/gateway.ts';
import { resolveModel } from '../model-config.ts';
import { writeReceipt } from '../extract/receipt-writer.ts';
import { upsertExtractRollup } from '../extract/rollup-writer.ts';
import { GBrainError } from '../types.ts';
@@ -313,18 +307,6 @@ class ProposeTakesPhase extends BaseCyclePhase {
const promptVersion = opts.promptVersion ?? PROPOSE_TAKES_PROMPT_VERSION;
const pageLimit = opts.pageLimit ?? 100;
const skipPagesWithFence = opts.skipPagesWithFence ?? false;
// Resolve the extractor model ONCE: models.propose_takes >
// models.default > GBRAIN_MODEL env > the gateway's chat model (which
// reconfigureGatewayWithEngine already resolved through models.chat +
// the reasoning tier). One resolved provider-prefixed string drives the
// actual chat call, the budget estimate, AND the stored model_id — so
// the recorded model can never disagree with the model that ran (#2451
// convention: stored ids are provider-prefixed, nested prefixes like
// openrouter:anthropic/... stay intact).
const extractorModelId = opts.model ?? await resolveModel(engine, {
configKey: 'models.propose_takes',
fallback: getChatModel(),
});
const proposalRunId = `propose-${new Date().toISOString().slice(0, 19).replace(/[-:T]/g, '')}-${randomUUID().slice(0, 8)}`;
const result: ProposeTakesResult = {
@@ -348,6 +330,8 @@ class ProposeTakesPhase extends BaseCyclePhase {
opts.reporter.start('propose_takes.pages' as never, pages.length);
}
const modelId = opts.model ?? getChatModel();
for (const page of pages) {
result.pages_scanned += 1;
this.tick(opts);
@@ -377,7 +361,7 @@ class ProposeTakesPhase extends BaseCyclePhase {
// Budget pre-check before the LLM call. Estimate: ~1500 input tokens + 500 output.
const budget = this.checkBudget({
modelId: extractorModelId,
modelId,
estimatedInputTokens: 1500,
maxOutputTokens: 500,
});
@@ -396,7 +380,7 @@ class ProposeTakesPhase extends BaseCyclePhase {
pagePath: page.slug,
pageBody: body,
existingTakes,
modelHint: extractorModelId,
modelHint: opts.model,
});
} catch (err) {
const msg = err instanceof Error ? err.message : String(err);
@@ -404,42 +388,16 @@ class ProposeTakesPhase extends BaseCyclePhase {
continue;
}
// Zero-claim scans MUST still enter the idempotency cache. Pre-v125
// only proposal rows were written, so a page whose extraction yielded
// no gradeable claims never got a row for its (page, content_hash) —
// the cache check above missed on every subsequent cycle and the LLM
// call was re-spent on the same unchanged page, forever. The sentinel
// row (status='empty', empty claim_text) is invisible to the review
// queue (pending_idx is partial on status='pending'); it exists only
// so the cache check hits.
if (proposals.length === 0) {
await engine.executeRaw(
`INSERT INTO take_proposals
(source_id, page_slug, content_hash, prompt_version, proposal_run_id,
status, claim_text, kind, holder, weight, domain, dedup_against_fence_rows, model_id)
VALUES ($1, $2, $3, $4, $5, 'empty', '', 'none', 'brain', 0, NULL, NULL, $6)
ON CONFLICT (source_id, page_slug, content_hash, prompt_version, md5(claim_text)) DO NOTHING`,
[sourceId, page.slug, ch, promptVersion, proposalRunId, extractorModelId],
);
continue;
}
// Write proposals to take_proposals, one row per claim. The v125
// idempotency index includes md5(claim_text), so a same-page
// multi-claim run keeps EVERY claim — the pre-v125 four-column unique
// index made claims 2..N conflict with claim 1 and ON CONFLICT DO
// NOTHING silently dropped them (the review queue only ever saw the
// first claim of each page version). RETURNING id keeps
// proposals_inserted honest: it counts rows that actually landed,
// not insert attempts.
// Write proposals to take_proposals. Each row is a separate INSERT
// because the composite idempotency key is on the per-page tuple — a
// bulk UPSERT would collapse a same-page-multi-claim run into one row.
for (const p of proposals) {
const landed = await engine.executeRaw<{ id: number }>(
await engine.executeRaw(
`INSERT INTO take_proposals
(source_id, page_slug, content_hash, prompt_version, proposal_run_id,
claim_text, kind, holder, weight, domain, dedup_against_fence_rows, model_id)
VALUES ($1, $2, $3, $4, $5, $6, $7, $8, $9, $10, $11, $12)
ON CONFLICT (source_id, page_slug, content_hash, prompt_version, md5(claim_text)) DO NOTHING
RETURNING id`,
ON CONFLICT (source_id, page_slug, content_hash, prompt_version) DO NOTHING`,
[
sourceId,
page.slug,
@@ -452,10 +410,10 @@ class ProposeTakesPhase extends BaseCyclePhase {
p.weight,
p.domain ?? null,
JSON.stringify(existingTakes),
extractorModelId,
modelId,
],
);
if (landed.length > 0) result.proposals_inserted += 1;
result.proposals_inserted += 1;
}
}
-3
View File
@@ -58,11 +58,8 @@ const SUMMARY_SLUG_RE = /^[a-z0-9][a-z0-9\-]*(\/[a-z0-9][a-z0-9\-]*)*$/;
* resolver returns for known Anthropic aliases.
*/
const MODEL_CONTEXT_TOKENS: Record<string, number> = {
'claude-fable-5': 1_000_000,
'claude-opus-4-8': 1_000_000,
'claude-opus-4-7': 1_000_000,
'claude-opus-4-6': 1_000_000,
'claude-sonnet-5': 1_000_000,
'claude-sonnet-4-6': 200_000,
'claude-sonnet-4-5': 200_000,
'claude-haiku-4-5-20251001': 200_000,
-35
View File
@@ -5671,41 +5671,6 @@ export const MIGRATIONS: Migration[] = [
`);
},
},
{
version: 125,
name: 'take_proposals_empty_scan_sentinels_and_per_claim_rows',
// v0.42.x — kill the propose_takes rescan loop + stop dropping claims.
//
// Two defects, one schema touch:
// 1. Zero-claim scans never entered the idempotency cache (only
// proposal rows were written), so pages whose extraction yielded
// nothing were re-extracted on EVERY cycle. Observed live: ~60
// such pages per run ≈ 1,400 wasted extractor calls / ~$15 per
// day — ~90% of total autopilot LLM spend. Fix: the phase now
// writes a status='empty' sentinel row per zero-claim scan; the
// status CHECK gains the 'empty' value. Sentinels are excluded
// from the partial pending index, so the review queue never sees
// them.
// 2. The 4-column unique index collapsed a same-page multi-claim run
// to its FIRST claim: rows 2..N conflicted and ON CONFLICT DO
// NOTHING silently dropped them (verified live: exactly one row
// per (page, hash) across 3 days of runs). Fix: the idempotency
// index gains md5(claim_text) — per-claim rows, while the
// 4-column prefix still serves the per-scan cache lookup.
//
// Existing data is index-safe by construction: the old index guaranteed
// at most one row per 4-tuple, so the widened index has no duplicates
// to trip on. The DROP+ADD CONSTRAINT pair is idempotent as a unit.
idempotent: true,
sql: `
ALTER TABLE take_proposals DROP CONSTRAINT IF EXISTS take_proposals_status_check;
ALTER TABLE take_proposals ADD CONSTRAINT take_proposals_status_check
CHECK (status IN ('pending','accepted','rejected','superseded','empty'));
DROP INDEX IF EXISTS take_proposals_idempotency_idx;
CREATE UNIQUE INDEX IF NOT EXISTS take_proposals_idempotency_idx
ON take_proposals (source_id, page_slug, content_hash, prompt_version, md5(claim_text));
`,
},
];
export const LATEST_VERSION = MIGRATIONS.length > 0
+2 -2
View File
@@ -762,7 +762,7 @@ CREATE TABLE IF NOT EXISTS take_proposals (
proposed_at TIMESTAMPTZ NOT NULL DEFAULT now(),
proposal_run_id TEXT NOT NULL,
status TEXT NOT NULL DEFAULT 'pending'
CHECK (status IN ('pending','accepted','rejected','superseded','empty')),
CHECK (status IN ('pending','accepted','rejected','superseded')),
claim_text TEXT NOT NULL,
kind TEXT NOT NULL,
holder TEXT NOT NULL,
@@ -777,7 +777,7 @@ CREATE TABLE IF NOT EXISTS take_proposals (
predicted_brier_bucket_n INTEGER
);
CREATE UNIQUE INDEX IF NOT EXISTS take_proposals_idempotency_idx
ON take_proposals (source_id, page_slug, content_hash, prompt_version, md5(claim_text));
ON take_proposals (source_id, page_slug, content_hash, prompt_version);
CREATE INDEX IF NOT EXISTS take_proposals_pending_idx
ON take_proposals (source_id, status, proposed_at DESC)
WHERE status = 'pending';
+25
View File
@@ -8,6 +8,7 @@
import type { BrainEngine } from '../engine.ts';
import type { RecommendationContext } from '../brain-score-recommendations.ts';
import { LINK_EXTRACTOR_VERSION_TS } from '../link-extraction.ts';
// Re-export so consumers can `import { RecommendationContext } from '../remediation'`
// — the canonical RecommendationContext type still lives in
@@ -68,5 +69,29 @@ export async function loadRecommendationContext(
embeddingDimensions,
embeddingProviderConfigured: embeddingConfigured,
hasChatApiKey: !!(process.env.ANTHROPIC_API_KEY || fileCfg?.anthropic_api_key),
extractionLagPages: await countExtractionLag(engine),
};
}
/**
* Real extraction-lag count — the SAME staleness `gbrain extract --stale`
* processes (engine.countStalePagesForExtraction with
* versionTs=LINK_EXTRACTOR_VERSION_TS, matching doctor's links_extraction_lag
* check — without versionTs, pages stamped before an extractor version bump
* would lag for doctor/extract but never trip this gate). Drives the
* sync→extract recommendation pipeline; replaces the legacy
* `health.stale_pages` proxy that no longer reflected real extraction work
* after the v10 trigger drop.
*
* Shared by loadRecommendationContext AND the D7 per-step recheck in
* runRemediation — the recheck MUST refresh this gate alongside getHealth,
* or a completed extract step keeps re-firing off the frozen initial count.
*/
export async function countExtractionLag(engine: BrainEngine): Promise<number> {
try {
return await engine.countStalePagesForExtraction({ versionTs: LINK_EXTRACTOR_VERSION_TS });
} catch {
/* counter unavailable (very old brain / mid-migration) — treat as 0 */
return 0;
}
}
+7 -2
View File
@@ -16,7 +16,7 @@ import {
computeRecommendations,
} from '../brain-score-recommendations.ts';
import type { RemediationStep } from '../remediation-step.ts';
import { loadRecommendationContext } from './context.ts';
import { countExtractionLag, loadRecommendationContext } from './context.ts';
import { computeRemediationPlan } from './plan.ts';
import type {
RemediationHooks,
@@ -65,7 +65,7 @@ export async function runRemediation(
clearRemediationCheckpoint,
} = await import('../remediation-checkpoint.ts');
const ctx = await loadRecommendationContext(engine);
let ctx = await loadRecommendationContext(engine);
// Pre-flight ceiling check via the shared plan computation.
const initialPlan = await computeRemediationPlan(engine, { targetScore });
@@ -305,6 +305,11 @@ export async function runRemediation(
// steps with bumped retry suffix (D1).
if (recs.length === 0 || stepCount >= maxJobs) break;
const freshHealth = await engine.getHealth();
// Refresh the extraction-lag gate alongside health: ctx was loaded once
// before the loop, and a completed sync/extract step is exactly what
// drives the count down. Reusing the frozen initial count would re-fire
// sync.repo/extract.all every recheck until maxJobs.
ctx = { ...ctx, extractionLagPages: await countExtractionLag(engine) };
recs = computeRecommendations(freshHealth, ctx).filter((r) => r.status === 'remediable');
}
};
+4 -10
View File
@@ -1274,14 +1274,8 @@ CREATE INDEX IF NOT EXISTS calibration_profiles_published_idx
WHERE published = true;
-- take_proposals: propose_takes phase queue. Idempotency cache via the
-- composite unique index (source_id, page_slug, content_hash, prompt_version,
-- md5(claim_text)) — the 4-column prefix is the per-scan cache key (mirrors
-- v0.23 dream_verdicts); md5(claim_text) makes rows per-claim so multi-claim
-- pages keep every claim (v125). status='empty' rows are zero-claim scan
-- sentinels: they hold the cache slot for a page version whose extraction
-- yielded nothing — the phase never re-spends the LLM call on that page
-- version. Excluded from the partial pending index. proposal_run_id supports
-- --rollback by run.
-- composite unique index (source_id, page_slug, content_hash, prompt_version)
-- mirrors v0.23 dream_verdicts. proposal_run_id supports --rollback by run.
CREATE TABLE IF NOT EXISTS take_proposals (
id BIGSERIAL PRIMARY KEY,
source_id TEXT NOT NULL REFERENCES sources(id) ON DELETE CASCADE,
@@ -1292,7 +1286,7 @@ CREATE TABLE IF NOT EXISTS take_proposals (
proposed_at TIMESTAMPTZ NOT NULL DEFAULT now(),
proposal_run_id TEXT NOT NULL,
status TEXT NOT NULL DEFAULT 'pending'
CHECK (status IN ('pending','accepted','rejected','superseded','empty')),
CHECK (status IN ('pending','accepted','rejected','superseded')),
claim_text TEXT NOT NULL,
kind TEXT NOT NULL,
holder TEXT NOT NULL,
@@ -1307,7 +1301,7 @@ CREATE TABLE IF NOT EXISTS take_proposals (
predicted_brier_bucket_n INTEGER
);
CREATE UNIQUE INDEX IF NOT EXISTS take_proposals_idempotency_idx
ON take_proposals (source_id, page_slug, content_hash, prompt_version, md5(claim_text));
ON take_proposals (source_id, page_slug, content_hash, prompt_version);
CREATE INDEX IF NOT EXISTS take_proposals_pending_idx
ON take_proposals (source_id, status, proposed_at DESC)
WHERE status = 'pending';
+9
View File
@@ -1423,6 +1423,15 @@ export interface BrainStats {
export interface BrainHealth {
page_count: number;
embed_coverage: number;
/**
* LEGACY proxy: count of pages whose `updated_at` predates their newest
* timeline entry. This bumped meaningfully only while a trigger updated
* `pages.updated_at` on timeline insert; that trigger was dropped in
* migration v10, so the metric no longer reflects real "needs work" state.
* NO LONGER gates remediations — the sync→extract pipeline now gates on
* `RecommendationContext.extractionLagPages` (the real extraction-lag from
* `countStalePagesForExtraction`). Retained for the CLI health line + back-compat.
*/
stale_pages: number;
/**
* Islanded pages — zero inbound AND zero outbound links. A hub page
+4 -10
View File
@@ -1270,14 +1270,8 @@ CREATE INDEX IF NOT EXISTS calibration_profiles_published_idx
WHERE published = true;
-- take_proposals: propose_takes phase queue. Idempotency cache via the
-- composite unique index (source_id, page_slug, content_hash, prompt_version,
-- md5(claim_text)) — the 4-column prefix is the per-scan cache key (mirrors
-- v0.23 dream_verdicts); md5(claim_text) makes rows per-claim so multi-claim
-- pages keep every claim (v125). status='empty' rows are zero-claim scan
-- sentinels: they hold the cache slot for a page version whose extraction
-- yielded nothing — the phase never re-spends the LLM call on that page
-- version. Excluded from the partial pending index. proposal_run_id supports
-- --rollback by run.
-- composite unique index (source_id, page_slug, content_hash, prompt_version)
-- mirrors v0.23 dream_verdicts. proposal_run_id supports --rollback by run.
CREATE TABLE IF NOT EXISTS take_proposals (
id BIGSERIAL PRIMARY KEY,
source_id TEXT NOT NULL REFERENCES sources(id) ON DELETE CASCADE,
@@ -1288,7 +1282,7 @@ CREATE TABLE IF NOT EXISTS take_proposals (
proposed_at TIMESTAMPTZ NOT NULL DEFAULT now(),
proposal_run_id TEXT NOT NULL,
status TEXT NOT NULL DEFAULT 'pending'
CHECK (status IN ('pending','accepted','rejected','superseded','empty')),
CHECK (status IN ('pending','accepted','rejected','superseded')),
claim_text TEXT NOT NULL,
kind TEXT NOT NULL,
holder TEXT NOT NULL,
@@ -1303,7 +1297,7 @@ CREATE TABLE IF NOT EXISTS take_proposals (
predicted_brier_bucket_n INTEGER
);
CREATE UNIQUE INDEX IF NOT EXISTS take_proposals_idempotency_idx
ON take_proposals (source_id, page_slug, content_hash, prompt_version, md5(claim_text));
ON take_proposals (source_id, page_slug, content_hash, prompt_version);
CREATE INDEX IF NOT EXISTS take_proposals_pending_idx
ON take_proposals (source_id, status, proposed_at DESC)
WHERE status = 'pending';
+9 -12
View File
@@ -119,13 +119,12 @@ describe('computeRecommendations', () => {
expect(recs.find((r) => r.id === 'embed.stale')).toBeUndefined();
});
test('stale pages + dead links produce sync + backlinks + extract', () => {
test('extraction lag + dead links produce sync + backlinks + extract', () => {
const health = makeHealth({
stale_pages: 25,
dead_links: 8,
brain_score: 70,
});
const recs = computeRecommendations(health, { repoPath: '/brain', embeddingProviderConfigured: true });
const recs = computeRecommendations(health, { repoPath: '/brain', embeddingProviderConfigured: true, extractionLagPages: 25 });
const ids = recs.map((r) => r.id);
expect(ids).toContain('sync.repo');
expect(ids).toContain('backlinks.fix');
@@ -133,18 +132,17 @@ describe('computeRecommendations', () => {
});
test('extract.all depends on sync.repo (D14: stable ids)', () => {
const health = makeHealth({ stale_pages: 10 });
const recs = computeRecommendations(health, { repoPath: '/brain', embeddingProviderConfigured: true });
const health = makeHealth();
const recs = computeRecommendations(health, { repoPath: '/brain', embeddingProviderConfigured: true, extractionLagPages: 10 });
const extract = recs.find((r) => r.id === 'extract.all');
expect(extract?.depends_on).toContain('sync.repo');
});
test('embed.stale depends on sync.repo when sync also needed', () => {
test('embed.stale depends on sync.repo when extraction also needed', () => {
const health = makeHealth({
stale_pages: 10,
missing_embeddings: 100,
});
const recs = computeRecommendations(health, { repoPath: '/brain', embeddingProviderConfigured: true });
const recs = computeRecommendations(health, { repoPath: '/brain', embeddingProviderConfigured: true, extractionLagPages: 10 });
const embed = recs.find((r) => r.id === 'embed.stale');
expect(embed?.depends_on).toContain('sync.repo');
});
@@ -159,9 +157,9 @@ describe('computeRecommendations', () => {
test('severity ordering: critical before high before medium', () => {
const health = makeHealth({
missing_embeddings: 100, // critical
stale_pages: 80, // high
});
const recs = computeRecommendations(health, { repoPath: '/brain', embeddingProviderConfigured: true });
// extractionLagPages > 50 → sync.repo fires at 'high' severity.
const recs = computeRecommendations(health, { repoPath: '/brain', embeddingProviderConfigured: true, extractionLagPages: 80 });
const critIdx = recs.findIndex((r) => r.severity === 'critical');
const highIdx = recs.findIndex((r) => r.severity === 'high');
expect(critIdx).toBeLessThan(highIdx);
@@ -170,11 +168,10 @@ describe('computeRecommendations', () => {
// D6 #5 — THE critical regression test for the agent contract.
test('D6 #5: determinism — same input twice produces identical output', () => {
const health = makeHealth({
stale_pages: 10,
missing_embeddings: 50,
dead_links: 3,
});
const ctx = { repoPath: '/brain', embeddingProviderConfigured: true, sourceId: 'default' };
const ctx = { repoPath: '/brain', embeddingProviderConfigured: true, sourceId: 'default', extractionLagPages: 10 };
const run1 = computeRecommendations(health, ctx);
const run2 = computeRecommendations(health, ctx);
expect(JSON.stringify(run1)).toBe(JSON.stringify(run2));
-1
View File
@@ -38,7 +38,6 @@ function buildMockEngine(opts: { scorecard: TakesScorecard }): {
} {
const captured: CapturedSql[] = [];
const engine = {
async getConfig() { return null; },
kind: 'pglite',
async getScorecard() {
return opts.scorecard;
-1
View File
@@ -47,7 +47,6 @@ function buildMockEngine(opts: { takes: Take[] }): {
const captured: CapturedSql[] = [];
const resolves: CapturedResolve[] = [];
const engine = {
async getConfig() { return null; },
kind: 'pglite',
async listTakes() {
return opts.takes;
-24
View File
@@ -46,14 +46,12 @@ interface CapturedResolve {
function buildMockEngine(opts: {
takes: Take[];
cachedGrades?: Set<string>; // composite-key strings already in take_grade_cache
config?: Record<string, string>; // engine.getConfig plane (models.grade_takes etc.)
}): { engine: BrainEngine; captured: CapturedSql[]; resolves: CapturedResolve[] } {
const captured: CapturedSql[] = [];
const resolves: CapturedResolve[] = [];
const cached = opts.cachedGrades ?? new Set<string>();
const engine = {
async getConfig(key: string) { return opts.config?.[key] ?? null; },
kind: 'pglite',
async listTakes() {
return opts.takes;
@@ -226,28 +224,6 @@ describe('runPhaseGradeTakes — phase integration', () => {
expect(resolves).toHaveLength(0); // no canonical mutation
});
test('models.grade_takes config drives the judge call; cache key stays bare-tailed', async () => {
// Pre-fix the judge call rode the gateway's chat_model while the cache
// key / budget label recorded a hardcoded 'claude-sonnet-4-6'. The phase
// now resolves models.grade_takes; the judge gets the FULL string and
// the cache row keys on the bare tail (continuity with historical rows).
const takes = [buildTake({ id: 1, sinceDate: '2023-01-01' })];
const { engine, captured } = buildMockEngine({
takes,
config: { 'models.grade_takes': 'anthropic:claude-sonnet-5' },
});
const hints: Array<string | undefined> = [];
const judge: JudgeFn = async ({ modelHint }) => {
hints.push(modelHint);
return { verdict: 'correct', confidence: 0.9, reasoning: 'held' };
};
const result = await runPhaseGradeTakes(buildCtx(engine), { judge });
expect(result.status).toBe('ok');
expect(hints).toEqual(['anthropic:claude-sonnet-5']); // actual call gets the FULL string
const inserts = captured.filter(c => c.sql.includes('INSERT INTO take_grade_cache'));
expect(inserts[0]!.params[2]).toBe('claude-sonnet-5'); // judge_model_id is the bare tail
});
test('D17: auto-resolve OFF by default — even high-confidence verdict does NOT mutate takes', async () => {
const takes = [buildTake({ id: 1, sinceDate: '2023-01-01' })];
const { engine, resolves } = buildMockEngine({ takes });
-160
View File
@@ -1,160 +0,0 @@
/**
* propose_takes rescan-loop + dropped-claims regression tests (migration v125).
*
* Two live-observed defects, both fixed by the v125 schema + phase change:
*
* 1. RESCAN LOOP — a page whose extraction yielded zero claims never
* entered the idempotency cache (only proposal rows were written), so
* every cycle re-spent the extractor call on the same unchanged page.
* Live impact: ~60 such pages × every cycle ≈ 1,400 wasted LLM calls
* (~$15) per day — ~90% of total autopilot spend. Fix: status='empty'
* sentinel row per zero-claim scan.
*
* 2. DROPPED CLAIMS — the 4-column unique index collapsed a same-page
* multi-claim run to its first claim (rows 2..N conflicted, ON CONFLICT
* DO NOTHING dropped them silently; verified live: exactly 1 row per
* (page, hash) over 3 days). Fix: idempotency index gains
* md5(claim_text).
*
* Hermetic: PGLite engine + injected extractor; no gateway, no LLM.
*/
import { describe, test, expect, beforeAll, afterAll } from 'bun:test';
import { PGLiteEngine } from '../src/core/pglite-engine.ts';
import { runPhaseProposeTakes, type ProposeTakesExtractor, type ProposedTake } from '../src/core/cycle/propose-takes.ts';
import type { OperationContext } from '../src/core/operations.ts';
let engine: PGLiteEngine;
function ctx(): OperationContext {
return {
engine,
remote: false,
config: {} as OperationContext['config'],
logger: { info() {}, warn() {}, error() {}, debug() {} } as unknown as OperationContext['logger'],
} as unknown as OperationContext;
}
/** Extractor stub that counts invocations per page slug. */
function countingExtractor(
claimsBySlug: Record<string, ProposedTake[]>,
): { extractor: ProposeTakesExtractor; calls: string[] } {
const calls: string[] = [];
const extractor: ProposeTakesExtractor = async ({ pagePath }) => {
calls.push(pagePath);
return claimsBySlug[pagePath] ?? [];
};
return { extractor, calls };
}
beforeAll(async () => {
engine = new PGLiteEngine();
await engine.connect({});
await engine.initSchema();
await engine.putPage('notes/zero-claims', {
type: 'note',
title: 'pure narrative',
compiled_truth: 'A quiet walk in the park. Nothing opinionated happened at all today.',
});
await engine.putPage('notes/three-claims', {
type: 'note',
title: 'opinionated',
compiled_truth: 'I bet acme-example wins the market. widget-co will struggle. fund-a is overexposed.',
});
});
afterAll(async () => {
await engine.disconnect();
});
describe('rescan loop — zero-claim scans enter the cache', () => {
test('second run cache-hits: extractor is NOT called again on unchanged pages', async () => {
const claims = {
'notes/three-claims': [
{ claim_text: 'acme-example wins the market', kind: 'bet' as const, holder: 'brain', weight: 0.7 },
{ claim_text: 'widget-co will struggle', kind: 'take' as const, holder: 'brain', weight: 0.6 },
{ claim_text: 'fund-a is overexposed', kind: 'take' as const, holder: 'brain', weight: 0.55 },
],
};
const first = countingExtractor(claims);
const r1 = await runPhaseProposeTakes(ctx(), { extractor: first.extractor });
expect(r1.status).toBe('ok');
// Both pages extracted on the first pass.
expect(first.calls).toContain('notes/zero-claims');
expect(first.calls).toContain('notes/three-claims');
const second = countingExtractor(claims);
const r2 = await runPhaseProposeTakes(ctx(), { extractor: second.extractor });
expect(r2.status).toBe('ok');
// THE regression: pre-fix the zero-claim page missed the cache every
// run and was re-extracted here. (Run 1's receipt page legitimately
// appears once — it's a new page — and its zero-claim scan now caches
// too; pre-fix, receipts re-scanned forever as well.)
expect(second.calls).not.toContain('notes/zero-claims');
expect(second.calls).not.toContain('notes/three-claims');
// Run 2 inserted nothing, so no new receipt page exists: run 3 must be
// fully quiescent — zero extractor calls, zero cache misses.
const third = countingExtractor(claims);
const r3 = await runPhaseProposeTakes(ctx(), { extractor: third.extractor });
expect(r3.status).toBe('ok');
expect(third.calls).toEqual([]);
expect((r3.details as Record<string, unknown>).cache_misses).toBe(0);
});
test('zero-claim scan wrote an "empty" sentinel invisible to the pending queue', async () => {
const sentinel = await engine.executeRaw<{ status: string; claim_text: string }>(
`SELECT status, claim_text FROM take_proposals WHERE page_slug = 'notes/zero-claims'`,
[],
);
expect(sentinel.length).toBe(1);
expect(sentinel[0].status).toBe('empty');
expect(sentinel[0].claim_text).toBe('');
const pending = await engine.executeRaw<{ n: number }>(
`SELECT COUNT(*)::int AS n FROM take_proposals WHERE page_slug = 'notes/zero-claims' AND status = 'pending'`,
[],
);
expect(Number(pending[0].n)).toBe(0);
});
});
describe('dropped claims — per-claim rows survive the idempotency index', () => {
test('a 3-claim page stores 3 rows and reports an honest inserted count', async () => {
const rows = await engine.executeRaw<{ claim_text: string }>(
`SELECT claim_text FROM take_proposals WHERE page_slug = 'notes/three-claims' AND status = 'pending' ORDER BY id`,
[],
);
// Pre-fix the 4-column unique index kept only the FIRST claim.
expect(rows.length).toBe(3);
expect(rows.map(r => r.claim_text)).toEqual([
'acme-example wins the market',
'widget-co will struggle',
'fund-a is overexposed',
]);
});
test('content change re-extracts and stores the new version separately', async () => {
await engine.putPage('notes/zero-claims', {
type: 'note',
title: 'pure narrative',
compiled_truth: 'Updated: I now believe acme-example is undervalued and will re-rate within a year.',
});
const claims = {
'notes/zero-claims': [
{ claim_text: 'acme-example is undervalued', kind: 'take' as const, holder: 'brain', weight: 0.6 },
],
};
const run = countingExtractor(claims);
const r = await runPhaseProposeTakes(ctx(), { extractor: run.extractor });
expect(r.status).toBe('ok');
// Changed page re-extracts; the unchanged 3-claim page stays cached.
expect(run.calls).toEqual(['notes/zero-claims']);
expect((r.details as Record<string, unknown>).proposals_inserted).toBe(1);
const all = await engine.executeRaw<{ status: string }>(
`SELECT status FROM take_proposals WHERE page_slug = 'notes/zero-claims' ORDER BY id`,
[],
);
// Old hash's sentinel + new hash's pending claim coexist.
expect(all.map(r2 => r2.status).sort()).toEqual(['empty', 'pending']);
});
});
+1 -33
View File
@@ -41,16 +41,12 @@ interface CapturedSql {
function buildMockEngine(opts: {
pages: Page[];
existingProposals?: Set<string>; // composite-key strings already in take_proposals
config?: Record<string, string>; // engine.getConfig plane (models.tier.* etc.)
}): { engine: BrainEngine; captured: CapturedSql[] } {
const captured: CapturedSql[] = [];
const existing = opts.existingProposals ?? new Set<string>();
const engine = {
kind: 'pglite',
async getConfig(key: string) {
return opts.config?.[key] ?? null;
},
async listPages() {
return opts.pages;
},
@@ -63,12 +59,7 @@ function buildMockEngine(opts: {
if (existing.has(key)) return [{ id: 1 } as unknown as T];
return [];
}
// INSERT ... RETURNING id — emulate a successful insert so the
// honest proposals_inserted counter (counts RETURNING rows, not
// attempts) sees the row land. Conflicted inserts would return [].
if (sql.includes('INSERT INTO take_proposals') && sql.includes('RETURNING id')) {
return [{ id: 1 } as unknown as T];
}
// INSERT — return nothing
return [];
},
} as unknown as BrainEngine;
@@ -276,29 +267,6 @@ describe('runPhaseProposeTakes — phase integration', () => {
expect(inserts[0]!.params[9]).toBe('market'); // domain
});
test('extractor model resolves through models.propose_takes config', async () => {
// Pre-fix the phase's only model knob was the gateway chat model — there
// was no per-phase config key. The phase now resolves once via
// resolveModel(models.propose_takes > models.default > env > gateway
// chat model); the extractor hint and the stored model_id must both
// reflect the configured override (full provider-prefixed string, #2451).
const pages = [buildPage({ slug: 'wiki/concepts/tier-routing', body: 'Tier-routed models will win.' })];
const { engine, captured } = buildMockEngine({
pages,
config: { 'models.propose_takes': 'anthropic:claude-sonnet-5' },
});
const seen: Array<string | undefined> = [];
const extractor: ProposeTakesExtractor = async ({ modelHint }) => {
seen.push(modelHint);
return [{ claim_text: 'tier-routed models win', kind: 'bet', holder: 'brain', weight: 0.7 }];
};
const result = await runPhaseProposeTakes(buildCtx(engine), { extractor });
expect(result.status).toBe('ok');
expect(seen).toEqual(['anthropic:claude-sonnet-5']); // chat call gets the FULL string
const inserts = captured.filter(c => c.sql.includes('INSERT INTO take_proposals'));
expect(inserts[0]!.params[11]).toBe('anthropic:claude-sonnet-5'); // stored model_id matches the call
});
test('cache hit: page already in take_proposals is skipped', async () => {
const body = 'A page that was already processed.';
const pages = [buildPage({ slug: 'wiki/old-page', body })];
@@ -0,0 +1,62 @@
// test/remediation-context-extraction-lag.test.ts
//
// Pins the v-next fix: the sync→extract remediation pipeline gates on REAL
// extraction lag, not the legacy `health.stale_pages` proxy (which counted
// "updated_at predates newest timeline entry" — meaningless after the v10
// trigger drop). loadRecommendationContext now populates `extractionLagPages`
// from `engine.countStalePagesForExtraction` — the SAME counter the
// `gbrain extract --stale` walk and doctor's `links_extraction_lag` use — so a
// recommendation can only fire when running extract will actually reduce it.
import { afterAll, beforeAll, describe, expect, it } from 'bun:test';
import { PGLiteEngine } from '../src/core/pglite-engine.ts';
import { loadRecommendationContext } from '../src/core/remediation/context.ts';
let engine: PGLiteEngine;
beforeAll(async () => {
engine = new PGLiteEngine();
await engine.connect({});
await engine.initSchema();
});
afterAll(async () => {
await engine.disconnect();
});
describe('loadRecommendationContext — extractionLagPages wiring', () => {
it('is 0 on an empty brain (nothing to extract)', async () => {
const ctx = await loadRecommendationContext(engine);
expect(ctx.extractionLagPages).toBe(0);
});
it('reflects the real extraction-lag count once a page needs extraction', async () => {
// A freshly-imported page has links_extracted_at = NULL, which the canonical
// countStalePagesForExtraction predicate counts as stale-for-extraction.
await engine.putPage('p0', {
title: 'p0',
type: 'note' as never,
compiled_truth: 'body that is long enough to pass any minimum-length guards in the codebase',
timeline: '',
frontmatter: {},
source_path: 'p0.md',
});
const ctx = await loadRecommendationContext(engine);
expect(ctx.extractionLagPages).toBeGreaterThan(0);
});
it('counts pages stamped before LINK_EXTRACTOR_VERSION_TS (version-bump arm)', async () => {
// Backdate p0 so BOTH the NULL arm and the updated_at arm are quiet:
// updated_at < links_extracted_at, but links_extracted_at predates the
// extractor version stamp. doctor's links_extraction_lag and
// `extract --stale` both count this page; the remediation gate must too.
await engine.executeRaw(
`UPDATE pages SET updated_at = '2020-01-01T00:00:00Z'::timestamptz,
links_extracted_at = '2020-01-02T00:00:00Z'::timestamptz
WHERE slug = 'p0'`,
[],
);
const ctx = await loadRecommendationContext(engine);
expect(ctx.extractionLagPages).toBeGreaterThan(0);
});
});
@@ -0,0 +1,81 @@
// test/remediation-run-d7-refresh.serial.test.ts
//
// Pins the D7-recheck half of the extraction-lag gate fix: runRemediation
// loads RecommendationContext ONCE before the step loop, and the per-step
// recheck (D7) must REFRESH ctx.extractionLagPages alongside getHealth.
// Without the refresh, a completed sync/extract step keeps re-firing off
// the frozen initial count — the plan never converges and the loop burns
// steps until maxJobs.
//
// SERIAL (R2): uses top-level mock.module for the minion queue +
// wait-for-completion so no real worker is needed — mocks leak across
// files in a shard process, so this file must run in its own process.
import { describe, expect, mock, test } from 'bun:test';
// The fake brain: sync.repo clears the extraction lag when it "runs"
// (today's sync materializes link/timeline edges; extract.all is the
// explicit re-materializer). The frozen-ctx bug makes runRemediation
// ignore that and resubmit sync.repo on every D7 recheck.
let extractionLag = 25;
const submittedJobs: string[] = [];
mock.module('../src/core/minions/queue.ts', () => ({
MinionQueue: class {
constructor(_engine: unknown) {}
async add(job: string): Promise<{ id: number }> {
submittedJobs.push(job);
if (job === 'sync' || job === 'extract') extractionLag = 0;
return { id: submittedJobs.length };
}
},
}));
mock.module('../src/core/minions/wait-for-completion.ts', () => ({
waitForCompletion: async () => ({ status: 'completed' }),
}));
const health = () => ({
page_count: 100,
embed_coverage: 1.0,
stale_pages: 0, // legacy proxy stays 0 — the real counter drives the gate
orphan_pages: 0,
missing_embeddings: 0,
brain_score: 70,
dead_links: 0,
link_coverage: 1.0,
timeline_coverage: 1.0,
most_connected: [],
embed_coverage_score: 35,
link_density_score: 25,
timeline_coverage_score: 15,
no_orphans_score: 15,
no_dead_links_score: 10,
});
const fakeEngine = {
kind: 'pglite' as const,
getHealth: async () => health(),
getConfig: async (key: string) =>
key === 'sync.repo_path' ? '/tmp/brain-example' : null,
countStalePagesForExtraction: async () => extractionLag,
};
describe('runRemediation D7 recheck — extraction-lag gate refresh', () => {
test('a completed materializer step clears the gate; the pipeline is not resubmitted', async () => {
const { runRemediation } = await import('../src/core/remediation/run.ts');
const result = await runRemediation(
// Only the methods the orchestrator touches are needed.
fakeEngine as never,
{ targetScore: 0, maxJobs: 6 },
);
// Frozen-ctx bug: extractionLagPages stays 25 forever, so every D7
// recheck re-introduces the sync/extract pipeline and the loop burns
// all 6 maxJobs. With the refresh, the plan converges after the first
// completed step: no step id is ever submitted twice.
const ids = result.submitted.map((s) => s.id);
expect(new Set(ids).size).toBe(ids.length);
expect(submittedJobs.length).toBeLessThan(3);
expect(extractionLag).toBe(0);
});
});