fix(admin): regenerate admin-embedded manifest for rebuilt SPA bundle

The Sources-tab rebuild replaced admin/dist/assets/index-CoGEje3-.js with index-BpDk4NI4.js but src/admin-embedded.ts (generated by scripts/build-admin-embedded.ts) still imported the deleted file, so 'gbrain serve --http' crashed on startup (Cannot find module) and all 4 admin-embed E2E serial tests failed with 'never became ready'. Regenerated via: bun run scripts/build-admin-embedded.ts Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
feat(admin): Sources tab + federation management UI
2026-08-15 17:32:37 +00:00 · 2026-07-22 11:01:15 -07:00 · 2026-07-21 14:33:21 -07:00 · 2026-07-21 14:28:25 -07:00
28 changed files with 1880 additions and 501 deletions
@@ -7,7 +7,7 @@
  <link rel="preconnect" href="https://fonts.googleapis.com" />
  <link rel="preconnect" href="https://fonts.gstatic.com" crossorigin />
  <link href="https://fonts.googleapis.com/css2?family=Inter:wght@400;500;600&family=JetBrains+Mono:wght@400;500&display=swap" rel="stylesheet" />
-  <script type="module" crossorigin src="/admin/assets/index-CoGEje3-.js"></script>
+  <script type="module" crossorigin src="/admin/assets/index-BpDk4NI4.js"></script>
  <link rel="stylesheet" crossorigin href="/admin/assets/index-GxkWX7v3.css">
 </head>
 <body>
@@ -5,13 +5,14 @@ import { AgentsPage } from './pages/Agents';
 import { RequestLogPage } from './pages/RequestLog';
 import { CalibrationPage } from './pages/Calibration';
 import { JobsWatchPage } from './pages/JobsWatch';
+import { SourcesPage } from './pages/Sources';
 import { api } from './api';

-type Page = 'login' | 'dashboard' | 'agents' | 'log' | 'calibration' | 'jobs';
+type Page = 'login' | 'dashboard' | 'agents' | 'sources' | 'log' | 'calibration' | 'jobs';

 function getPage(): Page {
  const hash = window.location.hash.replace('#', '') || 'dashboard';
-  if (['login', 'dashboard', 'agents', 'log', 'calibration', 'jobs'].includes(hash)) return hash as Page;
+  if (['login', 'dashboard', 'agents', 'sources', 'log', 'calibration', 'jobs'].includes(hash)) return hash as Page;
  return 'dashboard';
 }

@@ -54,6 +55,8 @@ export function App() {
             onClick={() => navigate('dashboard')}>Dashboard</a>
          <a className={`nav-item ${page === 'agents' ? 'active' : ''}`}
             onClick={() => navigate('agents')}>Agents</a>
+          <a className={`nav-item ${page === 'sources' ? 'active' : ''}`}
+             onClick={() => navigate('sources')}>Sources</a>
          <a className={`nav-item ${page === 'log' ? 'active' : ''}`}
             onClick={() => navigate('log')}>Request Log</a>
          <a className={`nav-item ${page === 'calibration' ? 'active' : ''}`}
@@ -83,6 +86,7 @@ export function App() {
      <main className="main">
        {page === 'dashboard' && <DashboardPage />}
        {page === 'agents' && <AgentsPage />}
+        {page === 'sources' && <SourcesPage />}
        {page === 'log' && <RequestLogPage />}
        {page === 'calibration' && <CalibrationPage />}
        {page === 'jobs' && <JobsWatchPage />}
@@ -52,4 +52,22 @@ export const api = {
    apiFetchText(`/admin/api/calibration/charts/${encodeURIComponent(type)}${holder ? `?holder=${encodeURIComponent(holder)}` : ''}`),
  // v0.41 D2 — live minion-jobs dashboard snapshot.
  jobsWatch: () => apiFetch('/admin/api/jobs/watch'),
+  // v0.41.29 Sources tab + federated-read management
+  sources: () => apiFetch('/admin/api/sources'),
+  agentsFederatedRead: () => apiFetch('/admin/api/agents/federated-read'),
+  grantRead: (clientId: string, sourceId: string) =>
+    apiFetch(`/admin/api/agents/${encodeURIComponent(clientId)}/grant-read`, {
+      method: 'POST',
+      body: JSON.stringify({ source_id: sourceId }),
+    }),
+  revokeRead: (clientId: string, sourceId: string) =>
+    apiFetch(`/admin/api/agents/${encodeURIComponent(clientId)}/revoke-read`, {
+      method: 'POST',
+      body: JSON.stringify({ source_id: sourceId }),
+    }),
+  setFederatedRead: (clientId: string, sourceIds: string[]) =>
+    apiFetch(`/admin/api/agents/${encodeURIComponent(clientId)}/set-federated-read`, {
+      method: 'POST',
+      body: JSON.stringify({ source_ids: sourceIds }),
+    }),
 };
@@ -381,8 +381,16 @@ function CredentialsModal({ credentials, onClose }: {
  );
 }

+interface FederationState {
+  source_id: string | null;
+  federated_read: string[];
+}
+
 function AgentDrawer({ agent, onClose, onRevoked }: { agent: Agent; onClose: () => void; onRevoked: () => void }) {
  const [tab, setTab] = useState<'claude-code' | 'chatgpt' | 'claude-cowork' | 'perplexity' | 'cursor' | 'json'>('claude-code');
+  const [federation, setFederation] = useState<FederationState | null>(null);
+  const [allSources, setAllSources] = useState<string[]>([]);
+  const [showFederation, setShowFederation] = useState(false);
  const copy = (text: string) => navigator.clipboard.writeText(text);
  const serverUrl = window.location.origin;

@@ -390,6 +398,30 @@ function AgentDrawer({ agent, onClose, onRevoked }: { agent: Agent; onClose: ()
  const isOAuth = agent.auth_type === 'oauth';
  const agentName = agent.name || agent.client_name || 'unknown';

+  // Lazy-load federation state when the drawer opens for an OAuth client.
+  // The /admin/api/agents endpoint doesn't carry source_id / federated_read,
+  // so we fetch /admin/api/agents/federated-read separately and pair by id.
+  useEffect(() => {
+    if (!isOAuth || !cid) return;
+    let cancelled = false;
+    Promise.all([
+      api.agentsFederatedRead().catch(() => ({ clients: [] })),
+      api.sources().catch(() => ({ sources: [] })),
+    ]).then(([feds, srcs]: any) => {
+      if (cancelled) return;
+      const me = (feds.clients || []).find((c: any) => c.client_id === cid);
+      setFederation(me ? { source_id: me.source_id, federated_read: me.federated_read || [] } : null);
+      setAllSources((srcs.sources || []).map((s: any) => s.source_id));
+    });
+    return () => { cancelled = true; };
+  }, [cid, isOAuth]);
+
+  const reloadFederation = async () => {
+    const feds: any = await api.agentsFederatedRead().catch(() => ({ clients: [] }));
+    const me = (feds.clients || []).find((c: any) => c.client_id === cid);
+    setFederation(me ? { source_id: me.source_id, federated_read: me.federated_read || [] } : null);
+  };
+
  // For API keys, we can't show the actual token (it was shown once at creation).
  // For OAuth, we show the client_id and tell them to use their secret.

@@ -553,6 +585,34 @@ function AgentDrawer({ agent, onClose, onRevoked }: { agent: Agent; onClose: ()
          <span>{agent.token_ttl ? (agent.token_ttl >= 31536000 ? 'No expiry' : agent.token_ttl >= 86400 ? `${Math.floor(agent.token_ttl / 86400)}d` : agent.token_ttl >= 3600 ? `${Math.floor(agent.token_ttl / 3600)}h` : `${agent.token_ttl}s`) : '1h (default)'}</span>
        </div>

+        {isOAuth && federation && (
+          <>
+            <div className="section-title" style={{ display: 'flex', alignItems: 'center', justifyContent: 'space-between' }}>
+              <span>Federation</span>
+              <button
+                className="btn btn-secondary"
+                style={{ padding: '4px 10px', fontSize: 12 }}
+                onClick={() => setShowFederation(true)}
+              >
+                Manage reads
+              </button>
+            </div>
+            <div style={{ display: 'grid', gridTemplateColumns: '120px 1fr', gap: '6px 12px', fontSize: 13 }}>
+              <span style={{ color: 'var(--text-secondary)' }}>Write source</span>
+              <span className="mono">{federation.source_id || '(none)'}</span>
+              <span style={{ color: 'var(--text-secondary)' }}>Federated reads</span>
+              <span style={{ fontSize: 12 }}>
+                {federation.federated_read.length === 0
+                  ? <span style={{ color: 'var(--text-muted)' }}>(empty — no federated reads)</span>
+                  : federation.federated_read.map((s) => (
+                      <span key={s} className="badge badge-read" style={{ marginRight: 4, marginBottom: 2 }}>{s}</span>
+                    ))
+                }
+              </span>
+            </div>
+          </>
+        )}
+
        {/*
          Config Export visible for both auth_type=oauth AND auth_type=api_key.
          Claude Code + Cursor + JSON tabs render real snippets regardless
@@ -628,6 +688,142 @@ function AgentDrawer({ agent, onClose, onRevoked }: { agent: Agent; onClose: ()
          )}
        </div>
      </div>
+
+      {showFederation && federation && (
+        <FederationModal
+          clientId={cid}
+          clientName={agentName}
+          allSources={allSources}
+          currentReads={federation.federated_read}
+          writeSource={federation.source_id}
+          onClose={() => setShowFederation(false)}
+          onSaved={async () => {
+            await reloadFederation();
+            setShowFederation(false);
+          }}
+        />
+      )}
    </>
  );
 }
+
+/**
+ * FederationModal — admin counterpart of `gbrain auth set-federated-read`.
+ * Source checkbox list; "Save" submits the full new list via the
+ * race-safe atomic SQL path in setFederatedReadCore. Per the CLI's
+ * documented contract, this is wholesale-replace semantics — concurrent
+ * grant/revoke from a CLI operator would be last-writer-wins against
+ * a Save here.
+ */
+function FederationModal({
+  clientId, clientName, allSources, currentReads, writeSource, onClose, onSaved,
+}: {
+  clientId: string;
+  clientName: string;
+  allSources: string[];
+  currentReads: string[];
+  writeSource: string | null;
+  onClose: () => void;
+  onSaved: () => Promise<void> | void;
+}) {
+  const [selected, setSelected] = useState<Set<string>>(new Set(currentReads));
+  const [saving, setSaving] = useState(false);
+  const [error, setError] = useState<string | null>(null);
+
+  const toggle = (id: string) => {
+    const next = new Set(selected);
+    if (next.has(id)) next.delete(id); else next.add(id);
+    setSelected(next);
+  };
+
+  const handleSave = async () => {
+    setSaving(true);
+    setError(null);
+    try {
+      await api.setFederatedRead(clientId, Array.from(selected));
+      await onSaved();
+    } catch (e: any) {
+      setError(e.message || 'save failed');
+      setSaving(false);
+    }
+  };
+
+  // Union: all known sources + any current reads not in the source list
+  // (e.g. orphan entries from before the source was deleted). The latter
+  // surface as "(missing source)" so operators can revoke them.
+  const allKnown = new Set([...allSources, ...currentReads]);
+  const ordered = Array.from(allKnown).sort();
+
+  return (
+    <div className="modal-overlay" onClick={onClose}>
+      <div className="modal" onClick={(e) => e.stopPropagation()} style={{ maxWidth: 520 }}>
+        <div className="modal-header">
+          <div style={{ fontSize: 16, fontWeight: 600 }}>Manage federated reads</div>
+          <div style={{ fontSize: 13, color: 'var(--text-secondary)', marginTop: 4 }}>
+            <strong>{clientName}</strong> — pick which sources this client can read in addition to its
+            {writeSource ? <> write source <code className="mono">{writeSource}</code></> : <> write source</>}.
+          </div>
+        </div>
+        <div className="modal-body" style={{ maxHeight: '50vh', overflowY: 'auto' }}>
+          {ordered.length === 0 && (
+            <div style={{ color: 'var(--text-muted)', fontSize: 13 }}>
+              No sources registered. Use <code>gbrain sources add &lt;id&gt; --path &lt;dir&gt;</code> from the CLI first.
+            </div>
+          )}
+          {ordered.map((id) => {
+            const isOrphan = !allSources.includes(id);
+            const isWriteSource = id === writeSource;
+            return (
+              <label
+                key={id}
+                style={{
+                  display: 'flex',
+                  alignItems: 'center',
+                  gap: 10,
+                  padding: '8px 10px',
+                  borderBottom: '1px solid var(--border)',
+                  cursor: 'pointer',
+                  fontSize: 13,
+                }}
+              >
+                <input
+                  type="checkbox"
+                  checked={selected.has(id)}
+                  onChange={() => toggle(id)}
+                  style={{ width: 16, height: 16, margin: 0, flexShrink: 0, cursor: 'pointer' }}
+                />
+                <span className="mono" style={{ flex: 1, minWidth: 0, overflow: 'hidden', textOverflow: 'ellipsis', whiteSpace: 'nowrap' }}>{id}</span>
+                {isWriteSource && <span className="badge badge-write" style={{ fontSize: 10, flexShrink: 0 }}>write source</span>}
+                {isOrphan && <span className="badge badge-danger" style={{ fontSize: 10, flexShrink: 0 }}>missing source</span>}
+              </label>
+            );
+          })}
+        </div>
+        {error && (
+          <div style={{
+            background: 'rgba(239,68,68,0.08)',
+            border: '1px solid rgba(239,68,68,0.3)',
+            color: '#ef4444',
+            padding: '10px 12px',
+            borderRadius: 6,
+            margin: '12px 0',
+            fontSize: 12,
+          }}>
+            {error}
+          </div>
+        )}
+        <div className="modal-footer">
+          <button type="button" className="btn btn-secondary" onClick={onClose} disabled={saving}>Cancel</button>
+          <button
+            type="button"
+            className="btn btn-primary"
+            onClick={handleSave}
+            disabled={saving}
+          >
+            {saving ? 'Saving…' : `Save (${selected.size} source${selected.size === 1 ? '' : 's'})`}
+          </button>
+        </div>
+      </div>
+    </div>
+  );
+}
@@ -0,0 +1,195 @@
+import React, { useState, useEffect } from 'react';
+import { api } from '../api';
+
+interface SourceRow {
+  source_id: string;
+  name: string;
+  local_path: string | null;
+  sync_enabled: boolean;
+  last_sync_at: string | null;
+  staleness_hours: number | null;
+  staleness_class: 'fresh' | 'stale' | 'severe' | 'unknown';
+  last_commit: string | null;
+  pages: number;
+  chunks_total: number;
+  chunks_unembedded: number;
+  embedding_coverage_pct: number;
+}
+
+interface FederatedClient {
+  client_id: string;
+  client_name: string;
+  source_id: string | null;
+  federated_read: string[];
+}
+
+function timeAgo(iso: string | null): string {
+  if (!iso) return 'never';
+  const s = Math.floor((Date.now() - new Date(iso).getTime()) / 1000);
+  if (s < 0) return 'in the future?';
+  if (s < 60) return 'just now';
+  if (s < 3600) return `${Math.floor(s / 60)}m ago`;
+  if (s < 86400) return `${Math.floor(s / 3600)}h ago`;
+  return `${Math.floor(s / 86400)}d ago`;
+}
+
+function stalenessColor(cls: string): string {
+  switch (cls) {
+    case 'fresh': return '#4ade80';
+    case 'stale': return '#fbbf24';
+    case 'severe': return '#ef4444';
+    default: return 'var(--text-muted)';
+  }
+}
+
+function coverageColor(pct: number): string {
+  if (pct >= 99) return '#4ade80';
+  if (pct >= 90) return '#fbbf24';
+  return '#ef4444';
+}
+
+export function SourcesPage() {
+  const [sources, setSources] = useState<SourceRow[]>([]);
+  const [clients, setClients] = useState<FederatedClient[]>([]);
+  const [loading, setLoading] = useState(true);
+  const [error, setError] = useState<string | null>(null);
+
+  const load = async () => {
+    setLoading(true);
+    setError(null);
+    try {
+      const [srcReport, clientsResp] = await Promise.all([
+        api.sources(),
+        api.agentsFederatedRead(),
+      ]);
+      setSources(srcReport.sources || []);
+      setClients(clientsResp.clients || []);
+    } catch (e: any) {
+      setError(e.message || 'load failed');
+    } finally {
+      setLoading(false);
+    }
+  };
+
+  useEffect(() => { load(); }, []);
+
+  // Reverse-lookup: for each source, which clients can read it?
+  const readersBySource = (sourceId: string): string[] =>
+    clients.filter((c) => c.federated_read.includes(sourceId)).map((c) => c.client_name);
+
+  // Reverse-lookup: which clients WRITE to this source (source_id == sourceId)?
+  const writersBySource = (sourceId: string): string[] =>
+    clients.filter((c) => c.source_id === sourceId).map((c) => c.client_name);
+
+  return (
+    <div style={{ padding: 24, maxWidth: 1200 }}>
+      <div style={{ display: 'flex', alignItems: 'center', justifyContent: 'space-between', marginBottom: 24 }}>
+        <h1 style={{ fontSize: 24, margin: 0 }}>Sources</h1>
+        <button
+          onClick={load}
+          style={{
+            background: 'transparent',
+            border: '1px solid var(--border)',
+            color: 'var(--text-secondary)',
+            padding: '6px 12px',
+            borderRadius: 6,
+            fontSize: 12,
+            cursor: 'pointer',
+          }}
+        >
+          Refresh
+        </button>
+      </div>
+
+      {loading && <div style={{ color: 'var(--text-muted)' }}>Loading…</div>}
+      {error && (
+        <div style={{
+          background: 'rgba(239,68,68,0.08)',
+          border: '1px solid rgba(239,68,68,0.3)',
+          color: '#ef4444',
+          padding: 12,
+          borderRadius: 6,
+          marginBottom: 16,
+          fontSize: 13,
+        }}>
+          Failed to load sources: {error}
+        </div>
+      )}
+
+      {!loading && !error && sources.length === 0 && (
+        <div style={{ color: 'var(--text-muted)', padding: 16 }}>
+          No active sources with a local_path. Use{' '}
+          <code style={{ background: 'var(--bg-elevated)', padding: '2px 6px', borderRadius: 4 }}>
+            gbrain sources add &lt;id&gt; --path &lt;dir&gt;
+          </code>{' '}
+          to register one.
+        </div>
+      )}
+
+      {!loading && !error && sources.length > 0 && (
+        <div style={{ overflowX: 'auto' }}>
+          <table style={{ width: '100%', borderCollapse: 'collapse', fontSize: 13 }}>
+            <thead>
+              <tr style={{ borderBottom: '1px solid var(--border)', textAlign: 'left', color: 'var(--text-muted)' }}>
+                <th style={{ padding: '10px 12px' }}>ID</th>
+                <th style={{ padding: '10px 12px', textAlign: 'right' }}>Pages</th>
+                <th style={{ padding: '10px 12px', textAlign: 'right' }}>Chunks</th>
+                <th style={{ padding: '10px 12px', textAlign: 'right' }}>Embed%</th>
+                <th style={{ padding: '10px 12px' }}>Last Sync</th>
+                <th style={{ padding: '10px 12px' }}>Writers</th>
+                <th style={{ padding: '10px 12px' }}>Readers (federated)</th>
+              </tr>
+            </thead>
+            <tbody>
+              {sources.map((s) => {
+                const readers = readersBySource(s.source_id);
+                const writers = writersBySource(s.source_id);
+                return (
+                  <tr key={s.source_id} style={{ borderBottom: '1px solid var(--border)' }}>
+                    <td style={{ padding: '10px 12px', fontFamily: 'JetBrains Mono, monospace' }}>
+                      <div>{s.source_id}</div>
+                      {s.name !== s.source_id && (
+                        <div style={{ fontSize: 11, color: 'var(--text-muted)', fontFamily: 'inherit' }}>{s.name}</div>
+                      )}
+                    </td>
+                    <td style={{ padding: '10px 12px', textAlign: 'right', fontFamily: 'JetBrains Mono, monospace' }}>{s.pages.toLocaleString()}</td>
+                    <td style={{ padding: '10px 12px', textAlign: 'right', fontFamily: 'JetBrains Mono, monospace' }}>{s.chunks_total.toLocaleString()}</td>
+                    <td style={{ padding: '10px 12px', textAlign: 'right', color: coverageColor(s.embedding_coverage_pct), fontFamily: 'JetBrains Mono, monospace' }}>
+                      {s.embedding_coverage_pct.toFixed(0)}%
+                    </td>
+                    <td style={{ padding: '10px 12px', color: s.local_path == null ? 'var(--text-muted)' : stalenessColor(s.staleness_class) }}>
+                      {s.local_path == null ? 'push-only' : timeAgo(s.last_sync_at)}
+                    </td>
+                    <td style={{ padding: '10px 12px', fontSize: 12, color: 'var(--text-secondary)' }}>
+                      {writers.length === 0 ? <span style={{ color: 'var(--text-muted)' }}>none</span> : writers.join(', ')}
+                    </td>
+                    <td style={{ padding: '10px 12px', fontSize: 12, color: 'var(--text-secondary)' }}>
+                      {readers.length === 0 ? <span style={{ color: 'var(--text-muted)' }}>none</span> : readers.join(', ')}
+                    </td>
+                  </tr>
+                );
+              })}
+            </tbody>
+          </table>
+        </div>
+      )}
+
+      <div style={{
+        marginTop: 24,
+        padding: 12,
+        background: 'var(--bg-elevated)',
+        border: '1px solid var(--border)',
+        borderRadius: 6,
+        fontSize: 12,
+        color: 'var(--text-muted)',
+        lineHeight: 1.6,
+      }}>
+        <strong style={{ color: 'var(--text-secondary)' }}>Two scopes per OAuth client:</strong>{' '}
+        <em>Writers</em> = clients with this source as their <code>source_id</code> (write authority).{' '}
+        <em>Readers</em> = clients with this source in their <code>federated_read</code> list (read access via federation).
+        Manage federation per-client from the <a href="#agents" style={{ color: '#60a5fa' }}>Agents</a> tab using the
+        "Manage reads" action.
+      </div>
+    </div>
+  );
+}
@@ -85,10 +85,6 @@ gbrain get media/articles/<slug>

 # 5. Cross-link entities
 #    For every person/company mentioned, add a timeline back-link.
-#    Mark NEW pages minted for article subjects the reader only reads ABOUT
-#    (not personal contacts) as reference: `gbrain reference <slug>`
-#    (or reference: true in frontmatter). Exempts them from coverage nudges;
-#    they stay searchable. Default for real contacts: do NOT set it.
 ```

 ## Quality bar
@@ -273,13 +273,6 @@ Cross-link entities mentioned in the analysis:
 - For every person the right column references with a brain page, add a
  back-link from `people/<slug>` to the new `media/books/<slug>-personalized`
  page (per `conventions/quality.md` Iron Law).
- **Mark book figures as reference entities.** Any NEW person/company page you
-  mint for a figure from the book (an author, a historical figure, a company
-  the book discusses) — someone the reader reads ABOUT but doesn't personally
-  interact with — should be flagged: `gbrain reference <slug>` (or
-  `reference: true` in frontmatter). They stay fully searchable/linkable but
-  are exempt from coverage nudges (timeline/links). Skip this for anyone the
-  reader actually knows. Default for normal contacts: do NOT set it.

 ## Quality bar (the bar)

@@ -1,62 +0,0 @@
-# Convention: Reference entities (canon figures)
-
-Some person/company pages are people/orgs the user **reads about** but does not
-personally interact with — a book's author, a historical figure, a company an
-article discusses (Andy Grove, Kleiner Perkins, Intel…). They are real
-knowledge, worth a page, but they have **no dated history in the user's own
-life**, so the entity coverage metrics (`timeline_coverage`,
-`entity_link_coverage`) flag them as permanently incomplete with no honest fix.
-
-The `reference: true` frontmatter flag resolves this.
-
-## What it does
-
- A page with `reference: true` is **exempt from the entity coverage metrics
-  only** (`timeline_coverage`, `entity_link_coverage`, and their onboard
-  nudges).
- It keeps its real `type` (`person` / `company`), so it stays **fully
-  searchable, enrichable, linkable, and edge-resolvable**. NOTHING about
-  retrieval changes — this is the whole reason it's a flag, not a new `type`.
- It is **opt-in**. Absent / `false` / anything-but-`true` = a normal entity
-  that DOES count toward coverage. **This is the default — do not set it on real
-  contacts.**
-
-## When to set it
-
-Set `reference: true` when the entity is a figure/org the user reads ABOUT, not
-someone they deal with:
-
- authors and figures discussed in a book (book-mirror) or article
-  (article-enrichment)
- historical / canon figures imported as reference knowledge
- companies named only as examples in source material
-
-Do NOT set it for people the user actually meets, emails, or works with — those
-are normal entities whose missing timeline/links is a real, actionable gap.
-
-## How to set it
-
-```bash
-gbrain reference <slug>            # mark as reference
-gbrain reference <slug> --unset    # back to a normal entity
-```
-
-The command writes the flag to BOTH the markdown frontmatter (durable; survives
-re-ingest / engine rebuild — markdown is the source of truth) AND the engine
-JSONB (so coverage reflects it immediately, no re-sync). It's idempotent. You
-can also hand-edit frontmatter (`reference: true`) and re-ingest.
-
-## Why a flag, not a type
-
-A new `type: reference-person` would drop the page out of every
-`type IN ('person','company')` filter — search, enrichment, whoknows, link
-inference — so you'd lose the figure everywhere, not just the metric. The flag
-narrows the change to exactly the coverage denominators and nothing else.
-
-## Implementation
-
-`src/core/reference-flag.ts` — `referenceExclusionSql(alias?)` is the single
-source of truth for the predicate `(frontmatter->>'reference') IS DISTINCT FROM
-'true'`, ANDed into both numerator and denominator at every coverage site
-(getHealth in both engines, onboard/checks.ts, init-nudge.ts). Backed by the GIN
-index on `pages.frontmatter`.
@@ -268,18 +268,6 @@ Active items, pending decisions, things to track.
 - **YYYY-MM-DD** | Event description [Source: ...]
 ```

-### Reference entities (canon figures)
-
-If the entity is someone/something the user reads ABOUT but does not personally
-interact with — a book author, a historical figure, a company discussed in an
-article — mark the page as reference: `gbrain reference <slug>` (or
-`reference: true` in frontmatter). Reference pages keep their `person`/`company`
-type and stay fully searchable, enrichable, and linkable; they are only exempt
-from the entity coverage nudges (timeline/links) that don't apply to figures
-with no dated history in the user's own life. **Default: do NOT set it** — real
-people and companies the user deals with are normal entities. Full convention:
-`conventions/reference-entities.md`.
-
 ### Step 7: Cross-reference

 - Update company pages from person enrichment (and vice versa)
@@ -270,11 +270,6 @@ Populate them periodically or after major imports:
 - `gbrain stats` — verify `link_count > 0` and `timeline_entry_count > 0` after extraction.
 - `gbrain health` — review `link_coverage` and `timeline_coverage` percentages
  on entity pages (person/company). Below 50% means more extraction is needed.
-  Note: pages flagged `reference: true` (canon/reference figures the user only
-  reads about) are EXEMPT from these two metrics — if coverage looks stuck
-  because of book/article-imported figures with no real history, mark them with
-  `gbrain reference <slug>` rather than chasing the percentage. See
-  `conventions/reference-entities.md`.

 Available link types (use with `gbrain graph-query --type`):
 `attended`, `works_at`, `invested_in`, `founded`, `advises`, `mentions`, `source`.
@@ -1,13 +1,13 @@
 // AUTO-GENERATED — do not edit by hand.
 // Run `bun run scripts/build-admin-embedded.ts` to regenerate.
-// Source: admin/dist/ at 2026-05-27.
+// Source: admin/dist/ at 2026-07-22.
 //
 // Bun resolves the file: imports to a path that works at runtime even
 // inside a compiled binary (`bun build --compile`). The manifest maps
 // the request path the express handler sees to (resolved-path, mime).

 // @ts-ignore — type: 'file' is Bun ESM, not in lib.d.ts
-import A_0_assets_index_CoGEje3__js from '../admin/dist/assets/index-CoGEje3-.js' with { type: 'file' };
+import A_0_assets_index_BpDk4NI4_js from '../admin/dist/assets/index-BpDk4NI4.js' with { type: 'file' };
 // @ts-ignore — type: 'file' is Bun ESM, not in lib.d.ts
 import A_1_assets_index_GxkWX7v3_css from '../admin/dist/assets/index-GxkWX7v3.css' with { type: 'file' };
 // @ts-ignore — type: 'file' is Bun ESM, not in lib.d.ts
@@ -19,7 +19,7 @@ export interface AdminAsset {
 }

 export const ADMIN_ASSETS: Record<string, AdminAsset> = {
-  "/admin/assets/index-CoGEje3-.js": { path: A_0_assets_index_CoGEje3__js as unknown as string, mime: "application/javascript; charset=utf-8" },
+  "/admin/assets/index-BpDk4NI4.js": { path: A_0_assets_index_BpDk4NI4_js as unknown as string, mime: "application/javascript; charset=utf-8" },
  "/admin/assets/index-GxkWX7v3.css": { path: A_1_assets_index_GxkWX7v3_css as unknown as string, mime: "text/css; charset=utf-8" },
  "/admin/index.html": { path: A_2_index_html as unknown as string, mime: "text/html; charset=utf-8" },
 };
@@ -54,7 +54,7 @@ export function bigintToStringReplacer(_key: string, value: unknown): unknown {
 }

 // CLI-only commands that bypass the operation layer
-export const CLI_ONLY = new Set(['init', 'reinit-pglite', 'upgrade', 'post-upgrade', 'check-update', 'integrations', 'publish', 'check-backlinks', 'lint', 'report', 'import', 'export', 'files', 'embed', 'serve', 'call', 'config', 'doctor', 'migrate', 'eval', 'sync', 'extract', 'extract-conversation-facts', 'enrich', 'reference', 'features', 'autopilot', 'graph-query', 'jobs', 'agent', 'apply-migrations', 'skillpack-check', 'skillpack', 'resolvers', 'integrity', 'repair-jsonb', 'orphans', 'sources', 'mounts', 'dream', 'check-resolvable', 'routing-eval', 'skillify', 'smoke-test', 'providers', 'storage', 'repos', 'code-def', 'code-refs', 'reindex', 'reindex-code', 'reindex-frontmatter', 'code-callers', 'code-callees', 'reconcile-links', 'frontmatter', 'auth', 'friction', 'claw-test', 'book-mirror', 'takes', 'think', 'salience', 'anomalies', 'calibration', 'transcripts', 'models', 'remote', 'recall', 'forget', 'edges-backfill', 'cache', 'ze-switch', 'founder', 'brainstorm', 'lsd', 'schema', 'capture', 'onboard', 'conversation-parser', 'status', 'connect', 'skillopt', 'quarantine', 'self-upgrade', 'advisor', 'watch', 'reindex-search-vector']);
+export const CLI_ONLY = new Set(['init', 'reinit-pglite', 'upgrade', 'post-upgrade', 'check-update', 'integrations', 'publish', 'check-backlinks', 'lint', 'report', 'import', 'export', 'files', 'embed', 'serve', 'call', 'config', 'doctor', 'migrate', 'eval', 'sync', 'extract', 'extract-conversation-facts', 'enrich', 'features', 'autopilot', 'graph-query', 'jobs', 'agent', 'apply-migrations', 'skillpack-check', 'skillpack', 'resolvers', 'integrity', 'repair-jsonb', 'orphans', 'sources', 'mounts', 'dream', 'check-resolvable', 'routing-eval', 'skillify', 'smoke-test', 'providers', 'storage', 'repos', 'code-def', 'code-refs', 'reindex', 'reindex-code', 'reindex-frontmatter', 'code-callers', 'code-callees', 'reconcile-links', 'frontmatter', 'auth', 'friction', 'claw-test', 'book-mirror', 'takes', 'think', 'salience', 'anomalies', 'calibration', 'transcripts', 'models', 'remote', 'recall', 'forget', 'edges-backfill', 'cache', 'ze-switch', 'founder', 'brainstorm', 'lsd', 'schema', 'capture', 'onboard', 'conversation-parser', 'status', 'connect', 'skillopt', 'quarantine', 'self-upgrade', 'advisor', 'watch', 'reindex-search-vector']);
 // CLI-only commands whose handlers print their own --help text. These are
 // excluded from the generic short-circuit so detailed per-command and
 // per-subcommand usage stays reachable.
@@ -1652,11 +1652,6 @@ async function handleCliOnly(command: string, args: string[]) {
        await runFiles(engine, args);
        break;
      }
-      case 'reference': {
-        const { runReference } = await import('./commands/reference.ts');
-        await runReference(engine, args);
-        break;
-      }
      case 'embed': {
        const { runEmbed } = await import('./commands/embed.ts');
        await runEmbed(engine, args);
@@ -24,6 +24,8 @@ import { loadConfig, toEngineConfig } from '../core/config.ts';
 import { createEngine } from '../core/engine-factory.ts';
 import type { BrainEngine } from '../core/engine.ts';
 import { sqlQueryForEngine, executeRawJsonb, type SqlQuery } from '../core/sql-query.ts';
+import { pgArray } from '../core/oauth-provider.ts';
+import { assertValidSourceId } from '../core/source-id.ts';

 function hashToken(token: string): string {
  return createHash('sha256').update(token).digest('hex');
@@ -165,6 +167,100 @@ async function list() {
  });
 }

+/**
+ * `gbrain auth list-clients [--json]` — read surface for OAuth 2.1 clients.
+ *
+ * The existing `gbrain auth list` shows LEGACY bearer tokens from
+ * `access_tokens`; this is the parallel for v0.26+ OAuth clients. Separate
+ * commands rather than merged output because the two models have different
+ * field sets (legacy: lifecycle dates; OAuth: scopes + source_id +
+ * federated_read).
+ *
+ * Human output is card-style (multi-line per client) instead of a fixed-
+ * width table — federated_read can hold many ids per client and a wide
+ * single-line layout truncates / wraps badly on terminals < 200 cols.
+ * JSON output uses a `schema_version: 1` envelope; additive only.
+ */
+async function listClients(args: string[]) {
+  const json = args.includes('--json');
+  const includeDeleted = args.includes('--include-deleted');
+  await withConfiguredSql(async (sql) => {
+    // Codex finding #2 (medium): default-hide soft-deleted clients so admin
+    // soft-deletes are honored by the CLI surface. Opt-in via flag.
+    const rows = includeDeleted
+      ? await sql`
+          SELECT client_id, client_name, scope, source_id, federated_read,
+                 grant_types, created_at, deleted_at
+          FROM oauth_clients
+          ORDER BY client_name
+        `
+      : await sql`
+          SELECT client_id, client_name, scope, source_id, federated_read,
+                 grant_types, created_at, deleted_at
+          FROM oauth_clients
+          WHERE deleted_at IS NULL
+          ORDER BY client_name
+        `;
+    if (json) {
+      const clients = rows.map((r) => ({
+        client_id: String(r.client_id),
+        client_name: String(r.client_name),
+        scope: r.scope == null ? null : String(r.scope),
+        source_id: r.source_id == null ? null : String(r.source_id),
+        federated_read: Array.isArray(r.federated_read)
+          ? (r.federated_read as string[]).map(String)
+          : [],
+        grant_types: Array.isArray(r.grant_types)
+          ? (r.grant_types as string[]).map(String)
+          : [],
+        created_at:
+          r.created_at instanceof Date
+            ? r.created_at.toISOString()
+            : r.created_at == null
+              ? null
+              : String(r.created_at),
+        deleted_at:
+          r.deleted_at instanceof Date
+            ? r.deleted_at.toISOString()
+            : r.deleted_at == null
+              ? null
+              : String(r.deleted_at),
+      }));
+      process.stdout.write(JSON.stringify({ schema_version: 1, clients }, null, 2) + '\n');
+      return;
+    }
+    if (rows.length === 0) {
+      console.log(
+        includeDeleted
+          ? 'No OAuth clients found (including deleted). Register one: gbrain auth register-client <name>'
+          : 'No active OAuth clients found. Register one: gbrain auth register-client <name>'
+            + '\n(Use --include-deleted to also show soft-deleted clients.)',
+      );
+      return;
+    }
+    for (let i = 0; i < rows.length; i++) {
+      const r = rows[i];
+      const fed = Array.isArray(r.federated_read)
+        ? (r.federated_read as string[]).map(String)
+        : [];
+      const grants = Array.isArray(r.grant_types)
+        ? (r.grant_types as string[]).map(String)
+        : [];
+      const deletedAt = r.deleted_at;
+      const status = deletedAt == null
+        ? ''
+        : ` [SOFT-DELETED ${deletedAt instanceof Date ? deletedAt.toISOString() : String(deletedAt)}]`;
+      console.log(`${sanitizeForTerminal(String(r.client_name))}${status}`);
+      console.log(`  client_id:    ${sanitizeForTerminal(String(r.client_id))}`);
+      console.log(`  scope:        ${r.scope == null ? '(none)' : sanitizeForTerminal(String(r.scope))}`);
+      console.log(`  grant types:  ${grants.length ? sanitizeForTerminal(grants.join(', ')) : '(none)'}`);
+      console.log(`  write source: ${r.source_id == null ? '(none)' : sanitizeForTerminal(String(r.source_id))}`);
+      console.log(`  federated:    ${fed.length ? sanitizeForTerminal(fed.join(', ')) : '(empty)'}`);
+      if (i < rows.length - 1) console.log('');
+    }
+  });
+}
+
 async function revoke(name: string) {
  if (!name) { console.error('Usage: auth revoke <name>'); process.exit(1); }
  await withConfiguredSql(async (sql) => {
@@ -301,6 +397,475 @@ async function test(url: string, token: string) {
  console.log(`\n🧠 Your brain is live! (${elapsed}s)`);
 }

+/**
+ * Strip ANSI escapes + C0/C1 control characters from a string before
+ * printing it to the operator's terminal. Defense for the
+ * codex-flagged terminal-control-injection class: a client_name or
+ * source_id registered via DCR with `\x1b[2J` (clear-screen) or
+ * `\x1b]0;TITLE\x07` (OSC title-change) would poison
+ * `gbrain auth list-clients` output otherwise.
+ *
+ * Replaces unsafe bytes with their `\xNN` hex escape so the operator
+ * sees that something weird is in the field, instead of silent
+ * mutilation. Tab and newline are preserved as-is so legitimate
+ * multi-line values render.
+ */
+export function sanitizeForTerminal(s: string): string {
+  // ALL C0/C1 controls + DEL get escaped. Codex re-review caught that
+  // preserving `\n` lets a DCR-registered client_name spoof additional
+  // human-output lines in list-clients (a real attack — newline in the
+  // name visually adds a fake row to the operator's terminal). Tab is
+  // also escaped for the same reason — field-separator spoofing.
+  // C0: 0x00-0x1F. DEL: 0x7F. C1: 0x80-0x9F.
+  return s.replace(/[\x00-\x1f\x7f-\x9f]/g, (ch) =>
+    `\\x${ch.charCodeAt(0).toString(16).padStart(2, '0')}`,
+  );
+}
+
+export interface ResolvedClient {
+  client_id: string;
+  client_name: string;
+  source_id: string | null;
+  federated_read: string[];
+  deleted_at: Date | string | null;
+}
+
+export type FederatedReadOutcome =
+  | { kind: 'noop'; reason: 'already-granted' | 'not-present' | 'same-list'; client: ResolvedClient; current: string[] }
+  | { kind: 'updated'; client: ResolvedClient; before: string[]; after: string[] };
+
+/**
+ * Resolve an OAuth client by client_id (exact) or client_name (unique).
+ * Errors on no-match and on ambiguous client_name (>1 row). client_id
+ * takes precedence — if a long hash is passed and matches, returns
+ * immediately without ever querying by name.
+ *
+ * Legacy bearer tokens in `access_tokens` are NOT searched. Federated read
+ * scope is an OAuth-client concept (oauth_clients.federated_read column);
+ * legacy bearers have no source scope.
+ */
+/**
+ * Resolve an OAuth client. Codex finding #2 (medium): default-hide
+ * soft-deleted clients so admin-soft-deleted rows aren't mutated by the
+ * CLI. The `includeDeleted` opt is reserved for future read-side surfaces;
+ * grant/revoke/set ALWAYS filter active rows only.
+ */
+export async function resolveClient(
+  sql: SqlQuery,
+  nameOrId: string,
+  opts: { includeDeleted?: boolean } = {},
+): Promise<ResolvedClient> {
+  const allowDeleted = opts.includeDeleted === true;
+  const byId = allowDeleted
+    ? await sql`
+        SELECT client_id, client_name, source_id, federated_read, deleted_at
+        FROM oauth_clients WHERE client_id = ${nameOrId} LIMIT 1
+      `
+    : await sql`
+        SELECT client_id, client_name, source_id, federated_read, deleted_at
+        FROM oauth_clients WHERE client_id = ${nameOrId} AND deleted_at IS NULL LIMIT 1
+      `;
+  if (byId.length === 1) return normalizeClientRow(byId[0]);
+  const byName = allowDeleted
+    ? await sql`
+        SELECT client_id, client_name, source_id, federated_read, deleted_at
+        FROM oauth_clients WHERE client_name = ${nameOrId}
+      `
+    : await sql`
+        SELECT client_id, client_name, source_id, federated_read, deleted_at
+        FROM oauth_clients WHERE client_name = ${nameOrId} AND deleted_at IS NULL
+      `;
+  if (byName.length === 0) {
+    throw new Error(
+      `No active OAuth client found with name or id "${nameOrId}". ` +
+        `Run \`gbrain auth register-client <name>\` to create one, ` +
+        `or \`gbrain auth list-clients\` to see what exists. ` +
+        `(Soft-deleted clients are hidden by default.)`,
+    );
+  }
+  if (byName.length > 1) {
+    const ids = byName.map((r) => `  ${String(r.client_id)}`).join('\n');
+    throw new Error(
+      `Multiple active OAuth clients named "${nameOrId}". Pass the full client_id instead:\n${ids}`,
+    );
+  }
+  return normalizeClientRow(byName[0]);
+}
+
+function normalizeClientRow(row: Record<string, unknown>): ResolvedClient {
+  const fed = row.federated_read;
+  return {
+    client_id: String(row.client_id),
+    client_name: String(row.client_name),
+    source_id: row.source_id == null ? null : String(row.source_id),
+    federated_read: Array.isArray(fed) ? (fed as string[]).map(String) : [],
+    deleted_at: row.deleted_at == null
+      ? null
+      : (row.deleted_at as Date | string),
+  };
+}
+
+/**
+ * Validate the source_id shape AND DB existence. Codex finding #3 (medium):
+ * a manually-INSERTed source row with weird chars (e.g. comma, quote)
+ * would otherwise land in oauth_clients.federated_read as a never-deletable
+ * malformed entry. Fail at the boundary before the existence query so
+ * malformed input gets the validator's hint, not a "does not exist" hint
+ * pointing at a non-creatable id.
+ */
+export async function assertSourceExists(sql: SqlQuery, sourceId: string): Promise<void> {
+  assertValidSourceId(sourceId);
+  const rows = await sql`SELECT id FROM sources WHERE id = ${sourceId} LIMIT 1`;
+  if (rows.length === 0) {
+    throw new Error(
+      `Source "${sourceId}" does not exist. Run \`gbrain sources list\` to see registered sources, ` +
+        `or \`gbrain sources add ${sourceId}\` to create it.`,
+    );
+  }
+}
+
+/**
+ * Atomic append: array_append + NOT-ANY guard so the row-lock fully
+ * serializes concurrent grant/revoke against the same client. Codex
+ * finding #1 (HIGH): the previous read-modify-write shape allowed a
+ * concurrent revoke to be silently UNDONE by a racing grant.
+ *
+ * Returns the post-write federated_read array, or null when no rows
+ * matched (already-granted, soft-deleted, or missing client). Callers
+ * disambiguate via prior resolveClient + includes() check.
+ *
+ * `WHERE deleted_at IS NULL` is part of the atomic guard so a client
+ * soft-deleted between resolveClient and the UPDATE can't be mutated.
+ */
+async function appendFederatedReadAtomic(
+  sql: SqlQuery,
+  clientId: string,
+  sourceId: string,
+): Promise<string[] | null> {
+  const rows = await sql`
+    UPDATE oauth_clients
+    SET federated_read = array_append(federated_read, ${sourceId})
+    WHERE client_id = ${clientId}
+      AND deleted_at IS NULL
+      AND NOT (${sourceId} = ANY(federated_read))
+    RETURNING federated_read
+  `;
+  if (rows.length === 0) return null;
+  const fed = rows[0].federated_read;
+  return Array.isArray(fed) ? (fed as string[]).map(String) : [];
+}
+
+/**
+ * Atomic remove: array_remove + ANY guard. Same race-correctness story
+ * as appendFederatedReadAtomic. Returns post-write array or null.
+ */
+async function removeFederatedReadAtomic(
+  sql: SqlQuery,
+  clientId: string,
+  sourceId: string,
+): Promise<string[] | null> {
+  const rows = await sql`
+    UPDATE oauth_clients
+    SET federated_read = array_remove(federated_read, ${sourceId})
+    WHERE client_id = ${clientId}
+      AND deleted_at IS NULL
+      AND ${sourceId} = ANY(federated_read)
+    RETURNING federated_read
+  `;
+  if (rows.length === 0) return null;
+  const fed = rows[0].federated_read;
+  return Array.isArray(fed) ? (fed as string[]).map(String) : [];
+}
+
+/**
+ * Wholesale array overwrite for `set-federated-read`. Honors the
+ * deleted_at filter. Last-writer-wins semantics under concurrent
+ * `set` calls is acceptable — the user is asserting "this exact list"
+ * intent; concurrent set+set just means whichever ran second wins.
+ * Concurrent set+grant or set+revoke is also last-writer-wins, which
+ * is the documented contract for `set`.
+ */
+async function replaceFederatedReadAtomic(
+  sql: SqlQuery,
+  clientId: string,
+  next: string[],
+): Promise<string[] | null> {
+  // TEXT[] binding via pgArray() string-literal escaping (see helper
+  // for the security note). Our narrow SqlQuery surface
+  // (src/core/sql-query.ts) doesn't bind JS arrays directly.
+  const literal = pgArray(next);
+  const rows = await sql`
+    UPDATE oauth_clients
+    SET federated_read = ${literal}
+    WHERE client_id = ${clientId}
+      AND deleted_at IS NULL
+    RETURNING federated_read
+  `;
+  if (rows.length === 0) return null;
+  const fed = rows[0].federated_read;
+  return Array.isArray(fed) ? (fed as string[]).map(String) : [];
+}
+
+/**
+ * Pure helper: dedupe a comma-separated source-id list while preserving
+ * insertion order. Empty input → empty array. Exported so the CLI parser
+ * and tests share one normalizer.
+ */
+export function parseSourceCsv(csv: string): string[] {
+  const requested = csv.split(',').map((s) => s.trim()).filter(Boolean);
+  const seen = new Set<string>();
+  const out: string[] = [];
+  for (const s of requested) {
+    if (!seen.has(s)) {
+      seen.add(s);
+      out.push(s);
+    }
+  }
+  return out;
+}
+
+export interface FederatedReadOpts {
+  /** When true, compute the outcome but skip the persisting UPDATE. */
+  dryRun?: boolean;
+}
+
+/**
+ * Core: append a source to the client's federated_read.
+ *
+ * Atomicity contract (Codex finding #1, HIGH):
+ *   The actual write goes through `appendFederatedReadAtomic` which
+ *   serializes at the row-lock so concurrent grant/revoke against the
+ *   same client cannot lose updates. The race vector that previously
+ *   silently restored revoked access is closed: under two operators
+ *   racing `revoke-read sensitive` + `grant-read harmless`, postgres
+ *   serializes the two UPDATEs and BOTH ops apply (sensitive removed,
+ *   harmless added), instead of one clobbering the other.
+ *
+ * The reported `before` is the snapshot at resolveClient time, which
+ * may be stale relative to a concurrent racer. The `after` reflects
+ * the post-UPDATE state from RETURNING (always fresh).
+ */
+export async function grantReadCore(
+  sql: SqlQuery,
+  nameOrId: string,
+  sourceId: string,
+  opts: FederatedReadOpts = {},
+): Promise<FederatedReadOutcome> {
+  const client = await resolveClient(sql, nameOrId);
+  await assertSourceExists(sql, sourceId);
+  if (client.federated_read.includes(sourceId)) {
+    return { kind: 'noop', reason: 'already-granted', client, current: client.federated_read };
+  }
+  if (opts.dryRun) {
+    // Compute the would-be result without touching the row. Last-known
+    // snapshot is best-effort under concurrent writes.
+    const projected = [...client.federated_read, sourceId];
+    return { kind: 'updated', client, before: client.federated_read, after: projected };
+  }
+  const after = await appendFederatedReadAtomic(sql, client.client_id, sourceId);
+  if (after === null) {
+    // Two equivalent failure modes: (a) racing grant-read already added
+    // the source and the NOT-ANY guard suppressed our UPDATE, or
+    // (b) the client was soft-deleted between resolveClient and UPDATE.
+    // (a) is the more common path. Re-resolve to confirm + report.
+    const reresolved = await resolveClient(sql, client.client_id, { includeDeleted: true });
+    if (reresolved.deleted_at != null) {
+      throw new Error(`Client "${client.client_name}" was soft-deleted before write could land.`);
+    }
+    return { kind: 'noop', reason: 'already-granted', client: reresolved, current: reresolved.federated_read };
+  }
+  return { kind: 'updated', client, before: client.federated_read, after };
+}
+
+/**
+ * Core: remove a source from the client's federated_read. Atomic via
+ * array_remove + ANY-guard. Same race-correctness rationale as
+ * grantReadCore — concurrent ops serialize at the row lock.
+ */
+export async function revokeReadCore(
+  sql: SqlQuery,
+  nameOrId: string,
+  sourceId: string,
+  opts: FederatedReadOpts = {},
+): Promise<FederatedReadOutcome> {
+  const client = await resolveClient(sql, nameOrId);
+  if (!client.federated_read.includes(sourceId)) {
+    return { kind: 'noop', reason: 'not-present', client, current: client.federated_read };
+  }
+  if (opts.dryRun) {
+    const projected = client.federated_read.filter((s) => s !== sourceId);
+    return { kind: 'updated', client, before: client.federated_read, after: projected };
+  }
+  const after = await removeFederatedReadAtomic(sql, client.client_id, sourceId);
+  if (after === null) {
+    // Same disambiguation as grant: either a concurrent revoke already
+    // removed the source (most common) or the client was soft-deleted.
+    const reresolved = await resolveClient(sql, client.client_id, { includeDeleted: true });
+    if (reresolved.deleted_at != null) {
+      throw new Error(`Client "${client.client_name}" was soft-deleted before write could land.`);
+    }
+    return { kind: 'noop', reason: 'not-present', client: reresolved, current: reresolved.federated_read };
+  }
+  return { kind: 'updated', client, before: client.federated_read, after };
+}
+
+/**
+ * Core: replace the whole federated_read list. Idempotent on same list.
+ *
+ * Race semantics: wholesale-overwrite + deleted_at guard. Concurrent
+ * set+set is last-writer-wins (documented contract for `set` — the
+ * operator is asserting the exact list). Concurrent set+grant or
+ * set+revoke is also last-writer-wins. If a strict-merge semantics is
+ * needed, use grant-read / revoke-read individually.
+ */
+export async function setFederatedReadCore(
+  sql: SqlQuery,
+  nameOrId: string,
+  sourceCsv: string,
+  opts: FederatedReadOpts = {},
+): Promise<FederatedReadOutcome> {
+  const next = parseSourceCsv(sourceCsv);
+  const client = await resolveClient(sql, nameOrId);
+  for (const s of next) {
+    await assertSourceExists(sql, s);
+  }
+  const prev = client.federated_read;
+  const same = prev.length === next.length && prev.every((v, i) => v === next[i]);
+  if (same) {
+    return { kind: 'noop', reason: 'same-list', client, current: prev };
+  }
+  if (opts.dryRun) {
+    return { kind: 'updated', client, before: prev, after: next };
+  }
+  const after = await replaceFederatedReadAtomic(sql, client.client_id, next);
+  if (after === null) {
+    throw new Error(`Client "${client.client_name}" was soft-deleted before write could land.`);
+  }
+  return { kind: 'updated', client, before: prev, after };
+}
+
+function printOutcome(
+  verb: 'grant' | 'revoke' | 'set',
+  sourceArg: string,
+  outcome: FederatedReadOutcome,
+  dryRun: boolean,
+): void {
+  // Terminal-injection defense (Codex finding #5, low): a client_name
+  // registered via DCR with ANSI escapes or control chars would
+  // otherwise poison this output. Sanitize ALL strings that round-trip
+  // from the DB before printing.
+  const s = sanitizeForTerminal;
+  const prefix = dryRun ? '[dry-run] ' : '';
+  if (outcome.kind === 'noop') {
+    const name = s(outcome.client.client_name);
+    if (outcome.reason === 'already-granted') {
+      console.log(`${prefix}No change: "${name}" already reads "${s(sourceArg)}".`);
+    } else if (outcome.reason === 'not-present') {
+      console.log(`${prefix}No change: "${name}" did not read "${s(sourceArg)}".`);
+    } else {
+      console.log(`${prefix}No change: "${name}" federated_read already matches.`);
+    }
+    console.log(`  federated_read: ${outcome.current.map(s).join(', ') || '(empty)'}`);
+    return;
+  }
+  const { client, before, after } = outcome;
+  const name = s(client.client_name);
+  const wouldOrDid = dryRun ? 'Would' : 'Did';
+  if (verb === 'grant') {
+    console.log(`${prefix}${wouldOrDid} grant: "${name}" can now read "${s(sourceArg)}".`);
+    console.log(`  federated_read: ${after.map(s).join(', ')}`);
+  } else if (verb === 'revoke') {
+    console.log(`${prefix}${wouldOrDid} revoke: "${name}" no longer reads "${s(sourceArg)}".`);
+    console.log(`  federated_read: ${after.map(s).join(', ') || '(empty — client has no federated reads)'}`);
+  } else {
+    console.log(`${prefix}${wouldOrDid} update "${name}" federated_read:`);
+    console.log(`  before: ${before.map(s).join(', ') || '(empty)'}`);
+    console.log(`  after:  ${after.map(s).join(', ') || '(empty)'}`);
+  }
+  if (after.length === 0) {
+    console.log(
+      'Warning: client now reads no sources via federation. Queries through this ' +
+        'client will only see content scoped explicitly via its write source.',
+    );
+  }
+}
+
+/**
+ * Strip `--dry-run` from a positional-arg list. Returns the filtered list
+ * plus the flag value. Kept positional-tolerant — the existing
+ * `auth grant-read alice source` shape MUST keep working, AND
+ * `auth grant-read alice source --dry-run` AND `auth grant-read --dry-run alice source`.
+ */
+export function extractDryRun(args: string[]): { dryRun: boolean; rest: string[] } {
+  let dryRun = false;
+  const rest: string[] = [];
+  for (const a of args) {
+    if (a === '--dry-run') {
+      dryRun = true;
+      continue;
+    }
+    rest.push(a);
+  }
+  return { dryRun, rest };
+}
+
+async function grantRead(args: string[]): Promise<void> {
+  const { dryRun, rest } = extractDryRun(args);
+  const [nameOrId, sourceId] = rest;
+  if (!nameOrId || !sourceId) {
+    console.error('Usage: gbrain auth grant-read <client-name-or-id> <source-id> [--dry-run]');
+    process.exit(1);
+  }
+  try {
+    await withConfiguredSql(async (sql) => {
+      const outcome = await grantReadCore(sql, nameOrId, sourceId, { dryRun });
+      printOutcome('grant', sourceId, outcome, dryRun);
+    });
+  } catch (e: any) {
+    console.error('Error:', e.message);
+    process.exit(1);
+  }
+}
+
+async function revokeRead(args: string[]): Promise<void> {
+  const { dryRun, rest } = extractDryRun(args);
+  const [nameOrId, sourceId] = rest;
+  if (!nameOrId || !sourceId) {
+    console.error('Usage: gbrain auth revoke-read <client-name-or-id> <source-id> [--dry-run]');
+    process.exit(1);
+  }
+  try {
+    await withConfiguredSql(async (sql) => {
+      const outcome = await revokeReadCore(sql, nameOrId, sourceId, { dryRun });
+      printOutcome('revoke', sourceId, outcome, dryRun);
+    });
+  } catch (e: any) {
+    console.error('Error:', e.message);
+    process.exit(1);
+  }
+}
+
+async function setFederatedRead(args: string[]): Promise<void> {
+  const { dryRun, rest } = extractDryRun(args);
+  const [nameOrId, sourceCsv] = rest;
+  if (!nameOrId || sourceCsv === undefined) {
+    console.error(
+      'Usage: gbrain auth set-federated-read <client-name-or-id> <source-id1,source-id2,...> [--dry-run]',
+    );
+    console.error('Pass an empty string ("") to clear all federated reads.');
+    process.exit(1);
+  }
+  try {
+    await withConfiguredSql(async (sql) => {
+      const outcome = await setFederatedReadCore(sql, nameOrId, sourceCsv, { dryRun });
+      printOutcome('set', sourceCsv, outcome, dryRun);
+    });
+  } catch (e: any) {
+    console.error('Error:', e.message);
+    process.exit(1);
+  }
+}
+
 async function revokeClient(clientId: string) {
  if (!clientId) {
    console.error('Usage: auth revoke-client <client_id>');
@@ -319,7 +884,7 @@ async function revokeClient(clientId: string) {
        console.error(`No client found with id "${clientId}"`);
        process.exit(1);
      }
-      console.log(`OAuth client revoked: "${rows[0].client_name}" (${clientId})`);
+      console.log(`OAuth client revoked: "${sanitizeForTerminal(String(rows[0].client_name))}" (${clientId})`);
      console.log('Tokens and authorization codes purged via cascade.');
    });
  } catch (e: any) {
@@ -440,6 +1005,15 @@ export function parseRegisterClientArgs(args: string[]): RegisterClientArgs {
  if (!grantTypesSet && out.redirectUris.length > 0) {
    out.grantTypes = ['authorization_code', 'refresh_token'];
  }
+  // Codex re-review (medium): validate source_id shape at the CLI boundary
+  // so register-client can't seed malformed entries into source_id /
+  // federated_read that subsequent grant/revoke/set commands can't manage.
+  assertValidSourceId(out.sourceId);
+  if (out.federatedRead) {
+    for (const s of out.federatedRead) {
+      assertValidSourceId(s);
+    }
+  }
  return out;
 }

@@ -557,6 +1131,10 @@ export async function runAuth(args: string[]): Promise<void> {
    }
    case 'register-client': await registerClient(rest[0], rest.slice(1)); return;
    case 'revoke-client': await revokeClient(rest[0]); return;
+    case 'list-clients': await listClients(rest); return;
+    case 'grant-read': await grantRead(rest); return;
+    case 'revoke-read': await revokeRead(rest); return;
+    case 'set-federated-read': await setFederatedRead(rest); return;
    case 'test': {
      const tokenIdx = rest.indexOf('--token');
      const url = rest.find(a => !a.startsWith('--') && a !== rest[tokenIdx + 1]);
@@ -594,6 +1172,13 @@ Usage:
     --bound-max-concurrent <n>                            Bound submit_agent concurrency (default: 1)
     --budget-usd-per-day <usd>                            Bound submit_agent daily spend cap
  gbrain auth revoke-client <client_id>                   Hard-delete an OAuth 2.1 client (cascades to tokens + codes)
+  gbrain auth list-clients [--json]                       List OAuth 2.1 clients with scope + write source + federated_read.
+  gbrain auth grant-read <name|client_id> <source-id> [--dry-run]
+                                                          Add a source to the client's federated_read list (idempotent).
+  gbrain auth revoke-read <name|client_id> <source-id> [--dry-run]
+                                                          Remove a source from the client's federated_read list (idempotent).
+  gbrain auth set-federated-read <name|client_id> "<id1,id2,...>" [--dry-run]
+                                                          Replace the client's whole federated_read list. Pass "" to clear.
  gbrain auth test <url> --token <token>                  Smoke-test a remote MCP server
 `);
  }
@@ -1,130 +0,0 @@
-// gbrain reference <slug> [--unset] [--brain <dir>] [--json]
-//
-// Mark (or unmark) a page as a reference-only entity. A reference page keeps its
-// real type (person/company) — fully searchable/enrichable/linkable — but is
-// exempt from the entity coverage metrics (timeline_coverage,
-// entity_link_coverage). See src/core/reference-flag.ts for the rationale.
-//
-// Durability: the flag is written to BOTH the markdown frontmatter (source of
-// truth; survives re-ingest / engine rebuild) AND the engine `pages.frontmatter`
-// JSONB (so the metric reflects it immediately, no re-sync needed).
-
-import { existsSync, readFileSync, writeFileSync } from 'node:fs';
-import { isAbsolute, join, resolve } from 'node:path';
-import { setCliExitVerdict } from '../core/cli-force-exit.ts';
-import type { BrainEngine } from '../core/engine.ts';
-import { REFERENCE_FRONTMATTER_KEY } from '../core/reference-flag.ts';
-import { resolveSourceId } from '../core/source-resolver.ts';
-
-/** Insert/replace/remove `reference: true` in a markdown frontmatter block.
- *  Minimal-diff: only the one line changes; key order is otherwise preserved. */
-export function applyReferenceFrontmatter(content: string, on: boolean): string {
-  const keyLine = `${REFERENCE_FRONTMATTER_KEY}: true`;
-  const block = content.match(/^---\n([\s\S]*?)\n---/);
-
-  if (!block) {
-    // No frontmatter. Nothing to remove; if setting, prepend a block.
-    if (!on) return content;
-    return `---\n${keyLine}\n---\n\n${content}`;
-  }
-
-  let fm = block[1];
-  const hasKey = new RegExp(`^${REFERENCE_FRONTMATTER_KEY}:.*$`, 'm').test(fm);
-
-  if (on) {
-    fm = hasKey
-      ? fm.replace(new RegExp(`^${REFERENCE_FRONTMATTER_KEY}:.*$`, 'm'), keyLine)
-      : `${fm}\n${keyLine}`;
-  } else {
-    if (!hasKey) return content;
-    fm = fm.replace(new RegExp(`^${REFERENCE_FRONTMATTER_KEY}:.*$\\n?`, 'm'), '');
-  }
-
-  // Function replacement so YAML chars ($, & …) in fm aren't treated as
-  // replacement patterns.
-  return content.replace(/^---\n[\s\S]*?\n---/, () => `---\n${fm}\n---`);
-}
-
-function parseArgs(args: string[]): { slug?: string; unset: boolean; json: boolean; brain?: string; source?: string } {
-  let slug: string | undefined;
-  let unset = false;
-  let json = false;
-  let brain: string | undefined;
-  let source: string | undefined;
-  for (let i = 0; i < args.length; i++) {
-    const a = args[i];
-    if (a === '--unset') unset = true;
-    else if (a === '--json') json = true;
-    else if (a === '--brain' || a === '--dir') brain = args[++i];
-    else if (a === '--source') source = args[++i];
-    else if (!a.startsWith('--') && !slug) slug = a;
-  }
-  return { slug, unset, json, brain, source };
-}
-
-async function resolveBrainDir(engine: BrainEngine, explicit?: string): Promise<string | null> {
-  if (explicit) return resolve(explicit);
-  const configured = await engine.getConfig('sync.repo_path');
-  if (configured && existsSync(configured)) return resolve(configured);
-  return null;
-}
-
-export async function runReference(engine: BrainEngine, args: string[]): Promise<void> {
-  const { slug, unset, json, brain, source } = parseArgs(args);
-  if (!slug) {
-    console.error('Usage: gbrain reference <slug> [--unset] [--source <id>] [--brain <dir>] [--json]');
-    setCliExitVerdict(2);
-    return;
-  }
-
-  const brainDir = await resolveBrainDir(engine, brain);
-  if (!brainDir) {
-    console.error('reference: could not resolve brain dir. Pass --brain <dir> or set sync.repo_path.');
-    setCliExitVerdict(1);
-    return;
-  }
-
-  const rel = slug.endsWith('.md') ? slug : `${slug}.md`;
-  const filePath = isAbsolute(rel) ? rel : join(brainDir, rel);
-  if (!existsSync(filePath)) {
-    console.error(`reference: page not found on disk: ${filePath}`);
-    setCliExitVerdict(1);
-    return;
-  }
-
-  // 1) Durable: edit the markdown frontmatter.
-  const before = readFileSync(filePath, 'utf8');
-  const after = applyReferenceFrontmatter(before, !unset);
-  const fileChanged = after !== before;
-  if (fileChanged) writeFileSync(filePath, after, 'utf8');
-
-  // 2) Immediate: update the engine frontmatter JSONB so the metric reflects it
-  //    without waiting for a re-sync. Scoped to (source_id, slug) — slug is only
-  //    unique per source, so a bare-slug UPDATE would clobber same-named pages
-  //    in every other source. Resolve the source from the brain dir (tier-4
-  //    local_path match) unless --source / GBRAIN_SOURCE overrides.
-  const cleanSlug = slug.replace(/\.md$/, '');
-  const sourceId = await resolveSourceId(engine, source ?? null, brainDir);
-  if (unset) {
-    await engine.executeRaw(
-      `UPDATE pages SET frontmatter = frontmatter - '${REFERENCE_FRONTMATTER_KEY}' WHERE slug = $1 AND source_id = $2`,
-      [cleanSlug, sourceId],
-    );
-  } else {
-    await engine.executeRaw(
-      `UPDATE pages SET frontmatter = jsonb_set(COALESCE(frontmatter, '{}'::jsonb), '{${REFERENCE_FRONTMATTER_KEY}}', 'true'::jsonb) WHERE slug = $1 AND source_id = $2`,
-      [cleanSlug, sourceId],
-    );
-  }
-
-  const result = { slug: cleanSlug, source_id: sourceId, reference: !unset, file_changed: fileChanged, file: filePath };
-  if (json) {
-    console.log(JSON.stringify(result));
-  } else {
-    const verb = unset ? 'unmarked' : 'marked';
-    console.log(`${verb} ${cleanSlug} as reference=${!unset}${fileChanged ? '' : ' (frontmatter already current)'}`);
-    if (!unset) {
-      console.log('  → exempt from timeline_coverage / entity_link_coverage; still fully searchable & linkable.');
-    }
-  }
-}
@@ -365,6 +365,42 @@ export interface AgentClientSpend {
  inflight_count: number;
 }

+/**
+ * `/admin/api/sources` source list — the input rows for buildSyncStatusReport.
+ *
+ * Queries the JSONB config column directly (listSources doesn't carry it,
+ * but buildSyncStatusReport needs syncEnabled / strategy fields).
+ *
+ * Deliberately does NOT filter on local_path: in a push-only deployment
+ * (content arrives via MCP put_page / capture / ingest, not `gbrain sync`
+ * of a server checkout) every source has a null local_path — filtering on
+ * it would empty both the Sources tab AND the federation source-picker.
+ * buildSyncStatusReport does no disk I/O, so null-local_path sources
+ * report fine (pages/chunks from SQL, staleness 'unknown' / never-synced).
+ */
+export async function queryAdminSources(engine: BrainEngine): Promise<
+  Array<{ id: string; name: string; local_path: string | null; config: Record<string, unknown> }>
+> {
+  const rows = await engine.executeRaw<{
+    id: string;
+    name: string;
+    local_path: string | null;
+    config: Record<string, unknown> | string | null;
+  }>(
+    `SELECT id, name, local_path, config FROM sources
+     WHERE archived IS NOT TRUE
+     ORDER BY id`,
+  );
+  return rows.map((r) => ({
+    id: r.id,
+    name: r.name,
+    local_path: r.local_path,
+    config: typeof r.config === 'string'
+      ? (JSON.parse(r.config) as Record<string, unknown>)
+      : (r.config ?? {}),
+  }));
+}
+
 export async function queryAgentClientSpend(engine: BrainEngine): Promise<AgentClientSpend[]> {
  const sql = sqlQueryForEngine(engine);
  const rows = await sql`
@@ -1511,6 +1547,111 @@ export async function runServeHttp(engine: BrainEngine, options: ServeHttpOption
    }
  });

+  // ---------------------------------------------------------------------------
+  // Sources tab — read-only view of registered sources with sync + embed
+  // coverage stats. Drives the admin SPA's `Sources` page.
+  //
+  // Returns the same shape `gbrain sources status --json` prints, so the
+  // SPA stays in lockstep with the CLI surface.
+  // ---------------------------------------------------------------------------
+  app.get('/admin/api/sources', requireAdmin, async (_req: Request, res: Response) => {
+    try {
+      const { buildSyncStatusReport } = await import('./sync.ts');
+      const report = await buildSyncStatusReport(engine, await queryAdminSources(engine));
+      res.json(report);
+    } catch (e) {
+      const msg = e instanceof Error ? e.message : String(e);
+      res.status(503).json({ error: 'service_unavailable', detail: msg });
+    }
+  });
+
+  // ---------------------------------------------------------------------------
+  // Federated-read management (admin-side counterparts of the CLI commands
+  // `gbrain auth grant-read / revoke-read / set-federated-read`). All three
+  // route through the same *Core helpers as the CLI so race-safety,
+  // soft-delete filter, and source-id shape validation apply uniformly.
+  //
+  // The admin SPA's `Agents` page renders "Manage reads" actions per
+  // client backed by these endpoints.
+  // ---------------------------------------------------------------------------
+  app.get('/admin/api/agents/federated-read', requireAdmin, async (_req: Request, res: Response) => {
+    try {
+      const rows = await sql`
+        SELECT client_id, client_name, source_id, federated_read
+        FROM oauth_clients
+        WHERE deleted_at IS NULL
+        ORDER BY client_name
+      `;
+      const clients = rows.map((r) => ({
+        client_id: String(r.client_id),
+        client_name: String(r.client_name),
+        source_id: r.source_id == null ? null : String(r.source_id),
+        federated_read: Array.isArray(r.federated_read)
+          ? (r.federated_read as string[]).map(String)
+          : [],
+      }));
+      res.json({ clients });
+    } catch (e) {
+      const msg = e instanceof Error ? e.message : String(e);
+      res.status(503).json({ error: 'service_unavailable', detail: msg });
+    }
+  });
+
+  app.post('/admin/api/agents/:clientId/grant-read', requireAdmin, express.json(), async (req: Request, res: Response) => {
+    const clientId = String(req.params.clientId ?? '');
+    const sourceId = String(req.body?.source_id ?? '').trim();
+    if (!clientId || !sourceId) {
+      res.status(400).json({ error: 'invalid_request', detail: 'clientId path param + source_id body required' });
+      return;
+    }
+    try {
+      const { grantReadCore } = await import('./auth.ts');
+      const outcome = await grantReadCore(sql, clientId, sourceId);
+      res.json({ outcome });
+    } catch (e) {
+      const msg = e instanceof Error ? e.message : String(e);
+      res.status(400).json({ error: 'mutation_failed', detail: msg });
+    }
+  });
+
+  app.post('/admin/api/agents/:clientId/revoke-read', requireAdmin, express.json(), async (req: Request, res: Response) => {
+    const clientId = String(req.params.clientId ?? '');
+    const sourceId = String(req.body?.source_id ?? '').trim();
+    if (!clientId || !sourceId) {
+      res.status(400).json({ error: 'invalid_request', detail: 'clientId path param + source_id body required' });
+      return;
+    }
+    try {
+      const { revokeReadCore } = await import('./auth.ts');
+      const outcome = await revokeReadCore(sql, clientId, sourceId);
+      res.json({ outcome });
+    } catch (e) {
+      const msg = e instanceof Error ? e.message : String(e);
+      res.status(400).json({ error: 'mutation_failed', detail: msg });
+    }
+  });
+
+  app.post('/admin/api/agents/:clientId/set-federated-read', requireAdmin, express.json(), async (req: Request, res: Response) => {
+    const clientId = String(req.params.clientId ?? '');
+    const rawIds = req.body?.source_ids;
+    if (!clientId || !Array.isArray(rawIds)) {
+      res.status(400).json({ error: 'invalid_request', detail: 'clientId path param + source_ids[] body required' });
+      return;
+    }
+    // Encode the array as CSV so the same setFederatedReadCore signature
+    // (string CSV input) the CLI uses applies here. Empty array → empty
+    // string → clears the list.
+    const csv = rawIds.map((s) => String(s).trim()).filter(Boolean).join(',');
+    try {
+      const { setFederatedReadCore } = await import('./auth.ts');
+      const outcome = await setFederatedReadCore(sql, clientId, csv);
+      res.json({ outcome });
+    } catch (e) {
+      const msg = e instanceof Error ? e.message : String(e);
+      res.status(400).json({ error: 'mutation_failed', detail: msg });
+    }
+  });
+
  // ---------------------------------------------------------------------------
  // SSE live activity feed
  // ---------------------------------------------------------------------------
@@ -55,7 +55,7 @@ export interface AgentClientBindings {
 * `redirect_uri` containing `,`) would be parsed by Postgres as MULTIPLE
 * array elements, smuggling values past validation. See CSO finding #5.
 */
-function pgArray(arr: string[]): string {
+export function pgArray(arr: string[]): string {
  if (!arr || arr.length === 0) return '{}';
  const escaped = arr.map(s => `"${s.replace(/\\/g, '\\\\').replace(/"/g, '\\"')}"`);
  return `{${escaped.join(',')}}`;
@@ -18,7 +18,6 @@
 import type { BrainEngine } from '../engine.ts';
 import type { RemediationStep } from '../remediation-step.ts';
 import { makeRemediationStep } from '../remediation-step.ts';
-import { referenceExclusionSql } from '../reference-flag.ts';

 /** Shared shape returned by all four checks. */
 export interface OnboardCheckResult {
@@ -121,8 +120,7 @@ export async function checkEntityLinkCoverage(
    engine,
    `SELECT COUNT(*) AS count FROM pages
       WHERE type IN ('person', 'company', 'organization', 'entity')
-         AND deleted_at IS NULL
-         AND ${referenceExclusionSql()}`,
+         AND deleted_at IS NULL`,
  );

  if (totalEntities === 0) {
@@ -146,7 +144,6 @@ export async function checkEntityLinkCoverage(
       SELECT p.id FROM pages p ${sampleClause}
       WHERE p.type IN ('person', 'company', 'organization', 'entity')
         AND p.deleted_at IS NULL
-         AND ${referenceExclusionSql('p')}
         AND EXISTS (SELECT 1 FROM links l WHERE l.to_page_id = p.id)
     ) sub`,
  );
@@ -218,8 +215,7 @@ export async function checkTimelineCoverage(
    engine,
    `SELECT COUNT(*) AS count FROM pages
       WHERE type IN ('person', 'company', 'organization', 'entity')
-         AND deleted_at IS NULL
-         AND ${referenceExclusionSql()}`,
+         AND deleted_at IS NULL`,
  );

  if (totalEntities === 0) {
@@ -241,7 +237,6 @@ export async function checkTimelineCoverage(
       SELECT p.id FROM pages p ${sampleClause}
       WHERE p.type IN ('person', 'company', 'organization', 'entity')
         AND p.deleted_at IS NULL
-         AND ${referenceExclusionSql('p')}
         AND EXISTS (SELECT 1 FROM timeline_entries t WHERE t.page_id = p.id)
     ) sub`,
  );
@@ -14,7 +14,6 @@
 // also short-circuits (CI/scripted callers see nothing).

 import type { BrainEngine } from '../engine.ts';
-import { referenceExclusionSql } from '../reference-flag.ts';

 const NUDGE_BUDGET_MS = 3000;

@@ -58,8 +57,7 @@ export async function runInitNudge(engine: BrainEngine): Promise<void> {
      engine.executeRaw<{ count: string | number }>(
        `SELECT COUNT(*) AS count FROM pages
           WHERE type IN ('person', 'company', 'organization', 'entity')
-             AND deleted_at IS NULL
-             AND ${referenceExclusionSql()}`,
+             AND deleted_at IS NULL`,
        [],
        { signal: controller.signal },
      ),
@@ -67,7 +65,6 @@ export async function runInitNudge(engine: BrainEngine): Promise<void> {
        `SELECT COUNT(*) AS count FROM pages p
           WHERE p.type IN ('person', 'company', 'organization', 'entity')
             AND p.deleted_at IS NULL
-             AND ${referenceExclusionSql('p')}
             AND EXISTS (SELECT 1 FROM links l WHERE l.to_page_id = p.id)`,
        [],
        { signal: controller.signal },
@@ -76,7 +73,6 @@ export async function runInitNudge(engine: BrainEngine): Promise<void> {
        `SELECT COUNT(*) AS count FROM pages p
           WHERE p.type IN ('person', 'company', 'organization', 'entity')
             AND p.deleted_at IS NULL
-             AND ${referenceExclusionSql('p')}
             AND EXISTS (SELECT 1 FROM timeline_entries t WHERE t.page_id = p.id)`,
        [],
        { signal: controller.signal },
@@ -23,7 +23,6 @@ import { runMigrations } from './migrate.ts';
 import { PGLITE_SCHEMA_SQL, getPGLiteSchema } from './pglite-schema.ts';
 import { DEFAULT_EMBEDDING_MODEL, DEFAULT_EMBEDDING_DIMENSIONS } from './ai/defaults.ts';
 import { DELETE_BATCH_SIZE } from './engine-constants.ts';
-import { referenceExclusionSql } from './reference-flag.ts';
 import { MARKDOWN_CHUNKER_VERSION } from './chunkers/recursive.ts';
 import { acquireLock, releaseLock, type LockHandle } from './pglite-lock.ts';
 import { getFtsLanguage } from './fts-language.ts';
@@ -5203,7 +5202,6 @@ export class PGLiteEngine implements BrainEngine {
    const { rows: [h] } = await this.db.query(`
      WITH entity_pages AS (
        SELECT id, slug FROM pages WHERE type IN ('person', 'company')
-          AND ${referenceExclusionSql()}
      )
      SELECT
        (SELECT count(*) FROM pages) as page_count,
@@ -5320,12 +5320,7 @@ export class PostgresEngine implements BrainEngine {
    // is working as intended, not an orphan.
    const [h] = await sql`
      WITH entity_pages AS (
-        -- reference:true pages are exempt from coverage metrics.
-        -- Inlined (postgres.js tagged-template interpolation = bound param,
-        -- not raw SQL); keep in sync with referenceExclusionSql() in
-        -- reference-flag.ts.
        SELECT id, slug FROM pages WHERE type IN ('person', 'company')
-          AND (frontmatter->>'reference') IS DISTINCT FROM 'true'
      )
      SELECT
        (SELECT count(*) FROM pages) as page_count,
@@ -1,37 +0,0 @@
-// Reference / canon entities.
-//
-// A page with frontmatter `reference: true` is a reference-only entity — a
-// figure or organization imported from a book / article / external source that
-// the user reads ABOUT but does not actively interact with (e.g. Andy Grove,
-// Kleiner Perkins). It keeps its real `type` (`person` / `company`), so it stays
-// fully searchable, enrichable, linkable, and edge-resolvable — NOTHING about
-// retrieval changes.
-//
-// The ONLY behavior it opts out of is the entity *coverage* metrics
-// (`timeline_coverage`, `entity_link_coverage` + their onboard-nudge mirrors).
-// Those metrics nudge "this entity should accumulate dated history / inbound
-// links"; that assumption is right for people you actually deal with and wrong
-// for canon imports, which have no dated events in the user's life. Excluding
-// them keeps the metric honest and actionable instead of permanently red.
-//
-// Opt-in: absent / false / anything-but-true = normal entity (the default).
-// Set via `gbrain reference <slug>` (or hand-edit frontmatter).
-
-export const REFERENCE_FRONTMATTER_KEY = 'reference';
-
-/**
- * SQL predicate (true for NON-reference pages) to AND into entity-coverage
- * denominators AND numerators so the ratio stays consistent. JSONB `->>` yields
- * text; `IS DISTINCT FROM 'true'` treats absent (NULL) and every non-true value
- * as a normal counted entity. Backed by the GIN index on `pages.frontmatter`.
- *
- * @param alias optional table alias (e.g. 'p' for `pages p`); omit for bare `pages`.
- *
- * NOTE: postgres-engine.ts uses a postgres.js tagged template where `${}` is a
- * bound parameter, not raw SQL, so it inlines this predicate literally — keep
- * the two in sync.
- */
-export function referenceExclusionSql(alias = ''): string {
-  const col = alias ? `${alias}.frontmatter` : 'frontmatter';
-  return `(${col}->>'${REFERENCE_FRONTMATTER_KEY}') IS DISTINCT FROM 'true'`;
-}
@@ -0,0 +1,82 @@
+import { describe, it, expect, beforeAll, afterAll, beforeEach } from 'bun:test';
+import { PGLiteEngine } from '../src/core/pglite-engine.ts';
+import { resetPgliteState } from './helpers/reset-pglite.ts';
+import { queryAdminSources } from '../src/commands/serve-http.ts';
+import { buildSyncStatusReport } from '../src/commands/sync.ts';
+
+/**
+ * v0.41.29 Sources tab — `/admin/api/sources` endpoint SQL.
+ *
+ * The endpoint is a thin Express handler over `queryAdminSources` +
+ * `buildSyncStatusReport`; the source-selection SQL is the load-bearing
+ * surface (same pattern as test/admin-agents-spend.test.ts).
+ *
+ * Pinned behaviors:
+ *   - Excludes archived sources
+ *   - INCLUDES sources with null local_path (push-only brains: filtering
+ *     on local_path emptied the Sources tab + federation source-picker)
+ *   - JSONB config surfaces as an object, defaulting to {}
+ *   - Deterministic ORDER BY id
+ *   - buildSyncStatusReport accepts the rows (no disk I/O on null paths)
+ */
+
+let engine: PGLiteEngine;
+
+beforeAll(async () => {
+  engine = new PGLiteEngine();
+  await engine.connect({});
+  await engine.initSchema();
+});
+
+afterAll(async () => {
+  await engine.disconnect();
+});
+
+beforeEach(async () => {
+  await resetPgliteState(engine);
+});
+
+describe('queryAdminSources (/admin/api/sources SQL)', () => {
+  it('includes push-only sources with null local_path', async () => {
+    await engine.executeRaw(
+      `INSERT INTO sources (id, name, local_path, config)
+       VALUES ('push-only', 'push-only', NULL, '{}'::jsonb)`,
+    );
+    const sources = await queryAdminSources(engine);
+    const ids = sources.map((s) => s.id);
+    expect(ids).toContain('push-only');
+    expect(sources.find((s) => s.id === 'push-only')!.local_path).toBe(null);
+  });
+
+  it('excludes archived sources', async () => {
+    await engine.executeRaw(
+      `INSERT INTO sources (id, name, archived) VALUES ('gone', 'gone', true)`,
+    );
+    const sources = await queryAdminSources(engine);
+    expect(sources.map((s) => s.id)).not.toContain('gone');
+  });
+
+  it('surfaces JSONB config as an object and orders by id', async () => {
+    await engine.executeRaw(
+      `INSERT INTO sources (id, name, config)
+       VALUES ('bbb', 'bbb', '{"syncEnabled": true}'::jsonb),
+              ('aaa', 'aaa', '{}'::jsonb)`,
+    );
+    const sources = await queryAdminSources(engine);
+    const ids = sources.map((s) => s.id);
+    expect(ids.indexOf('aaa')).toBeLessThan(ids.indexOf('bbb'));
+    expect(sources.find((s) => s.id === 'bbb')!.config).toEqual({ syncEnabled: true });
+    expect(sources.find((s) => s.id === 'aaa')!.config).toEqual({});
+  });
+
+  it('buildSyncStatusReport accepts the rows (null local_path does not throw)', async () => {
+    await engine.executeRaw(
+      `INSERT INTO sources (id, name, local_path, config)
+       VALUES ('push-only', 'push-only', NULL, '{}'::jsonb)`,
+    );
+    const report = await buildSyncStatusReport(engine, await queryAdminSources(engine));
+    expect(report.schema_version).toBe(1);
+    const row = report.sources.find((s) => s.source_id === 'push-only');
+    expect(row).toBeDefined();
+  });
+});
@@ -0,0 +1,568 @@
+/**
+ * Tests for `gbrain auth grant-read|revoke-read|set-federated-read`.
+ *
+ * Pure helper: parseSourceCsv (no DB).
+ * DB-coupled: resolveClient, assertSourceExists, *Core fns — exercised
+ * against a real PGLite via the canonical block.
+ */
+import { describe, expect, test, beforeAll, afterAll, beforeEach } from 'bun:test';
+import { PGLiteEngine } from '../src/core/pglite-engine.ts';
+import { resetPgliteState } from './helpers/reset-pglite.ts';
+import { sqlQueryForEngine } from '../src/core/sql-query.ts';
+import { pgArray } from '../src/core/oauth-provider.ts';
+import {
+  parseSourceCsv,
+  resolveClient,
+  assertSourceExists,
+  grantReadCore,
+  revokeReadCore,
+  setFederatedReadCore,
+  extractDryRun,
+  sanitizeForTerminal,
+} from '../src/commands/auth.ts';
+
+let engine: PGLiteEngine;
+
+beforeAll(async () => {
+  engine = new PGLiteEngine();
+  await engine.connect({});
+  await engine.initSchema();
+});
+
+afterAll(async () => {
+  await engine.disconnect();
+});
+
+beforeEach(async () => {
+  await resetPgliteState(engine);
+});
+
+// ---------------------------------------------------------------------------
+// pure helpers
+// ---------------------------------------------------------------------------
+
+describe('parseSourceCsv', () => {
+  test('splits and trims', () => {
+    expect(parseSourceCsv('a,b,c')).toEqual(['a', 'b', 'c']);
+    expect(parseSourceCsv('  a  ,  b  ')).toEqual(['a', 'b']);
+  });
+
+  test('drops empty segments', () => {
+    expect(parseSourceCsv('a,,b,')).toEqual(['a', 'b']);
+    expect(parseSourceCsv(',,')).toEqual([]);
+    expect(parseSourceCsv('')).toEqual([]);
+  });
+
+  test('dedupes while preserving first-seen order', () => {
+    expect(parseSourceCsv('a,b,a,c,b')).toEqual(['a', 'b', 'c']);
+  });
+});
+
+describe('extractDryRun', () => {
+  test('absent flag → false', () => {
+    expect(extractDryRun(['alice', 'proj-x'])).toEqual({
+      dryRun: false,
+      rest: ['alice', 'proj-x'],
+    });
+  });
+
+  test('flag at end', () => {
+    expect(extractDryRun(['alice', 'proj-x', '--dry-run'])).toEqual({
+      dryRun: true,
+      rest: ['alice', 'proj-x'],
+    });
+  });
+
+  test('flag at start', () => {
+    expect(extractDryRun(['--dry-run', 'alice', 'proj-x'])).toEqual({
+      dryRun: true,
+      rest: ['alice', 'proj-x'],
+    });
+  });
+
+  test('flag in middle', () => {
+    expect(extractDryRun(['alice', '--dry-run', 'proj-x'])).toEqual({
+      dryRun: true,
+      rest: ['alice', 'proj-x'],
+    });
+  });
+
+  test('no args', () => {
+    expect(extractDryRun([])).toEqual({ dryRun: false, rest: [] });
+  });
+});
+
+// ---------------------------------------------------------------------------
+// DB-coupled
+// ---------------------------------------------------------------------------
+
+async function seedSource(id: string): Promise<void> {
+  const sql = sqlQueryForEngine(engine);
+  await sql`INSERT INTO sources (id, name) VALUES (${id}, ${id}) ON CONFLICT (id) DO NOTHING`;
+}
+
+async function seedClient(name: string, federated: string[] = []): Promise<string> {
+  // Ensure write source FK is satisfied — every seeded client points at 'default'.
+  await seedSource('default');
+  const sql = sqlQueryForEngine(engine);
+  const clientId = `gbrain_cl_test_${name}_${Date.now()}_${Math.random().toString(16).slice(2, 8)}`;
+  const fedLit = pgArray(federated);
+  await sql`
+    INSERT INTO oauth_clients (client_id, client_name, client_secret_hash,
+                               redirect_uris, grant_types, scope,
+                               client_id_issued_at, source_id, federated_read)
+    VALUES (${clientId}, ${name}, ${'dummy-hash'},
+            ${pgArray([])}, ${pgArray(['client_credentials'])}, ${'read'},
+            ${Date.now()}, ${'default'}, ${fedLit})
+  `;
+  return clientId;
+}
+
+async function readFederated(clientId: string): Promise<string[]> {
+  const sql = sqlQueryForEngine(engine);
+  const rows = await sql`SELECT federated_read FROM oauth_clients WHERE client_id = ${clientId}`;
+  const fed = rows[0]?.federated_read;
+  return Array.isArray(fed) ? (fed as string[]).map(String) : [];
+}
+
+describe('resolveClient', () => {
+  test('matches by client_id', async () => {
+    await seedSource('default');
+    const id = await seedClient('alice', ['default']);
+    const sql = sqlQueryForEngine(engine);
+    const c = await resolveClient(sql, id);
+    expect(c.client_name).toBe('alice');
+    expect(c.federated_read).toEqual(['default']);
+  });
+
+  test('matches by client_name', async () => {
+    await seedSource('default');
+    await seedClient('alice', ['default']);
+    const sql = sqlQueryForEngine(engine);
+    const c = await resolveClient(sql, 'alice');
+    expect(c.client_name).toBe('alice');
+  });
+
+  test('errors loudly on no-match', async () => {
+    const sql = sqlQueryForEngine(engine);
+    await expect(resolveClient(sql, 'nobody')).rejects.toThrow(/No active OAuth client found/);
+  });
+
+  test('errors loudly on ambiguous client_name', async () => {
+    await seedSource('default');
+    await seedClient('bob', ['default']);
+    await seedClient('bob', ['default']);
+    const sql = sqlQueryForEngine(engine);
+    await expect(resolveClient(sql, 'bob')).rejects.toThrow(/Multiple active OAuth clients named/);
+  });
+
+  test('null source_id is preserved as null (legacy row tolerance)', async () => {
+    const sql = sqlQueryForEngine(engine);
+    const clientId = `gbrain_cl_test_null_${Date.now()}`;
+    await sql`
+      INSERT INTO oauth_clients (client_id, client_name, client_secret_hash,
+                                 redirect_uris, grant_types, scope,
+                                 client_id_issued_at, source_id, federated_read)
+      VALUES (${clientId}, ${'legacy'}, ${'dummy'},
+              ${pgArray([])}, ${pgArray(['client_credentials'])}, ${'read'},
+              ${Date.now()}, ${null}, ${pgArray([])})
+    `;
+    const c = await resolveClient(sql, clientId);
+    expect(c.source_id).toBeNull();
+    expect(c.federated_read).toEqual([]);
+  });
+});
+
+describe('assertSourceExists', () => {
+  test('passes when present', async () => {
+    await seedSource('proj-x');
+    const sql = sqlQueryForEngine(engine);
+    await expect(assertSourceExists(sql, 'proj-x')).resolves.toBeUndefined();
+  });
+
+  test('throws with paste-ready hint when missing', async () => {
+    const sql = sqlQueryForEngine(engine);
+    await expect(assertSourceExists(sql, 'ghost')).rejects.toThrow(
+      /Source "ghost" does not exist.*gbrain sources add ghost/s,
+    );
+  });
+});
+
+describe('grantReadCore', () => {
+  test('appends when not present and persists', async () => {
+    await seedSource('default');
+    await seedSource('proj-x');
+    const id = await seedClient('alice', ['default']);
+    const sql = sqlQueryForEngine(engine);
+    const outcome = await grantReadCore(sql, 'alice', 'proj-x');
+    expect(outcome.kind).toBe('updated');
+    if (outcome.kind === 'updated') {
+      expect(outcome.before).toEqual(['default']);
+      expect(outcome.after).toEqual(['default', 'proj-x']);
+    }
+    expect(await readFederated(id)).toEqual(['default', 'proj-x']);
+  });
+
+  test('is idempotent — second call is a noop, list unchanged', async () => {
+    await seedSource('default');
+    await seedSource('proj-x');
+    const id = await seedClient('alice', ['default']);
+    const sql = sqlQueryForEngine(engine);
+    await grantReadCore(sql, 'alice', 'proj-x');
+    const outcome = await grantReadCore(sql, 'alice', 'proj-x');
+    expect(outcome.kind).toBe('noop');
+    if (outcome.kind === 'noop') {
+      expect(outcome.reason).toBe('already-granted');
+    }
+    expect(await readFederated(id)).toEqual(['default', 'proj-x']);
+  });
+
+  test('refuses unknown source (fails BEFORE mutating)', async () => {
+    await seedSource('default');
+    const id = await seedClient('alice', ['default']);
+    const sql = sqlQueryForEngine(engine);
+    await expect(grantReadCore(sql, 'alice', 'ghost')).rejects.toThrow(/does not exist/);
+    expect(await readFederated(id)).toEqual(['default']);
+  });
+
+  test('refuses unknown client', async () => {
+    const sql = sqlQueryForEngine(engine);
+    await expect(grantReadCore(sql, 'nobody', 'whatever')).rejects.toThrow(/No active OAuth client found/);
+  });
+
+  test('accepts client_id resolution too', async () => {
+    await seedSource('default');
+    await seedSource('proj-x');
+    const id = await seedClient('alice', ['default']);
+    const sql = sqlQueryForEngine(engine);
+    await grantReadCore(sql, id, 'proj-x');
+    expect(await readFederated(id)).toEqual(['default', 'proj-x']);
+  });
+
+  test('rejects malformed source_id BEFORE existence check (Codex finding #3)', async () => {
+    await seedSource('default');
+    const id = await seedClient('alice', ['default']);
+    const sql = sqlQueryForEngine(engine);
+    // Even with a row in `sources` having a weird id, the validator at the
+    // boundary refuses. Closes the "manual SQL plants a row, CLI lets it
+    // become unmanageable in federated_read" vector.
+    await sql`INSERT INTO sources (id, name) VALUES (${'has,"weird"-bits'}, ${'weird'})`;
+    await expect(grantReadCore(sql, 'alice', 'has,"weird"-bits')).rejects.toThrow(/Invalid source_id/);
+    // DB unchanged.
+    expect(await readFederated(id)).toEqual(['default']);
+  });
+});
+
+describe('revokeReadCore', () => {
+  test('removes when present', async () => {
+    await seedSource('default');
+    await seedSource('proj-x');
+    const id = await seedClient('alice', ['default', 'proj-x']);
+    const sql = sqlQueryForEngine(engine);
+    const outcome = await revokeReadCore(sql, 'alice', 'proj-x');
+    expect(outcome.kind).toBe('updated');
+    expect(await readFederated(id)).toEqual(['default']);
+  });
+
+  test('is idempotent — second call is a noop, list unchanged', async () => {
+    await seedSource('default');
+    const id = await seedClient('alice', ['default']);
+    const sql = sqlQueryForEngine(engine);
+    const outcome = await revokeReadCore(sql, 'alice', 'ghost-source');
+    expect(outcome.kind).toBe('noop');
+    if (outcome.kind === 'noop') {
+      expect(outcome.reason).toBe('not-present');
+    }
+    expect(await readFederated(id)).toEqual(['default']);
+  });
+
+  test('allows clearing the list down to empty (no implicit guard)', async () => {
+    await seedSource('default');
+    const id = await seedClient('alice', ['default']);
+    const sql = sqlQueryForEngine(engine);
+    await revokeReadCore(sql, 'alice', 'default');
+    expect(await readFederated(id)).toEqual([]);
+  });
+
+  test('does NOT validate the source exists — operator may revoke stale references', async () => {
+    await seedSource('default');
+    // federated_read carries 'proj-x' but the source row was deleted.
+    const id = await seedClient('alice', ['default', 'proj-x']);
+    const sql = sqlQueryForEngine(engine);
+    const outcome = await revokeReadCore(sql, 'alice', 'proj-x');
+    expect(outcome.kind).toBe('updated');
+    expect(await readFederated(id)).toEqual(['default']);
+  });
+});
+
+describe('setFederatedReadCore', () => {
+  test('replaces list wholesale', async () => {
+    await seedSource('a');
+    await seedSource('b');
+    await seedSource('c');
+    const id = await seedClient('alice', ['a']);
+    const sql = sqlQueryForEngine(engine);
+    const outcome = await setFederatedReadCore(sql, 'alice', 'b,c');
+    expect(outcome.kind).toBe('updated');
+    expect(await readFederated(id)).toEqual(['b', 'c']);
+  });
+
+  test('dedupes CSV input', async () => {
+    await seedSource('a');
+    await seedSource('b');
+    const id = await seedClient('alice', []);
+    const sql = sqlQueryForEngine(engine);
+    await setFederatedReadCore(sql, 'alice', 'a,b,a,b,a');
+    expect(await readFederated(id)).toEqual(['a', 'b']);
+  });
+
+  test('empty string clears the list', async () => {
+    await seedSource('a');
+    const id = await seedClient('alice', ['a']);
+    const sql = sqlQueryForEngine(engine);
+    await setFederatedReadCore(sql, 'alice', '');
+    expect(await readFederated(id)).toEqual([]);
+  });
+
+  test('noop when result equals current list', async () => {
+    await seedSource('a');
+    await seedSource('b');
+    const id = await seedClient('alice', ['a', 'b']);
+    const sql = sqlQueryForEngine(engine);
+    const outcome = await setFederatedReadCore(sql, 'alice', 'a,b');
+    expect(outcome.kind).toBe('noop');
+    if (outcome.kind === 'noop') {
+      expect(outcome.reason).toBe('same-list');
+    }
+    expect(await readFederated(id)).toEqual(['a', 'b']);
+  });
+
+  test('refuses unknown source (fails BEFORE mutating)', async () => {
+    await seedSource('a');
+    const id = await seedClient('alice', ['a']);
+    const sql = sqlQueryForEngine(engine);
+    await expect(setFederatedReadCore(sql, 'alice', 'a,ghost')).rejects.toThrow(/does not exist/);
+    // Original list preserved.
+    expect(await readFederated(id)).toEqual(['a']);
+  });
+
+  test('order in CSV is the order persisted', async () => {
+    await seedSource('a');
+    await seedSource('b');
+    await seedSource('c');
+    const id = await seedClient('alice', ['a']);
+    const sql = sqlQueryForEngine(engine);
+    await setFederatedReadCore(sql, 'alice', 'c,a,b');
+    expect(await readFederated(id)).toEqual(['c', 'a', 'b']);
+  });
+});
+
+// ---------------------------------------------------------------------------
+// --dry-run semantics
+// ---------------------------------------------------------------------------
+
+// ---------------------------------------------------------------------------
+// Codex fixes: soft-delete filter, atomic-SQL race-safety, sanitizer
+// ---------------------------------------------------------------------------
+
+describe('sanitizeForTerminal', () => {
+  test('preserves printable ASCII unchanged', () => {
+    expect(sanitizeForTerminal('alice')).toBe('alice');
+    expect(sanitizeForTerminal('a b-c_d.e/f@g')).toBe('a b-c_d.e/f@g');
+  });
+
+  test('escapes ANSI escape sequences', () => {
+    expect(sanitizeForTerminal('\x1b[2J')).toBe('\\x1b[2J');
+    expect(sanitizeForTerminal('\x1b]0;TITLE\x07')).toBe('\\x1b]0;TITLE\\x07');
+  });
+
+  test('escapes ALL C0 controls including tab and newline', () => {
+    // Codex re-review: preserving \n lets a DCR-registered name spoof
+    // additional rows in list-clients output. Tab spoofs field separators.
+    // Both are now escaped.
+    expect(sanitizeForTerminal('\x00\x07\x08')).toBe('\\x00\\x07\\x08');
+    expect(sanitizeForTerminal('line1\nline2')).toBe('line1\\x0aline2');
+    expect(sanitizeForTerminal('col1\tcol2')).toBe('col1\\x09col2');
+  });
+
+  test('escapes DEL and C1 controls', () => {
+    expect(sanitizeForTerminal('\x7f')).toBe('\\x7f');
+    expect(sanitizeForTerminal('\x9b[31m')).toBe('\\x9b[31m');
+  });
+
+  test('passes through unicode', () => {
+    expect(sanitizeForTerminal('café')).toBe('café');
+    expect(sanitizeForTerminal('日本語')).toBe('日本語');
+  });
+});
+
+describe('soft-delete filter (Codex finding #2)', () => {
+  async function softDeleteClient(clientId: string): Promise<void> {
+    const sql = sqlQueryForEngine(engine);
+    await sql`UPDATE oauth_clients SET deleted_at = now() WHERE client_id = ${clientId}`;
+  }
+
+  test('resolveClient hides soft-deleted clients by default', async () => {
+    await seedSource('default');
+    const id = await seedClient('alice', ['default']);
+    await softDeleteClient(id);
+    const sql = sqlQueryForEngine(engine);
+    await expect(resolveClient(sql, 'alice')).rejects.toThrow(/No active OAuth client found/);
+    await expect(resolveClient(sql, id)).rejects.toThrow(/No active OAuth client found/);
+  });
+
+  test('resolveClient with includeDeleted finds soft-deleted clients', async () => {
+    await seedSource('default');
+    const id = await seedClient('alice', ['default']);
+    await softDeleteClient(id);
+    const sql = sqlQueryForEngine(engine);
+    const c = await resolveClient(sql, id, { includeDeleted: true });
+    expect(c.client_name).toBe('alice');
+    expect(c.deleted_at).not.toBeNull();
+  });
+
+  test('grantReadCore refuses to mutate soft-deleted clients', async () => {
+    await seedSource('default');
+    await seedSource('proj-x');
+    const id = await seedClient('alice', ['default']);
+    await softDeleteClient(id);
+    const sql = sqlQueryForEngine(engine);
+    await expect(grantReadCore(sql, 'alice', 'proj-x')).rejects.toThrow(/No active OAuth client found/);
+    expect(await readFederated(id)).toEqual(['default']);
+  });
+
+  test('revokeReadCore refuses to mutate soft-deleted clients', async () => {
+    await seedSource('default');
+    const id = await seedClient('alice', ['default']);
+    await softDeleteClient(id);
+    const sql = sqlQueryForEngine(engine);
+    await expect(revokeReadCore(sql, 'alice', 'default')).rejects.toThrow(/No active OAuth client found/);
+    expect(await readFederated(id)).toEqual(['default']);
+  });
+
+  test('two clients with same name but only one active resolves to the active one', async () => {
+    await seedSource('default');
+    // Seed two clients with the same name; soft-delete the older one.
+    const sql = sqlQueryForEngine(engine);
+    const oldId = await seedClient('alice', ['default']);
+    await softDeleteClient(oldId);
+    const newId = await seedClient('alice', ['default']);  // same name, new row
+    const c = await resolveClient(sql, 'alice');
+    expect(c.client_id).toBe(newId);  // active row wins; ambiguity error suppressed
+  });
+});
+
+describe('atomic SQL race-safety (Codex finding #1, HIGH)', () => {
+  test('grant+revoke serialize at row-lock — sensitive stays revoked', async () => {
+    await seedSource('default');
+    await seedSource('sensitive');
+    await seedSource('harmless');
+    const id = await seedClient('alice', ['default', 'sensitive']);
+    const sql = sqlQueryForEngine(engine);
+
+    // Simulate concurrent revoke(sensitive) + grant(harmless). Real concurrency
+    // would race at the JS event loop boundary; here we await sequentially but
+    // each call goes through the ATOMIC SQL path. The contract: regardless of
+    // ordering, the final state has sensitive REMOVED and harmless ADDED.
+    await revokeReadCore(sql, 'alice', 'sensitive');
+    await grantReadCore(sql, 'alice', 'harmless');
+    const final1 = await readFederated(id);
+    expect(final1.sort()).toEqual(['default', 'harmless']);
+
+    // Reverse order, same final state. The pre-fix read-modify-write shape
+    // would have produced ['default', 'sensitive', 'harmless'] here (the
+    // resurrection bug Codex caught).
+    const id2 = await seedClient('bob', ['default', 'sensitive']);
+    await grantReadCore(sql, 'bob', 'harmless');
+    await revokeReadCore(sql, 'bob', 'sensitive');
+    const final2 = await readFederated(id2);
+    expect(final2.sort()).toEqual(['default', 'harmless']);
+  });
+
+  test('grant uses RETURNING to surface the post-write state', async () => {
+    await seedSource('default');
+    await seedSource('proj-x');
+    await seedClient('alice', ['default']);
+    const sql = sqlQueryForEngine(engine);
+    const outcome = await grantReadCore(sql, 'alice', 'proj-x');
+    expect(outcome.kind).toBe('updated');
+    if (outcome.kind === 'updated') {
+      // The `after` came from RETURNING, not from computing prev+sourceId
+      // in JS — proves the atomic path returned authoritative state.
+      expect(outcome.after).toEqual(['default', 'proj-x']);
+    }
+  });
+
+  test('grant noop path still survives without writing', async () => {
+    await seedSource('default');
+    const id = await seedClient('alice', ['default']);
+    const sql = sqlQueryForEngine(engine);
+    const outcome = await grantReadCore(sql, 'alice', 'default');
+    expect(outcome.kind).toBe('noop');
+    if (outcome.kind === 'noop') expect(outcome.reason).toBe('already-granted');
+    expect(await readFederated(id)).toEqual(['default']);
+  });
+});
+
+describe('dryRun mode', () => {
+  test('grantReadCore returns "updated" outcome but skips the write', async () => {
+    await seedSource('default');
+    await seedSource('proj-x');
+    const id = await seedClient('alice', ['default']);
+    const sql = sqlQueryForEngine(engine);
+    const outcome = await grantReadCore(sql, 'alice', 'proj-x', { dryRun: true });
+    expect(outcome.kind).toBe('updated');
+    if (outcome.kind === 'updated') {
+      expect(outcome.before).toEqual(['default']);
+      expect(outcome.after).toEqual(['default', 'proj-x']);
+    }
+    // Crucially: the DB row is UNCHANGED.
+    expect(await readFederated(id)).toEqual(['default']);
+  });
+
+  test('revokeReadCore returns "updated" outcome but skips the write', async () => {
+    await seedSource('default');
+    await seedSource('proj-x');
+    const id = await seedClient('alice', ['default', 'proj-x']);
+    const sql = sqlQueryForEngine(engine);
+    const outcome = await revokeReadCore(sql, 'alice', 'proj-x', { dryRun: true });
+    expect(outcome.kind).toBe('updated');
+    expect(await readFederated(id)).toEqual(['default', 'proj-x']);
+  });
+
+  test('setFederatedReadCore returns "updated" outcome but skips the write', async () => {
+    await seedSource('a');
+    await seedSource('b');
+    await seedSource('c');
+    const id = await seedClient('alice', ['a']);
+    const sql = sqlQueryForEngine(engine);
+    const outcome = await setFederatedReadCore(sql, 'alice', 'b,c', { dryRun: true });
+    expect(outcome.kind).toBe('updated');
+    expect(await readFederated(id)).toEqual(['a']);
+  });
+
+  test('noop outcomes are surfaced identically with or without dryRun', async () => {
+    await seedSource('default');
+    await seedSource('proj-x');
+    await seedClient('alice', ['default', 'proj-x']);
+    const sql = sqlQueryForEngine(engine);
+    const live = await grantReadCore(sql, 'alice', 'proj-x', { dryRun: false });
+    const dry = await grantReadCore(sql, 'alice', 'proj-x', { dryRun: true });
+    expect(live.kind).toBe('noop');
+    expect(dry.kind).toBe('noop');
+  });
+
+  test('errors still fire in dryRun (operator sees the problem before commit)', async () => {
+    await seedSource('default');
+    const id = await seedClient('alice', ['default']);
+    const sql = sqlQueryForEngine(engine);
+    await expect(
+      grantReadCore(sql, 'alice', 'ghost', { dryRun: true }),
+    ).rejects.toThrow(/does not exist/);
+    await expect(
+      grantReadCore(sql, 'nobody', 'default', { dryRun: true }),
+    ).rejects.toThrow(/No active OAuth client found/);
+    // DB unchanged.
+    expect(await readFederated(id)).toEqual(['default']);
+  });
+});
@@ -174,6 +174,29 @@ describe('parseRegisterClientArgs', () => {
  });

  describe('error cases', () => {
+    test('--source with malformed id throws (validates source_id shape — codex re-review)', () => {
+      // Defense for the "register-client seeds an unmanageable
+      // federated_read entry" vector. assertValidSourceId fires before the
+      // function returns so DB never sees a row with bad source scope.
+      expect(() => parseRegisterClientArgs(['--source', 'has,weird,bits'])).toThrow(/Invalid source_id/);
+      expect(() => parseRegisterClientArgs(['--source', 'UPPER'])).toThrow(/Invalid source_id/);
+      expect(() => parseRegisterClientArgs(['--source', ''])).toThrow(/Invalid source_id|requires a value/);
+    });
+
+    test('--federated-read with any malformed id throws', () => {
+      // Single-item bad.
+      expect(() => parseRegisterClientArgs(['--federated-read', 'bad,source!'])).toThrow(/Invalid source_id/);
+      // Mixed valid + invalid — fails on the first bad one.
+      expect(() => parseRegisterClientArgs(['--federated-read', 'good,bad source'])).toThrow(/Invalid source_id/);
+    });
+
+    test('--source default + --federated-read default,team passes (regression — common case)', () => {
+      // Sanity: the canonical real-world invocation still parses cleanly.
+      const out = parseRegisterClientArgs(['--source', 'default', '--federated-read', 'default,team']);
+      expect(out.sourceId).toBe('default');
+      expect(out.federatedRead).toEqual(['default', 'team']);
+    });
+
    test('--redirect-uri without value → throws', () => {
      expect(() => parseRegisterClientArgs(['--redirect-uri'])).toThrow(/requires a value/);
    });
@@ -1,154 +0,0 @@
-import { describe, expect, test } from 'bun:test';
-import { referenceExclusionSql, REFERENCE_FRONTMATTER_KEY } from '../src/core/reference-flag.ts';
-import { applyReferenceFrontmatter } from '../src/commands/reference.ts';
-
-describe('referenceExclusionSql', () => {
-  test('bare pages (no alias)', () => {
-    expect(referenceExclusionSql()).toBe(`(frontmatter->>'reference') IS DISTINCT FROM 'true'`);
-  });
-  test('aliased', () => {
-    expect(referenceExclusionSql('p')).toBe(`(p.frontmatter->>'reference') IS DISTINCT FROM 'true'`);
-  });
-  test('key constant', () => {
-    expect(REFERENCE_FRONTMATTER_KEY).toBe('reference');
-  });
-});
-
-describe('applyReferenceFrontmatter', () => {
-  const page = `---\ntitle: Andy Grove\ntype: person\ntags: []\n---\n\n# Andy Grove\n\nBody.`;
-
-  test('adds reference: true to an existing frontmatter block', () => {
-    const out = applyReferenceFrontmatter(page, true);
-    expect(out).toContain('reference: true');
-    expect(out).toContain('type: person');   // other keys preserved
-    expect(out).toContain('# Andy Grove');    // body preserved
-  });
-
-  test('is idempotent — does not duplicate the key', () => {
-    const once = applyReferenceFrontmatter(page, true);
-    const twice = applyReferenceFrontmatter(once, true);
-    expect(twice).toBe(once);
-    expect(twice.match(/reference: true/g)).toHaveLength(1);
-  });
-
-  test('replaces a stale reference: false with true', () => {
-    const off = `---\ntype: person\nreference: false\n---\n\nBody.`;
-    const out = applyReferenceFrontmatter(off, true);
-    expect(out).toContain('reference: true');
-    expect(out).not.toContain('reference: false');
-  });
-
-  test('--unset removes the key', () => {
-    const on = applyReferenceFrontmatter(page, true);
-    const off = applyReferenceFrontmatter(on, false);
-    expect(off).not.toContain('reference:');
-    expect(off).toContain('type: person');
-  });
-
-  test('--unset on a page without the key is a no-op', () => {
-    expect(applyReferenceFrontmatter(page, false)).toBe(page);
-  });
-
-  test('setting on a frontmatter-less page prepends a block', () => {
-    const raw = '# Just a heading\n\nNo frontmatter here.';
-    const out = applyReferenceFrontmatter(raw, true);
-    expect(out.startsWith('---\nreference: true\n---\n')).toBe(true);
-    expect(out).toContain('# Just a heading');
-  });
-
-  test('preserves body containing YAML-special chars', () => {
-    const tricky = `---\ntype: person\n---\n\nText with $& and $1 literals.`;
-    const out = applyReferenceFrontmatter(tricky, true);
-    expect(out).toContain('Text with $& and $1 literals.');
-    expect(out).toContain('reference: true');
-  });
-});
-
-// ── e2e: getHealth exemption + (source_id, slug)-scoped JSONB write ─────────
-
-import { afterAll, beforeAll } from 'bun:test';
-import * as fs from 'node:fs';
-import * as os from 'node:os';
-import * as path from 'node:path';
-import { PGLiteEngine } from '../src/core/pglite-engine.ts';
-import { runReference } from '../src/commands/reference.ts';
-import { withEnv } from './helpers/with-env.ts';
-
-describe('reference flag e2e (PGLite)', () => {
-  let engine: PGLiteEngine;
-  let brainDir: string;
-
-  beforeAll(async () => {
-    engine = new PGLiteEngine();
-    await engine.connect({ database_url: '' });
-    await engine.initSchema();
-
-    brainDir = fs.mkdtempSync(path.join(os.tmpdir(), 'gbrain-ref-'));
-    fs.mkdirSync(path.join(brainDir, 'people'), { recursive: true });
-    fs.writeFileSync(
-      path.join(brainDir, 'people/andy-grove.md'),
-      '---\ntitle: Andy Grove\ntype: person\n---\n\n# Andy Grove\n',
-      'utf8',
-    );
-
-    await engine.executeRaw(
-      `INSERT INTO sources (id, name, local_path, config, created_at)
-       VALUES ('src-a', 'a', $1, '{}'::jsonb, now()), ('src-b', 'b', NULL, '{}'::jsonb, now())`,
-      [brainDir],
-    );
-    // Same slug in BOTH sources — the write must only touch src-a.
-    await engine.putPage('people/andy-grove', {
-      type: 'person', title: 'Andy Grove', compiled_truth: 'canon figure',
-    }, { sourceId: 'src-a' });
-    await engine.putPage('people/andy-grove', {
-      type: 'person', title: 'Andy Grove', compiled_truth: 'other-source twin',
-    }, { sourceId: 'src-b' });
-    // A normal contact WITH a timeline entry, so coverage has a live numerator.
-    const contact = await engine.putPage('people/alice-example', {
-      type: 'person', title: 'Alice Example', compiled_truth: 'real contact',
-    }, { sourceId: 'src-a' });
-    await engine.executeRaw(
-      `INSERT INTO timeline_entries (page_id, date, summary) VALUES ($1, '2026-01-01', 'met')`,
-      [contact.id],
-    );
-  });
-
-  afterAll(async () => {
-    await engine.disconnect();
-    fs.rmSync(brainDir, { recursive: true, force: true });
-  });
-
-  test('runReference scopes the JSONB write to the resolved (source_id, slug)', async () => {
-    await withEnv({ GBRAIN_SOURCE: undefined }, () =>
-      runReference(engine, ['people/andy-grove', '--brain', brainDir]));
-
-    const rows = await engine.executeRaw<{ source_id: string; ref: string | null }>(
-      `SELECT source_id, frontmatter->>'reference' AS ref FROM pages WHERE slug = 'people/andy-grove' ORDER BY source_id`,
-    );
-    expect(rows).toEqual([
-      { source_id: 'src-a', ref: 'true' },
-      { source_id: 'src-b', ref: null },   // twin in the other source untouched
-    ]);
-    // Durable half: frontmatter on disk got the flag too.
-    expect(fs.readFileSync(path.join(brainDir, 'people/andy-grove.md'), 'utf8'))
-      .toContain('reference: true');
-  });
-
-  test('getHealth exempts reference pages from timeline/link coverage', async () => {
-    const health = await engine.getHealth();
-    // 3 person pages; the 2 reference-less twins would drag coverage to 1/3.
-    // With the src-a twin marked reference, denominator = 2 (alice + src-b twin).
-    expect(health.timeline_coverage).toBeCloseTo(0.5);
-  });
-
-  test('unset restores the page to a normal counted entity', async () => {
-    await withEnv({ GBRAIN_SOURCE: undefined }, () =>
-      runReference(engine, ['people/andy-grove', '--unset', '--brain', brainDir]));
-    const rows = await engine.executeRaw<{ ref: string | null }>(
-      `SELECT frontmatter->>'reference' AS ref FROM pages WHERE slug = 'people/andy-grove' AND source_id = 'src-a'`,
-    );
-    expect(rows[0].ref).toBeNull();
-    const health = await engine.getHealth();
-    expect(health.timeline_coverage).toBeCloseTo(1 / 3);
-  });
-});