test(calibration): replace real-name holder fixture with charlie-example placeholder

Privacy iron rule: no real people's names in checked-in code. The sanctioned
placeholder mapping uses people/charlie-example.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

docs/takes-vs-facts.md

@@ -91,3 +91,18 @@ First full takes extraction run on a ~100K-page brain:
 4. **Self-reported ≠ verified.** "Reports 7 figures" → holder=person, weight=0.75, NOT world/1.0
 5. **No false precision.** Use 0.05 increments (0.35, 0.55, 0.75), not 0.74 or 0.82
 6. **"So what" test.** Skip Twitter handles, follower counts, obvious metadata
+
+## Owner-holder canonicalization
+
+"The brain owner" is, by convention, the holder string **`self`** — the value the
+dream `consolidate` phase stamps when it promotes the owner's hot facts into cold
+takes. Calibration, `think`, and the `doctor` calibration check resolve the owner
+holder through `resolveOwnerHolder` (`src/core/owner-holder.ts`): explicit override
+> `emotional_weight.user_holder` config > `self`.
+
+Known limitation (tracked in garrytan/gbrain#2465): the owner can also
+appear under `brain` (a take the owner asserts, via `propose_takes`) and
+`people/<owner>` (extraction that names the owner). The resolver selects the
+*default* canonical owner string for reads; it does not merge those other
+strings. Per-take attribution for other people (e.g. `people/george`) is
+unaffected and correct.

skills/article-enrichment/SKILL.md

@@ -85,10 +85,6 @@ gbrain get media/articles/<slug>
 
 # 5. Cross-link entities
 #    For every person/company mentioned, add a timeline back-link.
-#    Mark NEW pages minted for article subjects the reader only reads ABOUT
-#    (not personal contacts) as reference: `gbrain reference <slug>`
-#    (or reference: true in frontmatter). Exempts them from coverage nudges;
-#    they stay searchable. Default for real contacts: do NOT set it.
 ```
 
 ## Quality bar

skills/book-mirror/SKILL.md

@@ -273,13 +273,6 @@ Cross-link entities mentioned in the analysis:
 - For every person the right column references with a brain page, add a
   back-link from `people/<slug>` to the new `media/books/<slug>-personalized`
   page (per `conventions/quality.md` Iron Law).
-- **Mark book figures as reference entities.** Any NEW person/company page you
-  mint for a figure from the book (an author, a historical figure, a company
-  the book discusses) — someone the reader reads ABOUT but doesn't personally
-  interact with — should be flagged: `gbrain reference <slug>` (or
-  `reference: true` in frontmatter). They stay fully searchable/linkable but
-  are exempt from coverage nudges (timeline/links). Skip this for anyone the
-  reader actually knows. Default for normal contacts: do NOT set it.
 
 ## Quality bar (the bar)
 

skills/conventions/reference-entities.md

@@ -1,62 +0,0 @@
-# Convention: Reference entities (canon figures)
-
-Some person/company pages are people/orgs the user **reads about** but does not
-personally interact with — a book's author, a historical figure, a company an
-article discusses (Andy Grove, Kleiner Perkins, Intel…). They are real
-knowledge, worth a page, but they have **no dated history in the user's own
-life**, so the entity coverage metrics (`timeline_coverage`,
-`entity_link_coverage`) flag them as permanently incomplete with no honest fix.
-
-The `reference: true` frontmatter flag resolves this.
-
-## What it does
-
-- A page with `reference: true` is **exempt from the entity coverage metrics
-  only** (`timeline_coverage`, `entity_link_coverage`, and their onboard
-  nudges).
-- It keeps its real `type` (`person` / `company`), so it stays **fully
-  searchable, enrichable, linkable, and edge-resolvable**. NOTHING about
-  retrieval changes — this is the whole reason it's a flag, not a new `type`.
-- It is **opt-in**. Absent / `false` / anything-but-`true` = a normal entity
-  that DOES count toward coverage. **This is the default — do not set it on real
-  contacts.**
-
-## When to set it
-
-Set `reference: true` when the entity is a figure/org the user reads ABOUT, not
-someone they deal with:
-
-- authors and figures discussed in a book (book-mirror) or article
-  (article-enrichment)
-- historical / canon figures imported as reference knowledge
-- companies named only as examples in source material
-
-Do NOT set it for people the user actually meets, emails, or works with — those
-are normal entities whose missing timeline/links is a real, actionable gap.
-
-## How to set it
-
-```bash
-gbrain reference <slug>            # mark as reference
-gbrain reference <slug> --unset    # back to a normal entity
-```
-
-The command writes the flag to BOTH the markdown frontmatter (durable; survives
-re-ingest / engine rebuild — markdown is the source of truth) AND the engine
-JSONB (so coverage reflects it immediately, no re-sync). It's idempotent. You
-can also hand-edit frontmatter (`reference: true`) and re-ingest.
-
-## Why a flag, not a type
-
-A new `type: reference-person` would drop the page out of every
-`type IN ('person','company')` filter — search, enrichment, whoknows, link
-inference — so you'd lose the figure everywhere, not just the metric. The flag
-narrows the change to exactly the coverage denominators and nothing else.
-
-## Implementation
-
-`src/core/reference-flag.ts` — `referenceExclusionSql(alias?)` is the single
-source of truth for the predicate `(frontmatter->>'reference') IS DISTINCT FROM
-'true'`, ANDed into both numerator and denominator at every coverage site
-(getHealth in both engines, onboard/checks.ts, init-nudge.ts). Backed by the GIN
-index on `pages.frontmatter`.

skills/enrich/SKILL.md

@@ -268,18 +268,6 @@ Active items, pending decisions, things to track.
 - **YYYY-MM-DD** | Event description [Source: ...]
 ```
 
-### Reference entities (canon figures)
-
-If the entity is someone/something the user reads ABOUT but does not personally
-interact with — a book author, a historical figure, a company discussed in an
-article — mark the page as reference: `gbrain reference <slug>` (or
-`reference: true` in frontmatter). Reference pages keep their `person`/`company`
-type and stay fully searchable, enrichable, and linkable; they are only exempt
-from the entity coverage nudges (timeline/links) that don't apply to figures
-with no dated history in the user's own life. **Default: do NOT set it** — real
-people and companies the user deals with are normal entities. Full convention:
-`conventions/reference-entities.md`.
-
 ### Step 7: Cross-reference
 
 - Update company pages from person enrichment (and vice versa)

skills/maintain/SKILL.md

@@ -270,11 +270,6 @@ Populate them periodically or after major imports:
 - `gbrain stats` — verify `link_count > 0` and `timeline_entry_count > 0` after extraction.
 - `gbrain health` — review `link_coverage` and `timeline_coverage` percentages
   on entity pages (person/company). Below 50% means more extraction is needed.
-  Note: pages flagged `reference: true` (canon/reference figures the user only
-  reads about) are EXEMPT from these two metrics — if coverage looks stuck
-  because of book/article-imported figures with no real history, mark them with
-  `gbrain reference <slug>` rather than chasing the percentage. See
-  `conventions/reference-entities.md`.
 
 Available link types (use with `gbrain graph-query --type`):
 `attended`, `works_at`, `invested_in`, `founded`, `advises`, `mentions`, `source`.

src/cli.ts

@@ -54,7 +54,7 @@ export function bigintToStringReplacer(_key: string, value: unknown): unknown {
 }
 
 // CLI-only commands that bypass the operation layer
-export const CLI_ONLY = new Set(['init', 'reinit-pglite', 'upgrade', 'post-upgrade', 'check-update', 'integrations', 'publish', 'check-backlinks', 'lint', 'report', 'import', 'export', 'files', 'embed', 'serve', 'call', 'config', 'doctor', 'migrate', 'eval', 'sync', 'extract', 'extract-conversation-facts', 'enrich', 'reference', 'features', 'autopilot', 'graph-query', 'jobs', 'agent', 'apply-migrations', 'skillpack-check', 'skillpack', 'resolvers', 'integrity', 'repair-jsonb', 'orphans', 'sources', 'mounts', 'dream', 'check-resolvable', 'routing-eval', 'skillify', 'smoke-test', 'providers', 'storage', 'repos', 'code-def', 'code-refs', 'reindex', 'reindex-code', 'reindex-frontmatter', 'code-callers', 'code-callees', 'reconcile-links', 'frontmatter', 'auth', 'friction', 'claw-test', 'book-mirror', 'takes', 'think', 'salience', 'anomalies', 'calibration', 'transcripts', 'models', 'remote', 'recall', 'forget', 'edges-backfill', 'cache', 'ze-switch', 'founder', 'brainstorm', 'lsd', 'schema', 'capture', 'onboard', 'conversation-parser', 'status', 'connect', 'skillopt', 'quarantine', 'self-upgrade', 'advisor', 'watch', 'reindex-search-vector']);
+export const CLI_ONLY = new Set(['init', 'reinit-pglite', 'upgrade', 'post-upgrade', 'check-update', 'integrations', 'publish', 'check-backlinks', 'lint', 'report', 'import', 'export', 'files', 'embed', 'serve', 'call', 'config', 'doctor', 'migrate', 'eval', 'sync', 'extract', 'extract-conversation-facts', 'enrich', 'features', 'autopilot', 'graph-query', 'jobs', 'agent', 'apply-migrations', 'skillpack-check', 'skillpack', 'resolvers', 'integrity', 'repair-jsonb', 'orphans', 'sources', 'mounts', 'dream', 'check-resolvable', 'routing-eval', 'skillify', 'smoke-test', 'providers', 'storage', 'repos', 'code-def', 'code-refs', 'reindex', 'reindex-code', 'reindex-frontmatter', 'code-callers', 'code-callees', 'reconcile-links', 'frontmatter', 'auth', 'friction', 'claw-test', 'book-mirror', 'takes', 'think', 'salience', 'anomalies', 'calibration', 'transcripts', 'models', 'remote', 'recall', 'forget', 'edges-backfill', 'cache', 'ze-switch', 'founder', 'brainstorm', 'lsd', 'schema', 'capture', 'onboard', 'conversation-parser', 'status', 'connect', 'skillopt', 'quarantine', 'self-upgrade', 'advisor', 'watch', 'reindex-search-vector']);
 // CLI-only commands whose handlers print their own --help text. These are
 // excluded from the generic short-circuit so detailed per-command and
 // per-subcommand usage stays reachable.
@@ -1652,11 +1652,6 @@ async function handleCliOnly(command: string, args: string[]) {
         await runFiles(engine, args);
         break;
       }
-      case 'reference': {
-        const { runReference } = await import('./commands/reference.ts');
-        await runReference(engine, args);
-        break;
-      }
       case 'embed': {
         const { runEmbed } = await import('./commands/embed.ts');
         await runEmbed(engine, args);

src/commands/calibration.ts

@@ -23,6 +23,7 @@ import { runPhaseCalibrationProfile } from '../core/cycle/calibration-profile.ts
 import { sourceScopeOpts, type OperationContext } from '../core/operations.ts';
 import type { GBrainConfig } from '../core/config.ts';
 import { GBrainError } from '../core/types.ts';
+import { resolveOwnerHolder } from '../core/owner-holder.ts';
 
 export interface CalibrationProfileRow {
   /** BIGSERIAL → string (postgres.js int8 wire shape; never Number() — int8
@@ -167,7 +168,10 @@ export async function runCalibration(
   config: GBrainConfig,
 ): Promise<void> {
   const { opts } = parseArgs(args);
-  const holder = opts.holder ?? 'garry';
+  const holder = resolveOwnerHolder({
+    override: opts.holder,
+    configValue: await engine.getConfig('emotional_weight.user_holder'),
+  });
   // Resolve --source / GBRAIN_SOURCE / .gbrain-source so the (now reachable, #2035)
   // calibration command targets the right source in a multi-source brain instead
   // of always reading `default`. No signal → 'default' (prior behavior).
@@ -253,12 +257,15 @@ export async function getCalibrationProfileOp(
   ctx: OperationContext,
   params: { holder?: string },
 ): Promise<CalibrationProfileRow | null> {
-  const holder = params.holder ?? 'garry';
+  const holder = resolveOwnerHolder({
+    override: params.holder,
+    configValue: await ctx.engine.getConfig('emotional_weight.user_holder'),
+  });
   if (typeof holder !== 'string' || holder.length === 0) {
     throw new GBrainError(
       'INVALID_HOLDER',
       'get_calibration_profile.holder must be a non-empty string',
-      'pass holder="<slug>" or omit to default to "garry"',
+      'pass holder="<slug>" or omit to default to the owner holder (config emotional_weight.user_holder, else "self")',
     );
   }
   const scope = sourceScopeOpts(ctx);

src/commands/doctor.ts

@@ -28,6 +28,7 @@ import type { DbUrlSource } from '../core/config.ts';
 import { gbrainPath, loadConfig } from '../core/config.ts';
 import { reflexEnabled } from '../core/context/reflex.ts';
 import { resolveSocketPath } from '../core/context/resolve-ipc.ts';
+import { resolveOwnerHolder } from '../core/owner-holder.ts';
 import { homedir } from 'os';
 import { dirname, isAbsolute, join, resolve as resolvePath } from 'path';
 import { fileURLToPath } from 'url';
@@ -1287,14 +1288,19 @@ export async function checkAbandonedThreads(engine: BrainEngine): Promise<Check>
 
 /**
  * calibration_freshness: warns when the active calibration profile is
- * older than 7 days (configurable). Default holder 'garry'. Multi-source
+ * older than 7 days (configurable). Default holder resolves via resolveOwnerHolder
+ * (config emotional_weight.user_holder, else 'self'). Multi-source
  * brains see one row per source; this check uses the most recent across
  * all sources.
  */
 export async function checkCalibrationFreshness(engine: BrainEngine): Promise<Check> {
   try {
+    const ownerHolder = resolveOwnerHolder({
+      configValue: await engine.getConfig('emotional_weight.user_holder'),
+    });
     const rows = await engine.executeRaw<{ generated_at: Date | null }>(
-      `SELECT MAX(generated_at) AS generated_at FROM calibration_profiles WHERE holder = 'garry'`,
+      `SELECT MAX(generated_at) AS generated_at FROM calibration_profiles WHERE holder = $1`,
+      [ownerHolder],
     );
     const generated = rows[0]?.generated_at;
     if (!generated) {

src/commands/reference.ts

@@ -1,130 +0,0 @@
-// gbrain reference <slug> [--unset] [--brain <dir>] [--json]
-//
-// Mark (or unmark) a page as a reference-only entity. A reference page keeps its
-// real type (person/company) — fully searchable/enrichable/linkable — but is
-// exempt from the entity coverage metrics (timeline_coverage,
-// entity_link_coverage). See src/core/reference-flag.ts for the rationale.
-//
-// Durability: the flag is written to BOTH the markdown frontmatter (source of
-// truth; survives re-ingest / engine rebuild) AND the engine `pages.frontmatter`
-// JSONB (so the metric reflects it immediately, no re-sync needed).
-
-import { existsSync, readFileSync, writeFileSync } from 'node:fs';
-import { isAbsolute, join, resolve } from 'node:path';
-import { setCliExitVerdict } from '../core/cli-force-exit.ts';
-import type { BrainEngine } from '../core/engine.ts';
-import { REFERENCE_FRONTMATTER_KEY } from '../core/reference-flag.ts';
-import { resolveSourceId } from '../core/source-resolver.ts';
-
-/** Insert/replace/remove `reference: true` in a markdown frontmatter block.
- *  Minimal-diff: only the one line changes; key order is otherwise preserved. */
-export function applyReferenceFrontmatter(content: string, on: boolean): string {
-  const keyLine = `${REFERENCE_FRONTMATTER_KEY}: true`;
-  const block = content.match(/^---\n([\s\S]*?)\n---/);
-
-  if (!block) {
-    // No frontmatter. Nothing to remove; if setting, prepend a block.
-    if (!on) return content;
-    return `---\n${keyLine}\n---\n\n${content}`;
-  }
-
-  let fm = block[1];
-  const hasKey = new RegExp(`^${REFERENCE_FRONTMATTER_KEY}:.*$`, 'm').test(fm);
-
-  if (on) {
-    fm = hasKey
-      ? fm.replace(new RegExp(`^${REFERENCE_FRONTMATTER_KEY}:.*$`, 'm'), keyLine)
-      : `${fm}\n${keyLine}`;
-  } else {
-    if (!hasKey) return content;
-    fm = fm.replace(new RegExp(`^${REFERENCE_FRONTMATTER_KEY}:.*$\\n?`, 'm'), '');
-  }
-
-  // Function replacement so YAML chars ($, & …) in fm aren't treated as
-  // replacement patterns.
-  return content.replace(/^---\n[\s\S]*?\n---/, () => `---\n${fm}\n---`);
-}
-
-function parseArgs(args: string[]): { slug?: string; unset: boolean; json: boolean; brain?: string; source?: string } {
-  let slug: string | undefined;
-  let unset = false;
-  let json = false;
-  let brain: string | undefined;
-  let source: string | undefined;
-  for (let i = 0; i < args.length; i++) {
-    const a = args[i];
-    if (a === '--unset') unset = true;
-    else if (a === '--json') json = true;
-    else if (a === '--brain' || a === '--dir') brain = args[++i];
-    else if (a === '--source') source = args[++i];
-    else if (!a.startsWith('--') && !slug) slug = a;
-  }
-  return { slug, unset, json, brain, source };
-}
-
-async function resolveBrainDir(engine: BrainEngine, explicit?: string): Promise<string | null> {
-  if (explicit) return resolve(explicit);
-  const configured = await engine.getConfig('sync.repo_path');
-  if (configured && existsSync(configured)) return resolve(configured);
-  return null;
-}
-
-export async function runReference(engine: BrainEngine, args: string[]): Promise<void> {
-  const { slug, unset, json, brain, source } = parseArgs(args);
-  if (!slug) {
-    console.error('Usage: gbrain reference <slug> [--unset] [--source <id>] [--brain <dir>] [--json]');
-    setCliExitVerdict(2);
-    return;
-  }
-
-  const brainDir = await resolveBrainDir(engine, brain);
-  if (!brainDir) {
-    console.error('reference: could not resolve brain dir. Pass --brain <dir> or set sync.repo_path.');
-    setCliExitVerdict(1);
-    return;
-  }
-
-  const rel = slug.endsWith('.md') ? slug : `${slug}.md`;
-  const filePath = isAbsolute(rel) ? rel : join(brainDir, rel);
-  if (!existsSync(filePath)) {
-    console.error(`reference: page not found on disk: ${filePath}`);
-    setCliExitVerdict(1);
-    return;
-  }
-
-  // 1) Durable: edit the markdown frontmatter.
-  const before = readFileSync(filePath, 'utf8');
-  const after = applyReferenceFrontmatter(before, !unset);
-  const fileChanged = after !== before;
-  if (fileChanged) writeFileSync(filePath, after, 'utf8');
-
-  // 2) Immediate: update the engine frontmatter JSONB so the metric reflects it
-  //    without waiting for a re-sync. Scoped to (source_id, slug) — slug is only
-  //    unique per source, so a bare-slug UPDATE would clobber same-named pages
-  //    in every other source. Resolve the source from the brain dir (tier-4
-  //    local_path match) unless --source / GBRAIN_SOURCE overrides.
-  const cleanSlug = slug.replace(/\.md$/, '');
-  const sourceId = await resolveSourceId(engine, source ?? null, brainDir);
-  if (unset) {
-    await engine.executeRaw(
-      `UPDATE pages SET frontmatter = frontmatter - '${REFERENCE_FRONTMATTER_KEY}' WHERE slug = $1 AND source_id = $2`,
-      [cleanSlug, sourceId],
-    );
-  } else {
-    await engine.executeRaw(
-      `UPDATE pages SET frontmatter = jsonb_set(COALESCE(frontmatter, '{}'::jsonb), '{${REFERENCE_FRONTMATTER_KEY}}', 'true'::jsonb) WHERE slug = $1 AND source_id = $2`,
-      [cleanSlug, sourceId],
-    );
-  }
-
-  const result = { slug: cleanSlug, source_id: sourceId, reference: !unset, file_changed: fileChanged, file: filePath };
-  if (json) {
-    console.log(JSON.stringify(result));
-  } else {
-    const verb = unset ? 'unmarked' : 'marked';
-    console.log(`${verb} ${cleanSlug} as reference=${!unset}${fileChanged ? '' : ' (frontmatter already current)'}`);
-    if (!unset) {
-      console.log('  → exempt from timeline_coverage / entity_link_coverage; still fully searchable & linkable.');
-    }
-  }
-}

src/commands/serve-http.ts

@@ -45,6 +45,7 @@ import {
   type IngestionContentType,
   type IngestionEvent,
 } from '../core/ingestion/types.ts';
+import { resolveOwnerHolder } from '../core/owner-holder.ts';
 
 /**
  * /health endpoint timeout. 3s rather than 5s: Fly.io's default
@@ -1190,7 +1191,7 @@ export async function runServeHttp(engine: BrainEngine, options: ServeHttpOption
   app.get('/admin/api/calibration/pattern/:id', requireAdmin, async (req: Request, res: Response) => {
     try {
       const { getLatestProfile } = await import('./calibration.ts');
-      const holder = (req.query.holder as string) || 'garry';
+      const holder = resolveOwnerHolder({ override: (req.query.holder as string) || undefined, configValue: await engine.getConfig('emotional_weight.user_holder') });
       const profile = await getLatestProfile(engine, { holder });
       if (!profile) {
         res.status(404).json({ error: 'no_profile' });
@@ -1240,7 +1241,7 @@ export async function runServeHttp(engine: BrainEngine, options: ServeHttpOption
   app.get('/admin/api/calibration/profile', requireAdmin, async (req: Request, res: Response) => {
     try {
       const { getLatestProfile } = await import('./calibration.ts');
-      const holder = (req.query.holder as string) || 'garry';
+      const holder = resolveOwnerHolder({ override: (req.query.holder as string) || undefined, configValue: await engine.getConfig('emotional_weight.user_holder') });
       const profile = await getLatestProfile(engine, { holder });
       res.json(profile);
     } catch (err) {
@@ -1257,7 +1258,7 @@ export async function runServeHttp(engine: BrainEngine, options: ServeHttpOption
         renderAbandonedThreadsCard,
         renderPatternStatementsCard,
       } = await import('../core/calibration/svg-renderer.ts');
-      const holder = (req.query.holder as string) || 'garry';
+      const holder = resolveOwnerHolder({ override: (req.query.holder as string) || undefined, configValue: await engine.getConfig('emotional_weight.user_holder') });
       const type = req.params.type;
       const profile = await getLatestProfile(engine, { holder });
 

src/commands/takes.ts

@@ -29,6 +29,7 @@ import {
 } from '../core/takes-fence.ts';
 import { withPageLock } from '../core/page-lock.ts';
 import { resolveSourceId } from '../core/source-resolver.ts';
+import { resolveOwnerHolder } from '../core/owner-holder.ts';
 
 // --- Helpers ---
 
@@ -364,7 +365,7 @@ async function cmdResolve(engine: BrainEngine, args: string[], sourceId?: string
   // --evidence is the v0.30.0 alias for --source on the resolve subcommand
   // (semantic clarity: "what evidence resolved this bet?").
   const source = flagValue(args, '--evidence') ?? flagValue(args, '--source');
-  const resolvedBy = flagValue(args, '--by') ?? 'garry';
+  const resolvedBy = flagValue(args, '--by') ?? resolveOwnerHolder({ configValue: await engine.getConfig('emotional_weight.user_holder') });
   const dirArg = flagValue(args, '--dir');
 
   const pageId = await getPageId(engine, slug, sourceId);

src/core/brainstorm/orchestrator.ts

@@ -68,6 +68,7 @@ import {
   type BrainstormCheckpoint,
   type CheckpointCross,
 } from './checkpoint.ts';
+import { resolveOwnerHolder } from '../owner-holder.ts';
 
 export { BudgetExhausted };
 
@@ -139,7 +140,7 @@ export interface BrainstormOptions {
   modelOverride?: string;
   /** Skip the cost-preview TTY grace window. Required for non-interactive callers. */
   skipCostPreview?: boolean;
-  /** When set, force the user holder for calibration profile lookup. Falls back to config (`emotional_weight.user_holder`) then `'garry'`. */
+  /** When set, force the user holder for calibration profile lookup. Falls back to config (`emotional_weight.user_holder`) then `'self'`. */
   holderOverride?: string;
   /** Source scope. */
   sourceId?: string;
@@ -623,7 +624,7 @@ async function _runBrainstormInner(
   }
 
   // ---- Phase 3: calibration context (cold-start fallback) ----
-  const holder = opts.holderOverride ?? config.emotional_weight?.user_holder ?? 'garry';
+  const holder = resolveOwnerHolder({ override: opts.holderOverride, configValue: config.emotional_weight?.user_holder });
   const calibContext = await loadCalibrationContext(engine, {
     holder,
     sourceId: opts.sourceId,

src/core/calibration/think-ab.ts

@@ -25,7 +25,7 @@ import type { BrainEngine } from '../engine.ts';
 
 export interface ABRunInput {
   question: string;
-  /** Holder context for calibration. Default 'garry'. */
+  /** Holder context for calibration. Resolves via resolveOwnerHolder (config emotional_weight.user_holder, else 'self'). */
   holder?: string;
   /** Engine for DB write. */
   engine: BrainEngine;

src/core/cycle/calibration-profile.ts

@@ -26,6 +26,7 @@
  */
 
 import { BaseCyclePhase, type ScopedReadOpts, type BasePhaseOpts } from './base-phase.ts';
+import { resolveOwnerHolder } from '../owner-holder.ts';
 import { chat as gatewayChat } from '../ai/gateway.ts';
 import { TIER_DEFAULTS } from '../model-config.ts';
 import { gateVoice, type VoiceGateGenerator, type VoiceGateJudge } from '../calibration/voice-gate.ts';
@@ -96,7 +97,7 @@ export type PatternStatementsGenerator = (input: {
 export type BiasTagsGenerator = (patterns: string[]) => Promise<string[]>;
 
 export interface CalibrationProfileOpts extends BasePhaseOpts {
-  /** Holder to generate the profile for. Default 'garry'. */
+  /** Holder to generate the profile for. Default resolves via resolveOwnerHolder (config emotional_weight.user_holder, else 'self'). */
   holder?: string;
   /** Inject the patterns generator (tests). */
   patternsGenerator?: PatternStatementsGenerator;
@@ -227,7 +228,10 @@ class CalibrationProfilePhase extends BaseCyclePhase {
     _ctx: OperationContext,
     opts: CalibrationProfileOpts,
   ): Promise<{ summary: string; details: Record<string, unknown>; status?: PhaseStatus }> {
-    const holder = opts.holder ?? 'garry';
+    const holder = resolveOwnerHolder({
+      override: opts.holder,
+      configValue: await engine.getConfig('emotional_weight.user_holder'),
+    });
     const promptVersion = opts.promptVersion ?? CALIBRATION_PROFILE_PROMPT_VERSION;
     const modelId = opts.model ?? TIER_DEFAULTS.reasoning;
     const gradeCompletion = opts.gradeCompletion ?? 1.0;

src/core/cycle/emotional-weight.ts

@@ -14,6 +14,8 @@
  * See `loadHighEmotionTags` for the resolution path.
  */
 
+import { DEFAULT_OWNER_HOLDER } from '../owner-holder.ts';
+
 /**
  * Default high-emotion tag seed list. Pages with any tag in this set get the
  * tag-emotion boost in the formula below. Override via config key
@@ -43,11 +45,12 @@ export const HIGH_EMOTION_TAGS: ReadonlySet<string> = new Set([
 ]);
 
 /**
- * Holder name treated as "the user" for the Garry-as-holder ratio. Configurable
- * via the `emotional_weight.user_holder` config key (defaults to 'garry' to
- * match the v0.28 schema's takes table convention).
+ * Holder name treated as "the user" for the user-as-holder ratio. Configurable
+ * via the `emotional_weight.user_holder` config key; defaults to the canonical
+ * owner holder ('self', DEFAULT_OWNER_HOLDER) so it matches the consolidate
+ * facts→takes writer instead of a hardcoded name.
  */
-export const DEFAULT_USER_HOLDER = 'garry';
+export const DEFAULT_USER_HOLDER = DEFAULT_OWNER_HOLDER;
 
 export interface EmotionalWeightTake {
   holder: string;

src/core/onboard/checks.ts

@@ -18,7 +18,6 @@
 import type { BrainEngine } from '../engine.ts';
 import type { RemediationStep } from '../remediation-step.ts';
 import { makeRemediationStep } from '../remediation-step.ts';
-import { referenceExclusionSql } from '../reference-flag.ts';
 
 /** Shared shape returned by all four checks. */
 export interface OnboardCheckResult {
@@ -121,8 +120,7 @@ export async function checkEntityLinkCoverage(
     engine,
     `SELECT COUNT(*) AS count FROM pages
        WHERE type IN ('person', 'company', 'organization', 'entity')
-         AND deleted_at IS NULL
-         AND ${referenceExclusionSql()}`,
+         AND deleted_at IS NULL`,
   );
 
   if (totalEntities === 0) {
@@ -146,7 +144,6 @@ export async function checkEntityLinkCoverage(
        SELECT p.id FROM pages p ${sampleClause}
        WHERE p.type IN ('person', 'company', 'organization', 'entity')
          AND p.deleted_at IS NULL
-         AND ${referenceExclusionSql('p')}
          AND EXISTS (SELECT 1 FROM links l WHERE l.to_page_id = p.id)
      ) sub`,
   );
@@ -218,8 +215,7 @@ export async function checkTimelineCoverage(
     engine,
     `SELECT COUNT(*) AS count FROM pages
        WHERE type IN ('person', 'company', 'organization', 'entity')
-         AND deleted_at IS NULL
-         AND ${referenceExclusionSql()}`,
+         AND deleted_at IS NULL`,
   );
 
   if (totalEntities === 0) {
@@ -241,7 +237,6 @@ export async function checkTimelineCoverage(
        SELECT p.id FROM pages p ${sampleClause}
        WHERE p.type IN ('person', 'company', 'organization', 'entity')
          AND p.deleted_at IS NULL
-         AND ${referenceExclusionSql('p')}
          AND EXISTS (SELECT 1 FROM timeline_entries t WHERE t.page_id = p.id)
      ) sub`,
   );

src/core/onboard/init-nudge.ts

@@ -14,7 +14,6 @@
 // also short-circuits (CI/scripted callers see nothing).
 
 import type { BrainEngine } from '../engine.ts';
-import { referenceExclusionSql } from '../reference-flag.ts';
 
 const NUDGE_BUDGET_MS = 3000;
 
@@ -58,8 +57,7 @@ export async function runInitNudge(engine: BrainEngine): Promise<void> {
       engine.executeRaw<{ count: string | number }>(
         `SELECT COUNT(*) AS count FROM pages
            WHERE type IN ('person', 'company', 'organization', 'entity')
-             AND deleted_at IS NULL
-             AND ${referenceExclusionSql()}`,
+             AND deleted_at IS NULL`,
         [],
         { signal: controller.signal },
       ),
@@ -67,7 +65,6 @@ export async function runInitNudge(engine: BrainEngine): Promise<void> {
         `SELECT COUNT(*) AS count FROM pages p
            WHERE p.type IN ('person', 'company', 'organization', 'entity')
              AND p.deleted_at IS NULL
-             AND ${referenceExclusionSql('p')}
              AND EXISTS (SELECT 1 FROM links l WHERE l.to_page_id = p.id)`,
         [],
         { signal: controller.signal },
@@ -76,7 +73,6 @@ export async function runInitNudge(engine: BrainEngine): Promise<void> {
         `SELECT COUNT(*) AS count FROM pages p
            WHERE p.type IN ('person', 'company', 'organization', 'entity')
              AND p.deleted_at IS NULL
-             AND ${referenceExclusionSql('p')}
              AND EXISTS (SELECT 1 FROM timeline_entries t WHERE t.page_id = p.id)`,
         [],
         { signal: controller.signal },

src/core/operations.ts

@@ -3289,7 +3289,7 @@ const get_calibration_profile: Operation = {
     holder: {
       type: 'string',
       description:
-        "Holder slug, e.g. 'garry' or 'people/charlie-example'. Defaults to 'garry' when omitted.",
+        "Holder slug, e.g. 'self' or 'people/charlie-example'. Defaults to config emotional_weight.user_holder, else 'self', when omitted.",
     },
   },
   handler: async (ctx, p) => {

src/core/owner-holder.ts

@@ -0,0 +1,24 @@
+/**
+ * Canonical holder string for "the brain owner," resolved in ONE place so the
+ * calibration / think / doctor / emotional-weight defaults stop disagreeing.
+ *
+ * The default matches the consolidate facts→takes writer
+ * (src/core/cycle/phases/consolidate.ts: holder:'self') and docs/takes-vs-facts.md.
+ * Do NOT introduce a fourth literal — three already exist historically
+ * ('garry', 'system', 'self'); this is the source of truth.
+ *
+ * NORMALIZATION NOTE: the brain owner may also appear under other holder
+ * strings — 'brain' (propose_takes when the author asserts a claim) and
+ * people/<owner> (extraction that names the owner). This resolver only selects
+ * the *default* canonical owner string for reads; it does NOT merge those other
+ * strings. Unifying them is owner-identity entity-resolution, tracked separately
+ * (see garrytan/gbrain#2465). Until then, historical owner takes
+ * under 'brain'/people-<owner> are not folded into the default profile.
+ */
+export const DEFAULT_OWNER_HOLDER = 'self';
+
+export function resolveOwnerHolder(
+  opts: { override?: string | null; configValue?: string | null },
+): string {
+  return opts.override ?? opts.configValue ?? DEFAULT_OWNER_HOLDER;
+}

src/core/pglite-engine.ts

@@ -23,7 +23,6 @@ import { runMigrations } from './migrate.ts';
 import { PGLITE_SCHEMA_SQL, getPGLiteSchema } from './pglite-schema.ts';
 import { DEFAULT_EMBEDDING_MODEL, DEFAULT_EMBEDDING_DIMENSIONS } from './ai/defaults.ts';
 import { DELETE_BATCH_SIZE } from './engine-constants.ts';
-import { referenceExclusionSql } from './reference-flag.ts';
 import { MARKDOWN_CHUNKER_VERSION } from './chunkers/recursive.ts';
 import { acquireLock, releaseLock, type LockHandle } from './pglite-lock.ts';
 import { getFtsLanguage } from './fts-language.ts';
@@ -5203,7 +5202,6 @@ export class PGLiteEngine implements BrainEngine {
     const { rows: [h] } = await this.db.query(`
       WITH entity_pages AS (
         SELECT id, slug FROM pages WHERE type IN ('person', 'company')
-          AND ${referenceExclusionSql()}
       )
       SELECT
         (SELECT count(*) FROM pages) as page_count,

src/core/postgres-engine.ts

@@ -5320,12 +5320,7 @@ export class PostgresEngine implements BrainEngine {
     // is working as intended, not an orphan.
     const [h] = await sql`
       WITH entity_pages AS (
-        -- reference:true pages are exempt from coverage metrics.
-        -- Inlined (postgres.js tagged-template interpolation = bound param,
-        -- not raw SQL); keep in sync with referenceExclusionSql() in
-        -- reference-flag.ts.
         SELECT id, slug FROM pages WHERE type IN ('person', 'company')
-          AND (frontmatter->>'reference') IS DISTINCT FROM 'true'
       )
       SELECT
         (SELECT count(*) FROM pages) as page_count,

src/core/reference-flag.ts

@@ -1,37 +0,0 @@
-// Reference / canon entities.
-//
-// A page with frontmatter `reference: true` is a reference-only entity — a
-// figure or organization imported from a book / article / external source that
-// the user reads ABOUT but does not actively interact with (e.g. Andy Grove,
-// Kleiner Perkins). It keeps its real `type` (`person` / `company`), so it stays
-// fully searchable, enrichable, linkable, and edge-resolvable — NOTHING about
-// retrieval changes.
-//
-// The ONLY behavior it opts out of is the entity *coverage* metrics
-// (`timeline_coverage`, `entity_link_coverage` + their onboard-nudge mirrors).
-// Those metrics nudge "this entity should accumulate dated history / inbound
-// links"; that assumption is right for people you actually deal with and wrong
-// for canon imports, which have no dated events in the user's life. Excluding
-// them keeps the metric honest and actionable instead of permanently red.
-//
-// Opt-in: absent / false / anything-but-true = normal entity (the default).
-// Set via `gbrain reference <slug>` (or hand-edit frontmatter).
-
-export const REFERENCE_FRONTMATTER_KEY = 'reference';
-
-/**
- * SQL predicate (true for NON-reference pages) to AND into entity-coverage
- * denominators AND numerators so the ratio stays consistent. JSONB `->>` yields
- * text; `IS DISTINCT FROM 'true'` treats absent (NULL) and every non-true value
- * as a normal counted entity. Backed by the GIN index on `pages.frontmatter`.
- *
- * @param alias optional table alias (e.g. 'p' for `pages p`); omit for bare `pages`.
- *
- * NOTE: postgres-engine.ts uses a postgres.js tagged template where `${}` is a
- * bound parameter, not raw SQL, so it inlines this predicate literally — keep
- * the two in sync.
- */
-export function referenceExclusionSql(alias = ''): string {
-  const col = alias ? `${alias}.frontmatter` : 'frontmatter';
-  return `(${col}->>'${REFERENCE_FRONTMATTER_KEY}') IS DISTINCT FROM 'true'`;
-}

src/core/think/index.ts

@@ -23,6 +23,7 @@ import { runGather, renderPagesBlock, takesHitToTakeForPrompt } from './gather.t
 import { renderTakesBlock } from './sanitize.ts';
 import { buildThinkSystemPrompt, buildThinkUserMessage } from './prompt.ts';
 import { resolveCitations, type ParsedCitation } from './cite-render.ts';
+import { resolveOwnerHolder } from '../owner-holder.ts';
 import { resolveModel } from '../model-config.ts';
 import { chat as gatewayChat, probeChatModel, type ChatResult } from '../ai/gateway.ts';
 import { AIConfigError } from '../ai/errors.ts';
@@ -76,8 +77,8 @@ export interface RunThinkOpts {
    */
   withCalibration?: boolean;
   /**
-   * Holder to retrieve the calibration profile for. Default 'garry'. Only
-   * consulted when withCalibration=true.
+   * Holder to retrieve the calibration profile for. Resolves via resolveOwnerHolder
+   * (config emotional_weight.user_holder, else 'self'). Only consulted when withCalibration=true.
    */
   calibrationHolder?: string;
   /**
@@ -308,7 +309,10 @@ export async function runThink(
     try {
       const { getLatestProfile } = await import('../../commands/calibration.ts');
       const profile = await getLatestProfile(engine, {
-        holder: opts.calibrationHolder ?? 'garry',
+        holder: resolveOwnerHolder({
+          override: opts.calibrationHolder,
+          configValue: await engine.getConfig('emotional_weight.user_holder'),
+        }),
       });
       if (profile) {
         calibrationBlockOpts = {

test/calibration-cli.test.ts

@@ -27,6 +27,12 @@ function buildMockEngine(opts: { rows: CalibrationProfileRow[] }): {
   const capturedParams: unknown[][] = [];
   const engine = {
     kind: 'pglite',
+    // #2464: getCalibrationProfileOp resolves the owner holder via
+    // resolveOwnerHolder(config emotional_weight.user_holder, else 'self'), so the
+    // mock must implement getConfig. null = key unset → resolver falls back to 'self'.
+    async getConfig(): Promise<string | null> {
+      return null;
+    },
     async executeRaw<T>(sql: string, params?: unknown[]): Promise<T[]> {
       capturedSql.push(sql);
       capturedParams.push(params ?? []);
@@ -211,17 +217,17 @@ describe('formatProfileText', () => {
 // ─── getCalibrationProfileOp ────────────────────────────────────────
 
 describe('getCalibrationProfileOp (MCP)', () => {
-  test('defaults holder to "garry" when omitted', async () => {
-    const { engine } = buildMockEngine({ rows: [buildProfile({ holder: 'garry' })] });
+  test('defaults holder to "self" when omitted (config emotional_weight.user_holder unset)', async () => {
+    const { engine } = buildMockEngine({ rows: [buildProfile({ holder: 'self' })] });
     const ctx = buildCtx(engine);
     const result = await getCalibrationProfileOp(ctx, {});
-    expect(result?.holder).toBe('garry');
+    expect(result?.holder).toBe('self');
   });
 
   test('routes through sourceScopeOpts: scalar source-bound client gets source-scoped result', async () => {
     const rows = [
-      buildProfile({ holder: 'garry', source_id: 'default' }),
-      buildProfile({ holder: 'garry', source_id: 'tenant-b' }),
+      buildProfile({ holder: 'self', source_id: 'default' }),
+      buildProfile({ holder: 'self', source_id: 'tenant-b' }),
     ];
     const { engine } = buildMockEngine({ rows });
     const ctx = buildCtx(engine, { sourceId: 'tenant-b' });
@@ -231,8 +237,8 @@ describe('getCalibrationProfileOp (MCP)', () => {
 
   test('federated read scope sees the union of allowed sources', async () => {
     const rows = [
-      buildProfile({ holder: 'garry', source_id: 'tenant-a' }),
-      buildProfile({ holder: 'garry', source_id: 'tenant-z' }),
+      buildProfile({ holder: 'self', source_id: 'tenant-a' }),
+      buildProfile({ holder: 'self', source_id: 'tenant-z' }),
     ];
     const { engine } = buildMockEngine({ rows });
     const ctx = buildCtx(engine, { allowedSources: ['tenant-a', 'tenant-b'] });

test/calibration-profile.test.ts

@@ -32,7 +32,7 @@ interface CapturedSql {
   params: unknown[];
 }
 
-function buildMockEngine(opts: { scorecard: TakesScorecard }): {
+function buildMockEngine(opts: { scorecard: TakesScorecard; userHolder?: string | null }): {
   engine: BrainEngine;
   captured: CapturedSql[];
 } {
@@ -42,6 +42,10 @@ function buildMockEngine(opts: { scorecard: TakesScorecard }): {
     async getScorecard() {
       return opts.scorecard;
     },
+    async getConfig(key: string): Promise<string | null> {
+      if (key === 'emotional_weight.user_holder') return opts.userHolder ?? null;
+      return null;
+    },
     async executeRaw<T>(sql: string, params?: unknown[]): Promise<T[]> {
       captured.push({ sql, params: params ?? [] });
       return [];
@@ -234,7 +238,7 @@ describe('runPhaseCalibrationProfile — phase integration', () => {
     // grade_completion, domain_scorecards_json, patterns[], voice_passed, voice_attempts,
     // bias_tags[], model_id
     expect(insert!.params[0]).toBe('default'); // source_id
-    expect(insert!.params[1]).toBe('garry'); // holder
+    expect(insert!.params[1]).toBe('self'); // holder (resolved via resolveOwnerHolder, no override)
     expect(insert!.params[2]).toBe(12); // total_resolved
     expect(insert!.params[9]).toBe(true); // voice_gate_passed
     expect(insert!.params[10]).toBe(1); // voice_gate_attempts
@@ -330,4 +334,24 @@ describe('runPhaseCalibrationProfile — phase integration', () => {
     const insert = captured.find(c => c.sql.includes('INSERT INTO calibration_profiles'));
     expect(insert!.params[0]).toBe('tenant-b');
   });
+
+  test('cold-brain summary uses resolved owner holder self when user_holder unset', async () => {
+    const { engine } = buildMockEngine({
+      scorecard: { total_bets: 0, resolved: 0, correct: 0, incorrect: 0, partial: 0,
+        accuracy: null, brier: null, partial_rate: null, unresolvable_count: 0, unresolvable_rate: null },
+    });
+    const result = await runPhaseCalibrationProfile(buildCtx(engine), {});
+    expect(result.summary).toContain('holder=self');
+    expect(result.summary).not.toContain('holder=garry');
+  });
+
+  test('configured user_holder overrides the default in the cold-brain summary', async () => {
+    const { engine } = buildMockEngine({
+      scorecard: { total_bets: 0, resolved: 0, correct: 0, incorrect: 0, partial: 0,
+        accuracy: null, brier: null, partial_rate: null, unresolvable_count: 0, unresolvable_rate: null },
+      userHolder: 'people/charlie-example',
+    });
+    const result = await runPhaseCalibrationProfile(buildCtx(engine), {});
+    expect(result.summary).toContain('holder=people/charlie-example');
+  });
 });

test/doctor-calibration-checks.test.ts

@@ -32,6 +32,12 @@ function buildMockEngine(opts: {
 }): BrainEngine {
   return {
     kind: 'pglite',
+    // #2464: checkCalibrationFreshness resolves the owner holder via
+    // resolveOwnerHolder(config emotional_weight.user_holder, else 'self'), so the
+    // mock must implement getConfig. null = key unset → resolver falls back to 'self'.
+    async getConfig(): Promise<string | null> {
+      return null;
+    },
     async executeRaw<T>(sql: string): Promise<T[]> {
       if (opts.throwOn && opts.throwOn.test(sql)) {
         throw new Error('mock engine error: ' + sql.slice(0, 50));

test/emotional-weight.test.ts

@@ -112,3 +112,7 @@ describe('computeEmotionalWeight', () => {
     expect(HIGH_EMOTION_TAGS.has('mental-health')).toBe(true);
   });
 });
+
+test('DEFAULT_USER_HOLDER is the canonical owner holder self', () => {
+  expect(DEFAULT_USER_HOLDER).toBe('self');
+});

test/owner-holder.test.ts

@@ -0,0 +1,27 @@
+import { describe, test, expect } from 'bun:test';
+import { resolveOwnerHolder, DEFAULT_OWNER_HOLDER } from '../src/core/owner-holder.ts';
+
+describe('owner-holder', () => {
+  test('DEFAULT_OWNER_HOLDER is self', () => {
+    expect(DEFAULT_OWNER_HOLDER).toBe('self');
+  });
+
+  test('defaults to self when nothing provided', () => {
+    expect(resolveOwnerHolder({})).toBe('self');
+  });
+
+  test('null/undefined config falls back to self', () => {
+    expect(resolveOwnerHolder({ configValue: null })).toBe('self');
+    expect(resolveOwnerHolder({ configValue: undefined })).toBe('self');
+  });
+
+  test('uses config value when set and no override', () => {
+    expect(resolveOwnerHolder({ configValue: 'people/charlie-example' }))
+      .toBe('people/charlie-example');
+  });
+
+  test('override beats config and default', () => {
+    expect(resolveOwnerHolder({ override: 'world', configValue: 'people/charlie-example' }))
+      .toBe('world');
+  });
+});

test/reference-flag.test.ts

@@ -1,154 +0,0 @@
-import { describe, expect, test } from 'bun:test';
-import { referenceExclusionSql, REFERENCE_FRONTMATTER_KEY } from '../src/core/reference-flag.ts';
-import { applyReferenceFrontmatter } from '../src/commands/reference.ts';
-
-describe('referenceExclusionSql', () => {
-  test('bare pages (no alias)', () => {
-    expect(referenceExclusionSql()).toBe(`(frontmatter->>'reference') IS DISTINCT FROM 'true'`);
-  });
-  test('aliased', () => {
-    expect(referenceExclusionSql('p')).toBe(`(p.frontmatter->>'reference') IS DISTINCT FROM 'true'`);
-  });
-  test('key constant', () => {
-    expect(REFERENCE_FRONTMATTER_KEY).toBe('reference');
-  });
-});
-
-describe('applyReferenceFrontmatter', () => {
-  const page = `---\ntitle: Andy Grove\ntype: person\ntags: []\n---\n\n# Andy Grove\n\nBody.`;
-
-  test('adds reference: true to an existing frontmatter block', () => {
-    const out = applyReferenceFrontmatter(page, true);
-    expect(out).toContain('reference: true');
-    expect(out).toContain('type: person');   // other keys preserved
-    expect(out).toContain('# Andy Grove');    // body preserved
-  });
-
-  test('is idempotent — does not duplicate the key', () => {
-    const once = applyReferenceFrontmatter(page, true);
-    const twice = applyReferenceFrontmatter(once, true);
-    expect(twice).toBe(once);
-    expect(twice.match(/reference: true/g)).toHaveLength(1);
-  });
-
-  test('replaces a stale reference: false with true', () => {
-    const off = `---\ntype: person\nreference: false\n---\n\nBody.`;
-    const out = applyReferenceFrontmatter(off, true);
-    expect(out).toContain('reference: true');
-    expect(out).not.toContain('reference: false');
-  });
-
-  test('--unset removes the key', () => {
-    const on = applyReferenceFrontmatter(page, true);
-    const off = applyReferenceFrontmatter(on, false);
-    expect(off).not.toContain('reference:');
-    expect(off).toContain('type: person');
-  });
-
-  test('--unset on a page without the key is a no-op', () => {
-    expect(applyReferenceFrontmatter(page, false)).toBe(page);
-  });
-
-  test('setting on a frontmatter-less page prepends a block', () => {
-    const raw = '# Just a heading\n\nNo frontmatter here.';
-    const out = applyReferenceFrontmatter(raw, true);
-    expect(out.startsWith('---\nreference: true\n---\n')).toBe(true);
-    expect(out).toContain('# Just a heading');
-  });
-
-  test('preserves body containing YAML-special chars', () => {
-    const tricky = `---\ntype: person\n---\n\nText with $& and $1 literals.`;
-    const out = applyReferenceFrontmatter(tricky, true);
-    expect(out).toContain('Text with $& and $1 literals.');
-    expect(out).toContain('reference: true');
-  });
-});
-
-// ── e2e: getHealth exemption + (source_id, slug)-scoped JSONB write ─────────
-
-import { afterAll, beforeAll } from 'bun:test';
-import * as fs from 'node:fs';
-import * as os from 'node:os';
-import * as path from 'node:path';
-import { PGLiteEngine } from '../src/core/pglite-engine.ts';
-import { runReference } from '../src/commands/reference.ts';
-import { withEnv } from './helpers/with-env.ts';
-
-describe('reference flag e2e (PGLite)', () => {
-  let engine: PGLiteEngine;
-  let brainDir: string;
-
-  beforeAll(async () => {
-    engine = new PGLiteEngine();
-    await engine.connect({ database_url: '' });
-    await engine.initSchema();
-
-    brainDir = fs.mkdtempSync(path.join(os.tmpdir(), 'gbrain-ref-'));
-    fs.mkdirSync(path.join(brainDir, 'people'), { recursive: true });
-    fs.writeFileSync(
-      path.join(brainDir, 'people/andy-grove.md'),
-      '---\ntitle: Andy Grove\ntype: person\n---\n\n# Andy Grove\n',
-      'utf8',
-    );
-
-    await engine.executeRaw(
-      `INSERT INTO sources (id, name, local_path, config, created_at)
-       VALUES ('src-a', 'a', $1, '{}'::jsonb, now()), ('src-b', 'b', NULL, '{}'::jsonb, now())`,
-      [brainDir],
-    );
-    // Same slug in BOTH sources — the write must only touch src-a.
-    await engine.putPage('people/andy-grove', {
-      type: 'person', title: 'Andy Grove', compiled_truth: 'canon figure',
-    }, { sourceId: 'src-a' });
-    await engine.putPage('people/andy-grove', {
-      type: 'person', title: 'Andy Grove', compiled_truth: 'other-source twin',
-    }, { sourceId: 'src-b' });
-    // A normal contact WITH a timeline entry, so coverage has a live numerator.
-    const contact = await engine.putPage('people/alice-example', {
-      type: 'person', title: 'Alice Example', compiled_truth: 'real contact',
-    }, { sourceId: 'src-a' });
-    await engine.executeRaw(
-      `INSERT INTO timeline_entries (page_id, date, summary) VALUES ($1, '2026-01-01', 'met')`,
-      [contact.id],
-    );
-  });
-
-  afterAll(async () => {
-    await engine.disconnect();
-    fs.rmSync(brainDir, { recursive: true, force: true });
-  });
-
-  test('runReference scopes the JSONB write to the resolved (source_id, slug)', async () => {
-    await withEnv({ GBRAIN_SOURCE: undefined }, () =>
-      runReference(engine, ['people/andy-grove', '--brain', brainDir]));
-
-    const rows = await engine.executeRaw<{ source_id: string; ref: string | null }>(
-      `SELECT source_id, frontmatter->>'reference' AS ref FROM pages WHERE slug = 'people/andy-grove' ORDER BY source_id`,
-    );
-    expect(rows).toEqual([
-      { source_id: 'src-a', ref: 'true' },
-      { source_id: 'src-b', ref: null },   // twin in the other source untouched
-    ]);
-    // Durable half: frontmatter on disk got the flag too.
-    expect(fs.readFileSync(path.join(brainDir, 'people/andy-grove.md'), 'utf8'))
-      .toContain('reference: true');
-  });
-
-  test('getHealth exempts reference pages from timeline/link coverage', async () => {
-    const health = await engine.getHealth();
-    // 3 person pages; the 2 reference-less twins would drag coverage to 1/3.
-    // With the src-a twin marked reference, denominator = 2 (alice + src-b twin).
-    expect(health.timeline_coverage).toBeCloseTo(0.5);
-  });
-
-  test('unset restores the page to a normal counted entity', async () => {
-    await withEnv({ GBRAIN_SOURCE: undefined }, () =>
-      runReference(engine, ['people/andy-grove', '--unset', '--brain', brainDir]));
-    const rows = await engine.executeRaw<{ ref: string | null }>(
-      `SELECT frontmatter->>'reference' AS ref FROM pages WHERE slug = 'people/andy-grove' AND source_id = 'src-a'`,
-    );
-    expect(rows[0].ref).toBeNull();
-    const health = await engine.getHealth();
-    expect(health.timeline_coverage).toBeCloseTo(1 / 3);
-  });
-});