test(dream): conform dream-dir-source-stamp to canonical PGLite isolation pattern

check:test-isolation R3/R4 flagged the new test file: engine was created
in beforeEach (outside beforeAll) and never disconnected in afterAll.
Switch to the canonical shared-engine pattern (beforeAll create,
beforeEach resetPgliteState, afterAll disconnect) per
test/helpers/reset-pglite.ts.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

src/commands/autopilot.ts

@@ -38,6 +38,7 @@ import { logSelfUpgrade } from '../core/audit/self-upgrade-audit.ts';
 import { detectInstallMethod } from './upgrade.ts';
 import { evaluateQuietHours } from '../core/minions/quiet-hours.ts';
 import { inspectLock } from '../core/db-lock.ts';
+import { registerCleanup } from '../core/process-cleanup.ts';
 
 /**
  * v0.37.7.0 #1162 — classify autopilot reconnect-loop errors.
@@ -433,6 +434,37 @@ export async function runAutopilot(engine: BrainEngine, args: string[]) {
   let stopping = false;
   let childSupervisor: ChildWorkerSupervisor | null = null;
 
+  // #1872: graceful engine shutdown. On PGLite the cycle steps run INLINE in
+  // this process, so a hard `process.exit` mid-write (systemctl stop →
+  // SIGTERM) kills WASM Postgres with the WAL dirty and can corrupt the
+  // brain. Two exit paths must both close the engine:
+  //   - autopilot's own shutdown() below (owns SIGINT + internal stops like
+  //     max_crashes / cycle-failure-cap), and
+  //   - process-cleanup's SIGTERM handler (installed at cli.ts module load;
+  //     it runs the cleanup registry with a 3s deadline and then exits) —
+  //     which is why closeEngine is ALSO registered there.
+  // closeEngine aborts the in-flight inline cycle (runCycle checks the
+  // signal between phases and threads it into phase sub-work), gives it a
+  // short bounded window to wind down, then disconnects. PGLite's
+  // disconnect() drains the pending query and checkpoints before closing;
+  // a second call is a no-op (disconnect snapshots + nulls the handle), so
+  // both paths firing is safe.
+  const shutdownAbort = new AbortController();
+  let inflightInlineCycle: Promise<unknown> | null = null;
+  const closeEngine = async () => {
+    shutdownAbort.abort(new Error('autopilot shutdown'));
+    if (inflightInlineCycle) {
+      // ponytail: 2s cap keeps us inside process-cleanup's 3s deadline; a
+      // between-phase abort resolves instantly, a mid-phase one may not.
+      await Promise.race([
+        inflightInlineCycle.catch(() => { /* cycle errors already logged by the loop */ }),
+        new Promise((r) => setTimeout(r, 2_000)),
+      ]);
+    }
+    try { await engine.disconnect(); } catch { /* best-effort */ }
+  };
+  const deregisterEngineClose = registerCleanup('autopilot-engine-close', closeEngine);
+
   if (spawnManagedWorker) {
     const cliPath = resolveGbrainCliPath();
     // Cgroup-aware auto-sized RSS watchdog cap (issue #1678). The old flat
@@ -520,6 +552,10 @@ export async function runAutopilot(engine: BrainEngine, args: string[]) {
         childSupervisor.killChild('SIGKILL');
       }
     }
+    // #1872: abort the in-flight inline cycle and close the engine BEFORE
+    // process.exit — a hard exit mid-write corrupts PGLite's WASM Postgres.
+    await closeEngine();
+    deregisterEngineClose();
     try { unlinkSync(lockPath); } catch { /* already gone */ }
     process.exit(0);
   };
@@ -1008,16 +1044,21 @@ export async function runAutopilot(engine: BrainEngine, args: string[]) {
       // path's phase set). Now both converge on the same primitive.
       try {
         const { runCycle } = await import('../core/cycle.ts');
-        const report = await runCycle(engine, {
+        // #1872: track the promise so closeEngine can drain it on shutdown,
+        // and pass the abort signal so the cycle winds down between phases.
+        const cyclePromise = runCycle(engine, {
           brainDir: repoPath,
           // Autopilot daemon path: pulls by default (matches
           // pre-v0.17 autopilot behavior). CLI dream defaults false
           // for cron safety; that choice is scoped to dream only.
           pull: true,
+          signal: shutdownAbort.signal,
           yieldBetweenPhases: async () => {
             await new Promise(r => setImmediate(r));
           },
         });
+        inflightInlineCycle = cyclePromise;
+        const report = await cyclePromise.finally(() => { inflightInlineCycle = null; });
         // Only 'failed' (every attempted phase failed) trips the autopilot
         // circuit breaker. 'partial' means at least one phase warned or
         // failed while others ran — that's a soft signal, not a fatal

src/commands/dream.ts

@@ -26,6 +26,7 @@
 import type { BrainEngine } from '../core/engine.ts';
 import {
   runCycle,
+  resolveSourceForDir,
   ALL_PHASES,
   type CyclePhase,
   type CycleReport,
@@ -380,9 +381,9 @@ Options:
 
   --source <id>       Scope the cycle to one source so doctor's
                       cycle_freshness check sees a fresh stamp on
-                      completion. Without this, gbrain dream's
-                      timestamp never lands and federated brains
-                      see "stale cycle" forever.
+                      completion. When omitted, gbrain derives the
+                      source from --dir / the configured checkout
+                      when it matches a source's local_path (#1869).
   --source-id <id>    Alias for --source. Matches the v0.37.7.0+
                       naming used by import/extract/graph-query.
 
@@ -634,6 +635,25 @@ export async function runDream(engine: BrainEngine | null, args: string[]): Prom
     );
     process.exit(1);
   }
+
+  // #1869: a path-scoped run (--dir, or the configured sync.repo_path) whose
+  // directory matches a registered source's local_path IS that source's cycle
+  // — derive the source id so runCycle writes last_source_cycle_at /
+  // last_full_cycle_at on success and doctor's cycle_freshness check stops
+  // reading perpetually stale. Explicit --source still wins (resolved above).
+  // Fixed here at the command level, NOT in runCycle's stamp gate, so legacy
+  // global callers (autopilot-global-maintenance runs GLOBAL_PHASES with a
+  // brainDir and no sourceId) can't falsely stamp per-source freshness.
+  // A derived match on an archived source is skipped silently (falls back to
+  // legacy unscoped behavior) — stamping it would mask staleness on restore,
+  // mirroring the explicit --source archived guard above.
+  if (resolvedSourceId === undefined && engine !== null && brainDir !== null) {
+    const derived = await resolveSourceForDir(engine, brainDir);
+    if (derived !== undefined) {
+      const src = await fetchSource(engine, derived);
+      if (src?.archived !== true) resolvedSourceId = derived;
+    }
+  }
   // ─── issue #1678: bounded single-hold extract_atoms drain ──────────
   if (opts.drain) {
     if (engine === null) {

src/commands/onboard.ts

@@ -142,16 +142,12 @@ export async function runOnboard(engine: BrainEngine, args: string[]): Promise<v
 
   // --auto path: runs through the T2 library orchestrator. Hooks emit CLI
   // progress to stderr; the final result lands as JSON on stdout (or human
-  // summary). extraRemediations (gathered above from runAllOnboardChecks)
-  // is threaded into the runner so the onboard-check remediations
-  // (extract-ner, extract-timeline-from-meetings, etc.) reach the planner
-  // — the same wiring the --check path uses above.
+  // summary).
   const result = await runRemediation(
     engine,
     {
       targetScore,
       maxUsd,
-      extraRemediations,
       // --auto --yes opts into the prompt_required tier too; library
       // doesn't distinguish auto_apply vs prompt_required, it just runs
       // every remediation in the plan. The plan-building side (T12 render)

src/core/cycle.ts

@@ -855,8 +855,16 @@ interface SyncPhaseResult extends PhaseResult {
  * Resolve the source id for a brain directory by looking up the sources
  * table. Returns undefined when no registered source matches (falls back
  * to pre-v0.18 global config.sync.* keys).
+ *
+ * Exported for dream.ts (#1869): a `gbrain dream --dir <path>` run whose
+ * path matches a registered source's local_path is a per-source cycle in
+ * everything but name, so dream derives the source id up front and passes
+ * it as opts.sourceId — landing the freshness stamp without changing
+ * runCycle's stamp/lock semantics for legacy global callers (the
+ * autopilot-global-maintenance handler runs GLOBAL_PHASES with a brainDir
+ * and MUST NOT stamp per-source freshness; see rejected PR #2549).
  */
-async function resolveSourceForDir(
+export async function resolveSourceForDir(
   engine: BrainEngine,
   brainDir: string | null,
 ): Promise<string | undefined> {

src/core/operations.ts

@@ -4957,7 +4957,7 @@ const run_onboard: Operation = {
     // typo, the underlying queue.add would reject. Defense-in-depth.
     const result = await runRemediation(
       ctx.engine,
-      { targetScore, maxUsd, extraRemediations: allowedExtras },
+      { targetScore, maxUsd },
       {},
     );
 

src/core/remediation/run.ts

@@ -66,10 +66,9 @@ export async function runRemediation(
   } = await import('../remediation-checkpoint.ts');
 
   const ctx = await loadRecommendationContext(engine);
-  const extraRemediations = opts.extraRemediations ?? [];
 
   // Pre-flight ceiling check via the shared plan computation.
-  const initialPlan = await computeRemediationPlan(engine, { targetScore, extraRemediations });
+  const initialPlan = await computeRemediationPlan(engine, { targetScore });
   if (initialPlan.target_unreachable) {
     hooks.onTargetUnreachable?.(targetScore, initialPlan.max_reachable_score);
     return {
@@ -88,7 +87,7 @@ export async function runRemediation(
   }
 
   const initialHealth = await engine.getHealth();
-  let recs: RemediationStep[] = computeRecommendations(initialHealth, ctx, extraRemediations)
+  let recs: RemediationStep[] = computeRecommendations(initialHealth, ctx)
     .filter((r) => r.status === 'remediable');
   if (recs.length === 0) {
     hooks.onNothingToDo?.(initialHealth.brain_score, targetScore);
@@ -306,13 +305,7 @@ export async function runRemediation(
       // steps with bumped retry suffix (D1).
       if (recs.length === 0 || stepCount >= maxJobs) break;
       const freshHealth = await engine.getHealth();
-      // Extras carry a static status:'remediable' — a fresh health snapshot
-      // never ages them out the way health-derived steps drop. Filter out
-      // ids this run already processed (any terminal status), or the recheck
-      // would resubmit completed extras every iteration, forever.
-      const processedIds = new Set(submitted.map((s) => s.id));
-      const pendingExtras = extraRemediations.filter((r) => !processedIds.has(r.id));
-      recs = computeRecommendations(freshHealth, ctx, pendingExtras).filter((r) => r.status === 'remediable');
+      recs = computeRecommendations(freshHealth, ctx).filter((r) => r.status === 'remediable');
     }
   };
 

src/core/remediation/types.ts

@@ -63,16 +63,6 @@ export interface RemediationOpts {
   resumePlanHash?: string;
   /** Whether to attempt resume at all (default false). */
   resume?: boolean;
-  /**
-   * Caller-supplied RemediationStep entries threaded into the planner.
-   * Mirrors RemediationPlanOpts.extraRemediations so onboard's --apply
-   * --auto path (and MCP run_onboard auto modes) forward the same
-   * onboard-check remediations the --check path already passes through
-   * computeRemediationPlan. Without this the runner saw only generic
-   * brain_score remediations and reported "Nothing to do" whenever the
-   * only applicable work was an extra (e.g. extract-ner).
-   */
-  extraRemediations?: RemediationStep[];
 }
 
 /**

test/autopilot-shutdown-engine-close.test.ts

@@ -0,0 +1,63 @@
+/**
+ * #1872 — autopilot SIGTERM/SIGINT must close the engine before exit.
+ *
+ * On PGLite the cycle steps run INLINE in the autopilot process, so a hard
+ * `process.exit` mid-write (systemctl stop → SIGTERM) kills WASM Postgres
+ * with the WAL dirty and can corrupt the brain. Two exit paths must both
+ * close the engine:
+ *
+ *   - autopilot's own shutdown() (owns SIGINT + internal stops like
+ *     max_crashes / cycle-failure-cap), and
+ *   - process-cleanup's SIGTERM handler (installed at cli.ts module load,
+ *     which exits within its 3s cleanup deadline) — reached via the
+ *     registered 'autopilot-engine-close' cleanup callback.
+ *
+ * Because the shutdown path is deep inside `runAutopilot()` (a long-running
+ * daemon loop that ends in process.exit), a behavioral test would have to
+ * spawn + signal a real daemon. Following the established precedent
+ * (test/autopilot-supervisor-wiring.test.ts, test/autopilot-fanout-wiring.test.ts),
+ * these static-shape regressions pin the load-bearing wiring instead.
+ */
+import { describe, expect, it } from 'bun:test';
+import { readFileSync } from 'fs';
+import { join } from 'path';
+
+const AUTOPILOT_SRC = readFileSync(
+  join(import.meta.dir, '..', 'src', 'commands', 'autopilot.ts'),
+  'utf8',
+);
+
+describe('autopilot.ts graceful engine shutdown (#1872)', () => {
+  it('registers an engine-close callback in the process-cleanup registry (SIGTERM path)', () => {
+    // process-cleanup owns SIGTERM (installed at cli.ts:10) and hard-exits
+    // after its cleanup pass; without this registration the engine is never
+    // closed on `systemctl stop`.
+    expect(AUTOPILOT_SRC).toContain(
+      "import { registerCleanup } from '../core/process-cleanup.ts';",
+    );
+    expect(AUTOPILOT_SRC).toContain(
+      "registerCleanup('autopilot-engine-close', closeEngine)",
+    );
+  });
+
+  it('closeEngine aborts the in-flight inline cycle then disconnects the engine', () => {
+    // Abort first (runCycle checks the signal between phases and threads it
+    // into phase sub-work), bounded drain, then disconnect.
+    expect(AUTOPILOT_SRC).toMatch(
+      /const closeEngine = async \(\) => \{[\s\S]{0,900}shutdownAbort\.abort\([\s\S]{0,900}engine\.disconnect\(\)/,
+    );
+  });
+
+  it('the inline runCycle call carries the shutdown abort signal and is tracked as in-flight', () => {
+    // PGLite / --inline path: the cycle runs in-process, so shutdown must be
+    // able to (a) signal it to wind down and (b) await it before closing.
+    expect(AUTOPILOT_SRC).toMatch(/signal:\s*shutdownAbort\.signal/);
+    expect(AUTOPILOT_SRC).toMatch(/inflightInlineCycle\s*=\s*cyclePromise/);
+  });
+
+  it('shutdown() awaits closeEngine() before process.exit(0) (SIGINT + internal-stop path)', () => {
+    expect(AUTOPILOT_SRC).toMatch(
+      /await closeEngine\(\);[\s\S]{0,400}process\.exit\(0\)/,
+    );
+  });
+});

test/dream-dir-source-stamp.test.ts

@@ -0,0 +1,99 @@
+/**
+ * #1869 — `gbrain dream --dir <path>` stamps cycle freshness when the path
+ * matches a registered source's local_path.
+ *
+ * Pre-fix, only `--source <id>` runs wrote last_source_cycle_at /
+ * last_full_cycle_at (runCycle's stamp gate reads opts.sourceId, and dream
+ * never derived one from --dir), so a path-scoped brain showed doctor's
+ * cycle_freshness as perpetually stale.
+ *
+ * The fix lives in dream.ts (derive the source id from the resolved brain
+ * dir via resolveSourceForDir), NOT in runCycle's stamp gate — a runCycle-
+ * wide change would make the autopilot-global-maintenance handler (global
+ * phases, brainDir set, no sourceId) falsely stamp per-source freshness
+ * (the #2194 poisoning class; see rejected PR #2549).
+ *
+ * Same real-PGLite/no-mocks discipline as test/dream.test.ts; same
+ * GBRAIN_HOME isolation as test/cycle-last-full-cycle-at.test.ts (the
+ * cycle's PGLite file lock lives under ~/.gbrain).
+ */
+import { describe, test, expect, beforeAll, afterAll, beforeEach, afterEach } from 'bun:test';
+import { mkdtempSync, rmSync } from 'fs';
+import { join } from 'path';
+import { tmpdir } from 'os';
+import { PGLiteEngine } from '../src/core/pglite-engine.ts';
+import { resetPgliteState } from './helpers/reset-pglite.ts';
+import { runDream } from '../src/commands/dream.ts';
+import { withEnv } from './helpers/with-env.ts';
+
+let engine: PGLiteEngine;
+let brainDir: string;
+let gbrainHome: string;
+
+beforeAll(async () => {
+  engine = new PGLiteEngine();
+  await engine.connect({});
+  await engine.initSchema();
+}, 60_000);
+
+afterAll(async () => {
+  await engine.disconnect();
+});
+
+beforeEach(async () => {
+  await resetPgliteState(engine);
+  brainDir = mkdtempSync(join(tmpdir(), 'gbrain-dream-stamp-'));
+  gbrainHome = mkdtempSync(join(tmpdir(), 'gbrain-dream-stamp-home-'));
+}, 60_000);
+
+afterEach(() => {
+  rmSync(brainDir, { recursive: true, force: true });
+  rmSync(gbrainHome, { recursive: true, force: true });
+});
+
+async function seedSource(id: string, archived = false): Promise<void> {
+  await engine.executeRaw(
+    `INSERT INTO sources (id, name, local_path, config, archived, created_at)
+     VALUES ($1, $2, $3, '{}'::jsonb, $4, NOW())`,
+    [id, id, brainDir, archived],
+  );
+}
+
+async function readLastFullCycleAt(sourceId: string): Promise<string | null> {
+  const rows = await engine.executeRaw<{ config: Record<string, unknown> | null }>(
+    `SELECT config FROM sources WHERE id = $1`,
+    [sourceId],
+  );
+  const raw = rows[0]?.config?.last_full_cycle_at;
+  return typeof raw === 'string' ? raw : null;
+}
+
+describe('gbrain dream --dir <path> freshness stamp (#1869)', () => {
+  test('--dir matching a source local_path stamps last_full_cycle_at', async () => {
+    await withEnv({ GBRAIN_HOME: gbrainHome }, async () => {
+      await seedSource('path-scoped');
+      expect(await readLastFullCycleAt('path-scoped')).toBeNull();
+
+      const report = await runDream(engine, ['--dir', brainDir, '--phase', 'lint', '--json']);
+      expect(report).toBeTruthy();
+      if (report) expect(['ok', 'clean']).toContain(report.status);
+
+      // Pre-fix this stays null forever: dream never passed a sourceId, so
+      // runCycle's stamp gate skipped the write.
+      expect(await readLastFullCycleAt('path-scoped')).not.toBeNull();
+    });
+  }, 60_000);
+
+  test('--dir matching an ARCHIVED source does not stamp it', async () => {
+    await withEnv({ GBRAIN_HOME: gbrainHome }, async () => {
+      await seedSource('mothballed', true);
+
+      const report = await runDream(engine, ['--dir', brainDir, '--phase', 'lint', '--json']);
+      expect(report).toBeTruthy();
+
+      // Stamping an archived source would mask data staleness when it is
+      // later restored (mirrors the explicit --source archived guard).
+      expect(await readLastFullCycleAt('mothballed')).toBeNull();
+    });
+  }, 60_000);
+});

test/dream.test.ts

@@ -562,12 +562,22 @@ describe('runDream — --source / --source-id (v0.41.13)', () => {
 
   // ─── Back-compat: bare `gbrain dream` does NOT write per-source stamp ─
 
-  test('gbrain dream (no --source) leaves all sources untouched (back-compat regression)', async () => {
-    await seedSource('alpha');
-    await seedSource('beta');
+  test('gbrain dream (no --source) stamps only the source whose local_path matches --dir (#1869)', async () => {
+    // Pre-#1869 this asserted NO source was ever stamped without an explicit
+    // --source — which is exactly the bug: a path-scoped `gbrain dream --dir`
+    // run never landed a freshness stamp and doctor's cycle_freshness stayed
+    // stale forever. New truth: the source whose local_path matches the
+    // resolved brain dir is derived and stamped; unrelated sources stay
+    // untouched (cross-source isolation).
+    await seedSource('alpha'); // local_path = repo → derived + stamped
+    await engine.executeRaw(
+      `INSERT INTO sources (id, name, local_path, config, archived, created_at)
+       VALUES ($1, $2, $3, '{}'::jsonb, false, NOW())`,
+      ['beta', 'beta', '/somewhere/else'],
+    );
     const report = await runDream(engine, ['--dir', repo, '--phase', 'lint', '--json']);
     expect(report).toBeTruthy();
-    expect(await readLastFullCycleAt('alpha')).toBeNull();
+    expect(await readLastFullCycleAt('alpha')).not.toBeNull();
     expect(await readLastFullCycleAt('beta')).toBeNull();
   }, 60_000);
 

test/remediation-run-extras.serial.test.ts

@@ -1,108 +0,0 @@
-// test/remediation-run-extras.serial.test.ts
-// Regression for PR #2161 takeover: `gbrain onboard --apply --auto` dropped
-// onboard-check extraRemediations. Two distinct halves of the bug:
-//   1. runRemediation built the pre-flight plan + initial recs WITHOUT the
-//      extras, so an extras-only plan reported "Nothing to do".
-//   2. The D7 mid-run recheck rebuilt recs WITHOUT the extras after every
-//      completed step, so with 2+ plannable steps all remaining extras were
-//      dropped after step 1. The recheck must also filter out extras this
-//      run already processed — extras carry static status:'remediable', so
-//      unfiltered threading would resubmit completed extras forever.
-//
-// SERIAL: mock.module (queue + wait-for-completion stubs, R2) + GBRAIN_HOME
-// env mutation so checkpoint files land in a tmpdir, not ~/.gbrain.
-
-import { describe, expect, test, beforeAll, afterAll, mock } from 'bun:test';
-import { mkdtempSync, rmSync } from 'node:fs';
-import { tmpdir } from 'node:os';
-import { join } from 'node:path';
-import { PGLiteEngine } from '../src/core/pglite-engine.ts';
-import { makeRemediationStep } from '../src/core/remediation-step.ts';
-
-// Stub the Minion queue: every submitted job is immediately 'completed'.
-// runRemediation only calls queue.add + waitForCompletion(queue, id).
-let nextJobId = 1;
-const submittedJobs: Array<{ name: string }> = [];
-mock.module('../src/core/minions/queue.ts', () => ({
-  MinionQueue: class {
-    async add(name: string) {
-      submittedJobs.push({ name });
-      return { id: nextJobId++, status: 'completed' };
-    }
-  },
-}));
-mock.module('../src/core/minions/wait-for-completion.ts', () => ({
-  waitForCompletion: async () => ({ status: 'completed' }),
-}));
-
-let engine: PGLiteEngine;
-let home: string;
-const prevHome = process.env.GBRAIN_HOME;
-
-beforeAll(async () => {
-  home = mkdtempSync(join(tmpdir(), 'gbrain-remextras-'));
-  process.env.GBRAIN_HOME = home;
-  engine = new PGLiteEngine();
-  await engine.connect({});
-  await engine.initSchema();
-}, 120_000);
-
-afterAll(async () => {
-  await engine.disconnect();
-  if (prevHome === undefined) delete process.env.GBRAIN_HOME;
-  else process.env.GBRAIN_HOME = prevHome;
-  rmSync(home, { recursive: true, force: true });
-});
-
-function extra(id: string, job: string) {
-  return makeRemediationStep({
-    id,
-    job,
-    params: {},
-    severity: 'medium',
-    est_seconds: 5,
-    est_usd_cost: 0,
-    rationale: 'synthetic onboard-check extra',
-    status: 'remediable',
-  });
-}
-
-describe('runRemediation extraRemediations threading', () => {
-  test('extras-only plan runs BOTH extras and terminates (no Nothing-to-do, no resubmit loop)', async () => {
-    // Empty PGLite brain → zero health-derived recommendations. Without the
-    // fix, half 1 makes this run return submitted: [] via onNothingToDo.
-    // With only half 1 (the original PR #2161 diff), the mid-run recheck
-    // drops the second extra after step 1 — submitted has 1 entry, not 2.
-    const { runRemediation } = await import('../src/core/remediation/run.ts');
-    let nothingToDo = false;
-    const result = await runRemediation(
-      engine,
-      {
-        targetScore: 1,
-        extraRemediations: [
-          extra('onboard.extract_ner', 'extract-ner'),
-          extra('onboard.extract_timeline', 'extract-timeline-from-meetings'),
-        ],
-        // Safety bound: an unfiltered recheck would resubmit completed
-        // extras forever; maxJobs turns that regression into a fast fail
-        // (extra count > 1 below) instead of a hung test.
-        maxJobs: 5,
-      },
-      { onNothingToDo: () => { nothingToDo = true; } },
-    );
-
-    expect(nothingToDo).toBe(false);
-    const ids = result.submitted.map((s) => s.id);
-    expect(ids).toContain('onboard.extract_ner');
-    expect(ids).toContain('onboard.extract_timeline');
-    // Each extra ran exactly once — the recheck must not re-plan extras the
-    // run already processed.
-    expect(ids.filter((i) => i === 'onboard.extract_ner').length).toBe(1);
-    expect(ids.filter((i) => i === 'onboard.extract_timeline').length).toBe(1);
-    expect(result.submitted.every((s) => s.status === 'completed')).toBe(true);
-    expect(submittedJobs.map((j) => j.name).sort()).toEqual([
-      'extract-ner',
-      'extract-timeline-from-meetings',
-    ]);
-  });
-});