Commit Graph
926 Commits
Author SHA1 Message Date
Garry TanandClaude Fable 5 1ec6a6e842 v0.45.9.0 feat(bootstrap): first-class cloud-sandbox install + per-turn persistence + fail-closed privacy ladder (#4045)
* feat(core): execution-environment detection — local | cloud-sandbox | ephemeral-container

detectExecutionEnvironment() + isCredentialInjectingProxy() with injected
signals (CLAUDE_CODE_REMOTE, cse_ session-id prefix, proxy-injected token
placeholder, anthropic-egress proxy JWT, container markers). binaryOnPath
moves here as the canonical PATH probe. autopilot's detectInstallTarget
ephemeral branch now routes through the shared detector.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat(bootstrap): repo-visibility ladder + per-turn Stop push + same-session failure banner

The durability lane. One repo-visibility verdict for every consumer (REST
first — never GraphQL, which sandbox proxies pin; authed ls-remote + an
attributed anonymous probe as the git-protocol fallback), replacing three
drifted probes. A 200 counts as public only with advertisement proof; a
401/404 counts as private-signal only with an auth challenge — fail-closed
in BOTH directions. Private verdicts cache 1h (private-only, per origin).

gbrain hook stop now spawns a debounced detached push per turn (per-root
state; cloud-sandbox defaults to every turn, elsewhere 5 min; a failing
status bypasses the debounce), closing the /exit and VM-reclaim gaps.
Push status is per workspace root, read through one shared reader by the
user-prompt banner (additionalContext + systemMessage — visible to the
human, not just the model), the SessionStart note, and doctor. Escape
hatches for self-hosted git: flag > env > file-plane config key.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat(bootstrap): environment-aware install — honest cron skip, cloud repo-create guard, execution_env surfaces

installDurabilityCron probes for crontab before writing anything (containers
and cloud sandboxes ship without one — expected, reported as an honest skip
naming the event-driven pushes that still cover persistence). The repo phase
installs the container-friendly harden half (post-commit hook, no scheduler)
outside local machines. createPrivateRepo fails fast in cloud sandboxes with
the flow that works (create outside, open the session ON the repo, attach).
bootstrap verify gains a never-gating execution_env check; bootstrap status
--json carries execution_environment for installing agents to branch on.

Also fixes a live-PATH resolution class: binaryOnPath and the crontab execs
now pass the current env explicitly (Bun resolves against the startup
snapshot otherwise).

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(bootstrap): lifecycle hygiene — uninstall teardown, doctor job liveness, .mcp.json out of the repo, honest persistence copy

uninstall now tears down the durability wiring it installed (launchd/cron
job, untracked post-commit hook, credential wiring — the committed helper
and AGENTS rules stay). doctor gains bootstrap_durability_job: presence +
LIVENESS (launchctl load-state, crontab line, pull-log freshness) — a plist
on disk with a dead job no longer reads as healthy. Rendered .gitignore now
covers .mcp.json (absolute machine paths must not land in the private
repo); verify warns on pre-fix installs that committed it; the never-built
state/mcp.json promise is gone from GITHUB.md. Persistence copy tells the
truth everywhere: event-driven pushes do the durability work, the 30-min
job is a multi-machine pull freshener. Post-commit hook install/removal is
worktree-safe (git-path resolution; the git marker is a FILE there) and the
cron wrapper's self-disable tests the repo dir, not its git marker. Two
follow-up TODOs filed (plugin hook distribution; Channels push lane).

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat(bootstrap): committed hook carrier for cloud + cloud-setup-script emitter + cloud runbook

Cloud sessions clone fresh and snapshot hook config at session start — the
gitignored settings.local.json never exists there, so hooks never fired in
cloud at all. Cloud installs now write the repo-COMMITTED .claude/settings.json
with PATH-resolved, fail-open commands (no machine paths; a host without the
binary no-ops); local installs keep settings.local.json; the writers enforce
that one event never fires from both carriers, and removal cleans both.

New: gbrain bootstrap cloud-setup-script prints the paste-ready environment
setup script (npm transport — bun fetching is proxy-incompatible in cloud;
never the unrelated npm-registry package). Runbook gains a NEVER FABRICATE
TOOLING hard rule, a cloud-sandbox section (expected degradations as facts to
relay, the attach-first flow), and failure-table rows for the proxy-403 and
missing-crontab signatures. Codex lane stated honestly: AGENTS.md Gate 2 now
has the pull-side push-health check. Guide documents the new knobs and the
cloud contract; llms bundles regenerated.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* test(bootstrap): per-turn push e2e chain, cloud-sandbox sim, per-root status reader migration + registry regen

bootstrap-persistence e2e gains the Stop-hook chain (one stop banks the turn
to the real bare remote; the debounce holds across stops; debounce-0 lands
consecutive turns) and fixes a pre-existing post-#4024 break: repoPhaseComplete
required a github-parseable origin, so session-end pushes deferred FOREVER for
self-hosted/file-transport origins — non-github repo_urls now bind by exact
URL equality (redirect protection preserved). Degraded-modes e2e gains the
cloud-sandbox simulation (status reports the environment; repo creation
refuses with the attach flow). workspace-push tests read per-root status
through the shared reader. Flag registry regenerated (new git argv literals
from the git-path/ls-files calls — the accepted argv-bleed class).

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(doctor): categorize bootstrap_durability_job (categories drift guard)

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(bootstrap): adversarial-review hardening — fail-closed privacy, no push-storm, no exfil paths

Both Claude and Codex adversarial passes ran; 11 findings fixed (union):
- Non-github 401+WWW-Authenticate no longer reads as private (RFC 7235 makes
  the header mandatory on every 401, so a middlebox 401s identically) — the
  top exfil path both models flagged; now unverifiable/fail-closed, operator
  confirms via the escape hatch. github.com still needs x-github-request-id.
- Escape hatches downgrade ONLY 'unverifiable' — a PROVEN-public origin still
  refuses (hatches never authorize a public push).
- treeNeedsPush measures against origin/<branch> (the push's own ref), not
  @{u}: a no-upstream branch no longer reports a committed-but-unpushed tree
  as push_clean and silently strands it.
- [D20] failing-retry uses a fixed 60s floor, not min(debounce,60s) — cloud
  debounce=0 no longer re-runs the network ladder every turn.
- Committed hook carrier: dedupe/suppress only on the EXACT portable-command
  shape, not a 'gbrain hook' substring (blocks the suppress-local-run-evil
  supply-chain vector); GBRAIN_HOME refused in the committed carrier.
- push-status reason sanitized (charset+length) at every surface (banner,
  doctor, status blob) so remote git stderr can't inject via the remediation.
- Per-root state: ghost-root records (deleted workspaces) filtered so a dead
  failing record can't re-fire the banner forever; uninstall removes them.
- statusReport support blob reads push status through the shared per-root
  reader; visibility cache strips URL userinfo (no PAT persisted).
- anonProbe strips userinfo + redirect:manual + SSRF flags + --end-of-options
  on ls-remote; cron self-disable uses git rev-parse (worktree-safe both
  ways); cloud-setup-script fails loud on a broken update; durability liveness
  won't certify a never-run crontab as live; config get/unset resolve the
  dotted file-plane keys; .bak/.broken gitignored; typed config fields.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* v0.45.8.0 feat(bootstrap): first-class cloud-sandbox install + per-turn persistence + fail-closed privacy ladder

VERSION + package.json + CHANGELOG + TODOS + llms bundles.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* docs: sync KEY_FILES + README for the cloud-DX wave (v0.45.8.0)

New KEY_FILES entries for execution-env.ts and repo-visibility.ts; updated the
bootstrap repo/hooks, workspace-push, brain-repo-durability, and hook.ts
entries to current behavior (ladder verification, committed cloud hook carrier,
per-root push status, crontab probe + liveness, per-turn stop push + banner).
README's Claude Code line now states per-turn + cloud persistence honestly.
llms bundles regenerated.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(bootstrap): doc-review pass — attach records repo_url (enables cloud persistence), verify reads per-root push status, honest docs

Cross-model doc review (Codex) caught that the headline cloud-persistence
claim was hollow and two docs over-claimed:
- attach now records repo_url from the adopted origin, so the no-daemon push
  gate (repoPhaseComplete) recognizes the repo phase as done — WITHOUT this,
  the per-turn/session-end pushes deferred forever after an attach, which is
  the ONLY install path in a cloud sandbox (repo is refused there). Privacy is
  still enforced at push time by the ladder.
- bootstrap verify's push_probe reads the shared per-root reader [D8], not the
  legacy single file — a fresh v0.45.8 install no longer reports 'no push
  recorded' when per-root status exists.
- Docs corrected to match code: runbook stamp → 0.45.8.0; README states the
  per-turn cadence honestly (debounced local, next-turn failure notice);
  GITHUB.md qualifies auto-push as Claude Code (Codex is pull); KEY_FILES says
  repo/status use REST (not the full ladder) and drops the stale --push;
  bootstrap.md hooks-location covers both carriers; README verbs surface says
  seven. llms bundles regenerated.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(bootstrap): regenerate vendored template-repo tree + isolate env-mutating tests (verify gate)

The verify CI gate caught two things the piecemeal local runs missed:
- templates/bootstrap/template-repo/ is a GENERATED tree; the source-template
  edits (AGENTS.md Gate 2, CLAUDE.md cloud note) plus the version stamp had
  drifted. Regenerated from source (check:bootstrap-templates green).
- test/bootstrap-repo.test.ts + test/durability-cron.test.ts newly mutated
  process.env in non-serial files; converted to withEnv() (check:test-isolation
  green) — no .serial rename needed.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* test(ambient-recall): pin a keyless gateway so delta/context_pack writes never fire a real embed

Root cause of the shard-2 CI red after the 0.45.9.0 re-bump: adding this
wave's test files reshuffled the weight-packed shards, moving
ambient-recall.test.ts next to a neighbor that leaks CI's dummy
OPENAI_API_KEY (sk-test-*) into the gateway singleton (the bunfig preload
configures with env:{...process.env}, and a present-but-invalid key turns
remember's keyless-degrade embed into a hard 401). The delta/context_pack
tests exercise cursor + budget logic, not embedding quality, so this pins a
keyless gateway (env:{}) in beforeAll — isAvailable('embedding') is false,
writeSingleFact degrades (degraded_dedup) with no HTTP call, and the file is
deterministic regardless of shard bin-packing. Verified: passes with
OPENAI_API_KEY=sk-test-* set (the CI condition). Master's own comment in
legacy-embedding-preload.ts already warns 'adding any test file reshuffles
the mines'; this makes the file immune.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

---------

Co-authored-by: Claude Fable 5 <noreply@anthropic.com>
v0.45.9.0
2026-08-12 16:12:59 -07:00
068f586128 docs(release): document the bootstrap runbook + template-tree version stamps in the version-locations table (#4051)
Both are CI-enforced on every VERSION bump (check-bootstrap-tag.sh,
check-bootstrap-templates.sh) but were missing from the table that
release flows read first.

Co-authored-by: test <test@test.co>
Co-authored-by: Claude Fable 5 <noreply@anthropic.com>
2026-08-12 14:58:27 -07:00
testandClaude Fable 5 4dc77c3979 v0.45.8.0 fix: community fix-wave — 25 PRs from 24 contributors (MCP correctness, sync/import data safety, doctor accuracy)
Every fix reviewed, tested in isolation, adversarially verified, security
reviewed, and re-tested as one composed branch. Full attribution preserved
via per-commit Co-Authored-By trailers.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
v0.45.8.0
2026-08-12 14:38:36 -07:00
test 3e4bc112d8 test: pin file_list BigInt normalization against the ctx-engine seam (#3869 rider)
file_list now routes through sqlQueryForEngine(ctx.engine); the pin keeps
the identical BigInt-normalization invariant but mocks the new seam
instead of the retired module-global db connection.
2026-08-12 14:38:36 -07:00
test a4422f96ef test: genericize fixture slugs per the repo privacy rule (#3869 rider)
check:test-names guard flags private agent-fork names in test fixtures;
concepts/example-board carries the same path shape.
2026-08-12 14:38:36 -07:00
test 447f81956d test(e2e): complete the embedding.ts mock export surface for the cycle-sync import path
The wave's sync changes make the cycle sync phase lazily import
commands/sync.ts, whose static embedding.ts imports must all resolve
against the test's module mock (a missing name is a load-time
SyntaxError). Stubs mirror the real pure functions.
2026-08-12 14:38:36 -07:00
Garry Tan dcad42534e chore(wave): regenerate CLI flag registry for wave flag additions
Freshness guard (#2185) requires the committed registry to match a fresh
generator run after the wave's flag changes.
2026-08-12 14:38:36 -07:00
Garry TanandSergey Sholom ce156eb8ed fix(sync): unquote git C-style-quoted paths in buildSyncManifest (#3897) (#3899)
Wave-assembled from PR #3899 by @SergeyShol.

Co-Authored-By: Sergey Sholom <sergey.sholom@gmail.com>
2026-08-12 14:38:36 -07:00
Garry Tanandjavieraldape 3f595083fe fix(mcp): honor dotfile source for stdio serve (#3906) (#3965)
Wave-assembled from PR #3965 by @javieraldape.

Co-Authored-By: javieraldape <6430563+javieraldape@users.noreply.github.com>
2026-08-12 14:38:36 -07:00
Garry TanandHunter Veltri d8e3772810 fix(autopilot): resolve gbrain CLI on Windows via %PATH% enumeration (#3832)
Wave-assembled from PR #3832 by @veltri-23.

Co-Authored-By: Hunter Veltri <veltrifinancial@gmail.com>
2026-08-12 14:38:36 -07:00
Garry TanandBen Sheridan Edwards 810d1c5540 fix(serve): route all stdout logging to stderr under stdio MCP (#3844)
Wave-assembled from PR #3844 by @BenSheridanEdwards.

Co-Authored-By: Ben Sheridan Edwards <bensheridanedwards@gmail.com>
2026-08-12 14:38:36 -07:00
Garry TanandBo 2dc33fb865 fix(import): call clearFailures() for paths that succeed this run (#3843)
Wave-assembled from PR #3843 by @bo-developing.

Co-Authored-By: Bo <bo.developing@gmail.com>
2026-08-12 14:38:36 -07:00
Garry TanandKyle Cooper dc6e61b07f fix(pglite): batch code edge inserts below bind limit (#4010)
Wave-assembled from PR #4010 by @kyle944.

Co-Authored-By: Kyle Cooper <kyle@erudireworkforce.com>
2026-08-12 14:38:36 -07:00
Garry TanandPhilip Eriksson 30c81b709c fix(eval): resolve BrainBench defaults from package root (#3996)
Wave-assembled from PR #3996 by @philip-rossoneri.

Co-Authored-By: Philip Eriksson <philip@rossoneri.se>
2026-08-12 14:38:36 -07:00
Garry TanandNidhin Tamil 0a1890bbf8 fix(sync): never write a baseline commit over an already-populated repo (#3964)
Wave-assembled from PR #3964 by @NidTamil.

Co-Authored-By: Nidhin Tamil <nidhin@ymail.com>
2026-08-12 14:38:36 -07:00
Garry Tanandmasashiono0611 a849d833eb fix(frontmatter): drop the shipped rule binding a personal folder to a sensitive category (#3949)
Wave-assembled from PR #3949 by @Masashi-Ono0611.

Co-Authored-By: masashiono0611 <masashi.ono.0611@gmail.com>
2026-08-12 14:38:36 -07:00
Garry TanandSofía González 23c7b0eb16 fix(import): reject malformed YAML frontmatter (#3708) (#3923)
Wave-assembled from PR #3923 by @javieraldape.

Co-Authored-By: Sofía González <sofiagonzalez@Sofias-MacBook-Air.local>
2026-08-12 14:38:36 -07:00
Garry Tanandmasashiono0611 94ec7e31e0 fix(minions): verify the finally-resolved model at the subagent gate — the models.subagent config path bypassed capability checks (#3919)
Wave-assembled from PR #3919 by @Masashi-Ono0611.

Co-Authored-By: masashiono0611 <masashi.ono.0611@gmail.com>
2026-08-12 14:38:36 -07:00
Garry Tanandmasashiono0611 3fa0a5acb5 fix(dream): do not permanently cache truncated or degenerate significance verdicts (#3918)
Wave-assembled from PR #3918 by @Masashi-Ono0611.

Co-Authored-By: masashiono0611 <masashi.ono.0611@gmail.com>
2026-08-12 14:38:36 -07:00
Garry TanandMike Williamson 8ecd52022e fix(ai): match hyphenated Qwen3-Embedding ids for dimensions passthrough (#3909)
Wave-assembled from PR #3909 by @mikez93.

Co-Authored-By: Mike Williamson <mike@imekka.com>
2026-08-12 14:38:36 -07:00
Garry Tanandmasashiono0611 e795324ec5 fix(doctor): surface abandoned PGLite stores after an engine migration (#3856) (#3879)
Wave-assembled from PR #3879 by @Masashi-Ono0611.

Co-Authored-By: masashiono0611 <masashi.ono.0611@gmail.com>
2026-08-12 14:38:36 -07:00
Garry TanandDavid Paluy f7d63c7159 fix: MCP file ops use the connected OperationContext engine, not the global DB singleton (#3869)
Wave-assembled from PR #3869 by @dpaluy.

Co-Authored-By: David Paluy <dpaluy@users.noreply.github.com>
2026-08-12 14:38:36 -07:00
Garry TanandSean Gearin 0a34ced5d7 fix(mcp): treat null / empty-string optional params as absent at dispatch (#3850)
Wave-assembled from PR #3850 by @SeanGearin.

Co-Authored-By: Sean Gearin <sean@indistinct.ai>
2026-08-12 14:38:36 -07:00
Garry TanandSofía González 2dbaebbe16 fix(progress): preserve Ctrl-C termination for shared reporter (#3614) (#3825)
Wave-assembled from PR #3825 by @javieraldape.

Co-Authored-By: Sofía González <sofiagonzalez@Sofias-MacBook-Air.local>
2026-08-12 14:38:36 -07:00
Garry TanandBrett b0b9af042f fix(models): replace the /v1 doctor hint with a /models-probe base-URL classifier (#3787)
Wave-assembled from PR #3787 by @brettdavies.

Co-Authored-By: Brett <brettdavies@users.noreply.github.com>
2026-08-12 14:38:36 -07:00
Garry TanandConstantin Gozman 8db07e4a79 fix(takes): resolve the page before writing markdown in takes add (#3781)
Wave-assembled from PR #3781 by @ghizi.

Co-Authored-By: Constantin Gozman <constantingozman@gmail.com>
2026-08-12 14:38:36 -07:00
Garry TanandYMYD f7d4f19124 fix(schema): apply the configured FTS language to the schema template — initSchema replay reverts non-English brains to 'english' (#3774)
Wave-assembled from PR #3774 by @paul-0320.

Co-Authored-By: YMYD <paul@ymyd.co.kr>
2026-08-12 14:38:36 -07:00
Garry Tanandarisgysel-design b966d2682c test(openclaw): inspect runtime in plugin loader E2E (#3742)
Wave-assembled from PR #3742 by @arisgysel-design.

Co-Authored-By: arisgysel-design <arisgysel-design@users.noreply.github.com>
2026-08-12 14:38:36 -07:00
Garry Tanandsmdesai27 636628fdb2 fix(sync,import): global sync.* anchors only move for the brain repo they describe (#2114) (#3735)
Wave-assembled from PR #3735 by @smdesai27.

Co-Authored-By: smdesai27 <sanilmdesai@gmail.com>
2026-08-12 14:38:36 -07:00
Garry TanandPaolo Belcastro cb07cfda8d fix(budgeting): add Sonnet 5, Fable 5, and Opus 4.8 to the synthesize context map and brainstorm output caps (#3727)
Wave-assembled from PR #3727 by @p3ob7o.

Co-Authored-By: Paolo Belcastro <p3ob7o@users.noreply.github.com>
2026-08-12 14:38:36 -07:00
Garry TanandGreg Jackson 9b6db85d39 fix(skills): advertise usable tools on stdio transport (#3725)
Wave-assembled from PR #3725 by @gregario.

Co-Authored-By: Greg Jackson <gregj64@gmail.com>
2026-08-12 14:38:36 -07:00
Garry TanandGreg Jackson 8d5bdfe125 fix(mcp): reject sources_add path on remote transport (#3724)
Wave-assembled from PR #3724 by @gregario.

Co-Authored-By: Greg Jackson <gregj64@gmail.com>
2026-08-12 14:38:36 -07:00
Garry TanandClaude Fable 5 15ecc65b24 v0.45.7.0 feat(mcp,context): ambient recall — context_pack + delta frozen verbs + boundary runtime (#1) (#4028)
* feat(mcp,context): ambient recall — context_pack + delta frozen verbs + boundary runtime (#1)

Two new frozen MEMORY_VERBS (context_pack, delta) on the pull surface + a
Claude Code hook boundary runtime on the push surface, sharing one stateless
assembler core (assembleTurnContext mode: turn|pack|delta) and a keyset
session cursor (migration v126). World-only by default; include_private
gated fail-closed to trusted-local. protocol_version stays 1 (additive
5→7 verbs). Survived three adversarial review waves.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* v0.45.7.0 feat(mcp,context): ambient recall — context_pack + delta frozen verbs + boundary runtime (#1)

Two new frozen MEMORY_VERBS (context_pack, delta) grow the frozen set 5→7
without a wire bump — all seven stamp protocol_version: 1. context_pack
assembles a deterministic, zero-LLM, budget-packed bundle (entity cards +
open threads + hot facts) for a set of standing entities; delta returns
only what changed since a timestamp for cheap heartbeats, with a
per-session keyset cursor for at-least-once delivery. A boundary runtime
wires these into Claude Code lifecycle hooks (SessionStart warm pack,
PreCompact entity banking for post-compaction rehydration); Codex and any
MCP host pull the same verbs at their own boundaries. World-only by
default on all arms; include_private widens only for local trusted
callers. Migration v126 adds session_context_state (additive).

Includes the coverage close-out wave (~55 tests): real-serve compact→
session-start round trip over the live socket, --surface verbs stdio
session pinning exactly 7 tools fail-closed, HTTP-transport verb calls
with per-token cursor isolation, Postgres engine-parity for keyset
pagination + the session-cursor table, migration v126 shape + rewind
test, sub-second latency gates, CLI-level invocations, rendered-protocol
boundary assertions, and a live-Codex boundary-call check. The wave
caught and fixed three real bugs: the delta CLI wedging on first wake
(floating GC promise racing engine teardown), the compact hook probing
the PGLite socket on a Postgres config with a leftover database_path,
and the verbs-surface banner hardcoding a stale verb count.

Also the /document-release sweep: stale "five verbs" → seven across the
protocol doc, README, INSTALL, DEPLOY, the Claude Code MCP guide, and
the query skill; deferred scope filed in TODOS.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(release): bump openclaw.plugin.json to 0.45.7.0 — the sixth version location

The #4033 merge auto-resolved the OpenClaw plugin manifest at master's
version while the trio moved to 0.45.7.0, failing the manifest drift test
on CI shard 4. Register the file in CLAUDE.md's version-locations table
(five → six) so every future ship and merge re-bumps it with the trio.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

---------

Co-authored-by: Claude Fable 5 <noreply@anthropic.com>
v0.45.7.0
2026-08-12 10:56:11 -07:00
Garry TanandClaude Fable 5 3f22f51e5d v0.45.6.0 feat(skills): giftable-skills import wave — 17 new production skills + 8 upgrades (#4033)
* feat(skills): check-skill-refs gate + per-commit skills gate runner

Three integrity checks over skills/ markdown: dangling refs (backtick
paths, composes: frontmatter, RESOLVER dispatcher slugs), donor-remnant
paths behind a ratchet allowlist, and warn-only CLI-reference drift
against the live tool surface. Wired as check:skill-refs in verify and
bundled into scripts/skills-commit-gate.sh (conformance+resolver tests,
check-resolvable --strict, lock regen+freshness, refs, optional per-file
privacy lint) for any commit touching the skills pack.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat(skillpack): machine-readable plugin curation record + membership assertions

skills/plugin-exclusions.json records why each manifest skill is not
bundled into openclaw.plugin.json (Tier B host-only decisions, seeded
from the pre-existing split). test/openclaw-plugin-manifest.test.ts now
asserts manifest = bundled + exclusions with no overlap, no orphans, no
stale exclusions, and a sorted skills array (two pre-existing sort
inversions fixed). Bundling decisions are now review-visible: moving a
skill between tiers requires touching both files in one commit.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat(skills): skillify reconciled with the evolved upstream line (v2.0.0)

Adopts eval contracts, the NO-REGRESSION LAW, idempotency guidance, and
the 14-item checklist from the upstream skillify line while preserving
this repo's divergent content. bulk-ingestion (later in this wave)
delegates its codify phase to this checklist.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat(skills): book-mirror 0.5.0 backport

Table-misalignment root-cause fix, anti-repetition hard constraints, and
the resonant-stance rewrite from the upstream line, generalized onto
native gbrain surfaces (no external storage libs).

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat(conventions): test-before-bulk gains the progressive ramp + output-existence checks

10 -> 100 -> 500 -> full ramp with per-round stop gates, the
count-before/count-after output-existence check (catches silent zero-row
writes), the <2% error-rate gate, the copy-paste verification checklist,
cost estimation, and pointers to native pace mode + progress flags so
nobody rebuilds throttling in bash.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat(conventions): regex-discipline — judgment vs heuristic epistemics

The one-question test (deterministic-and-rote vs judgment), the earned-
regex sequence, red flags/green lights, never-regex-what-an-attacker-can-
imitate, and two genericized cautionary tales. Pairs with
test-before-bulk: look before you compress, compress only the rote.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat(conventions): path-discipline — display strings are not path strings

Never pass a display-formatted link/URL to a file tool; a "successful"
write to a poisoned path lies. Poisoned-path tells, verify-before-done,
retry discipline, junk-tree recovery.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat(conventions): exec-output — buffer to file, read bounded slices

Empty exec results usually mean truncation, not a broken shell. The
buffer-then-slice rule, shell patterns, and the diagnostic ladder,
generalized to any harness. Conventions half of the durable-execution
doctrine (the minion-orchestrator half lands separately).

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat(skills): concept-synthesis 0.2.0 — curation cull phase

Adds the keep/delete/merge muscle the synthesis loop lacked: minimum
substance gates (style cannot rescue hollow ideas), weighted verdict
bands with hard delete triggers, grounding labels wired to the citation
conventions, a reputational-risk gate, cluster budgets, and reversible
merge-with-backlinks with merge-count as an emergent-salience signal.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat(skills): measure-before-you-fix — measure-first ops triage

Stopwatch-verify before raising timeouts; act-line vs alert-line. Trigger
vocabulary maps onto the shipped doctor/autopilot/sync alert classes.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat(skills): data-loss-gate — confirmation gate for irreversible operations

Recoverability checklist + alternatives + explicit-yes before any bulk
delete, forget sweep, source/mount removal, or history rewrite. No
category-level exception classes: disposability is a property of the
inspected target. Routing-convention honesty: the native operation-
boundary confirm remains a filed follow-up.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat(skills): fact-check — pre-publication claim verification

Breadth gate: extract every verifiable claim, verify each against live
sources with a confidence scale. Data-derived claims section carries the
two laws: producer is never verifier (independent re-derivation via a
different query path) and affiliation is not authorship (typed edges,
not co-occurrence). Hard-block on unsupported claims.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat(skills): resolve-before-asking — exhaust the brain before interrupting the human

Query, timeline, and every mounted source before asking; when asking is
justified, ask WITH a hypothesis (pairs with ask-user). Includes the
no-placeholders-at-ingest rule. Owns WHETHER asking is justified; query
owns the lookup verb, brain-ops the read-write cycle.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat(skills): brain-ingest-gate — ingest entry gate (no raw copies, entity resolution, dedup)

No-raw-copies entry rule; the Named-Entity Resolution Gate (registry-
first + alias expansion — a vector score is a floor for prose, never a
gate for named things); the qualitative dedup decision tree (open and
read the top hit before writing). The gate keeps full dedup
responsibility: native import skips only matching frontmatter IDs.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat(skills): correction-pipeline — trace corrections to the contamination source

When the user corrects a fact: root-cause it (7-class taxonomy), fix the
source surface (facts table via recall/forget/remember; pages via edit +
re-sync; identity files via bootstrap templates), then run the
propagation check. Never just note it.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat(skills): company-brainify — personal-to-team brain sanitization

Strip/keep tables, triage grep pipelines, verification greps, and the
history-purge procedure for publishing a sanitized team brain from a
personal one. Scan scope covers meetings, dailies, facts, and takes, not
just people pages. History rewrite is gated through data-loss-gate with
a mirror-clone backup.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat(skills): citation-graph-ingest — typed inter-document citation edges

Extract every inter-document reference from an ingested corpus and
classify the edge type (overrules/distinguishes/relies-on/extends...),
written via native link ops and queryable via graph-query. States
plainly that natural-language relational retrieval walks a fixed edge-
type set today; wiring these types in is a filed follow-up.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat(skills): two-tier-extraction — triage/deep-read model routing for archives

Cheap-model triage pass, gate, then strong-model deep read for archive
ingestion, expressed through the model-routing conventions. Deterministic
privacy wall: named-entity and sensitive-pattern classes are stripped
before any model call; ambiguous content fails closed to human review.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat(skills): brain-link-discipline — verified links in every deliverable

Composite: same-message link rule, path derivation via git ls-files,
push-before-link ordering, subagent-relay path rewrite, bulk-list
formatting. Fallback chain: verified hosted-remote URL, then repo-
relative path with a scope note, then publish output offered as an
attachable artifact (never promised as a URL). Extends _output-rules.md
with the verified-deliverable-link canon and the in-page (relative) vs
in-message (absolute) scope split.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat(skills): draft-in-voice — memory-grounded ghostwriting from validated profiles

Load a validated voice profile, obey its hard rules, produce 2-3 drafts,
run the voice-fidelity self-check, never auto-post. Ships the build-a-
profile appendix (corpus threshold, fingerprint schema, profile page
schema with provenance/consent/versioning) so users without a donor
profile aren't dead-ended.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat(skills): bulk-ingestion — the disciplined bulk pipeline lifecycle + manifest substrate

Composite: the schema-trial-evaluate-codify-bulk-monitor lifecycle spine
plus the manifest.json durable-state substrate (stable source-derived
ids, derived-not-asserted status, idempotent workers, per-worker
progress-file merge, never trust a subagent's 'done' — verify on disk).
Codify delegates to skillify; execution to jobs/minions; ramping to
test-before-bulk.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(scripts): check-skill-refs reads cliHints from operations source

--tools-json does not serialize every op's cliHints, so real commands
(get, timeline, backlinks, graph, link) warned as unknown. The checker
now also derives the known-command set from operations.ts cliHints
names + aliases.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat(skills): meeting-ingestion 2.0.0 — recorder-agnostic pipeline backport

Normalized transcript record as the any-recorder contract, multi-meeting
split detection, cross-recorder dedup, evidence-based speaker resolution
(never guess; ASR-variant search-before-create), required page sections
with explicit-reason-for-empty, claim-verification table, and the brain-
contradiction consistency check.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat(skills): meeting-ingestion 2.1.0 — verify-before-done phase

Hard gate before reporting ingested: required sections have substance,
every people/companies slug has a page + timeline backlink, speaker map
resolved, every quote grounded verbatim in the transcript (deterministic
sidecar checks where transcripts are retained), fabricated-attendee
sanity checks.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat(skills): meeting-ingestion 2.2.0 — sequence verify (chronology checks)

Deterministic order lint before a meeting page ships: phase-inversion
and impossible-transit checks, day-timeline gaps corroborated against
`gbrain day`, with a pass/block/explicit-waive contract (waives logged
as acknowledged, not resolved). Adds routing-eval fixtures for the
upgraded skill.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat(skills): reports 1.1.0 — Actionability Gate

Four link failure modes (Broken/Dead/Indirect/Missing) with the rule "a
missing link is honest, an indirect link is a broken promise", the
blocked-vs-warning table, retry loop as agent-run checks, and the prompt
gate snippet. Canon lives in _output-rules.md; this section carries the
taxonomy delta. Routing fixtures added.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat(skills): briefing 1.3.0 — pre-briefing context pulls

Salience, anomalies, personal recall, and hot-memory pulse pulls before
composing the briefing, wired to the real CLI flags (anomalies uses
--lookback-days, not the upstream --since form). Routing fixtures added.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat(skills): daily-task-manager 2.0.0 — stable IDs + fail-closed actions

Stable task-ID anchors, deterministic action routing, fail-closed
ambiguity handling (no mutation on zero/multiple matches), structured
Returns contract with an agent-chaining JSON mode, minimal-diff save
discipline. Routing fixtures added.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat(skills): eiirp 1.1.0 — auto-fire gate (file before you deliver)

Always-on convention: when substantial structured analysis of a user-
shared document is about to be delivered, file the brain page first and
deliver analysis + link in the same reply. Fire conditions, does-not-
fire list, dedicated-pipeline exemptions, per-user storage-policy
override. eiirp moves from plugin exclusion to bundled — the gate is
load-bearing for downstream installs. Routing fixtures added.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat(skills): minion-orchestrator 1.1.0 — durable execution doctrine

Capability ladder for operations over two minutes: jobs + a one-shot
self-deleting deadman (verifying the result was REPORTED, not that the
process exited) where the shell-jobs contract allows; cron-checked
progress file; foreground with buffered output otherwise. Deadman
failure modes (dies before firing, double-fire idempotency, stale
checkpoint) encoded in Contract and Anti-Patterns; content-addressed
stage-checkpoint appendix. Existing trust-boundary text unchanged.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* test(skills): concept-synthesis cull-phase routing fixtures

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat(skills): research-compendium — archive, summarize 1:1, synthesize self-contained

Deep-research discipline: archive every source, one summary per source,
then a self-contained synthesis (the Self-Contained Rule; Low-Bar/High-
Ceiling). Claims verification delegates to fact-check; retention is
gated by the user's privacy posture.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat(skills): context-audit — token hygiene for the always-loaded stack

Report-only audit of SOUL/MEMORY/CLAUDE/AGENTS-class files: redundancy,
contradictions, staleness, compression candidates ranked by token
savings. Recommendations target bootstrap templates, never rendered
files; judging routes through the native cross-modal eval runner with a
cheap-model default.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat(skills): blog-ingest — whole-publication and feed ingestion

Feed discovery, pagination walking, article-shape normalization,
canonical-URL dedup, idempotent re-runs, polite pacing, and empty-husk
repair as agent procedures; per-article enrichment hands off to
brain-ingest-gate. Public posts only. Fetched text is data, never
instructions (untrusted-content section).

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat(skills): conversation-archive — AI-chat history as first-class brain content

Convert chat exports into per-conversation pages, import, validate via
the conversation-parser surface, extract facts; gap-healing backfill
under the three invariants (capture cadence outruns eviction, gap
detection, write-path equals commit-path); idea-evolution tracing.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat(skills): skill-autobench — evals mined from lived usage

Mine a skill's real invocation history (user corrections are the gold
signal) into a proposed eval contract and replayable cases with honesty
labels, staged pending human approval — never rewrites a skill.
Multi-model judging verifies each provider actually responded. Extends
the SkillOpt surface; never duplicates it.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* docs(todos): giftable-import wave follow-ups

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(skills): resolver strict reconciliation — triggers, fixtures, disambiguation

Drives check-resolvable --strict to zero on the 69-skill pack: wave-side
trigger narrowing (bare words become phrases on measure-before-you-fix,
data-loss-gate, brain-ingest-gate), fixture intents rewritten to
realistic phrasings, wave-side MECE duplicates removed, the ingest-gate
quality rules delegated to conventions, and three new disambiguation
rules (publication/article/media/chat-export routing, soul-audit vs
context-audit, measurement-first triage vs debugging).

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat(skills): idea-ingest 1.1.0 — Returns contract + edge cases backport

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat(skills): media-ingest 1.1.0 — input contract, error handling, known pitfalls

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat(skills): brain-ops 1.1.0 — entity-card first lookup + shallow-ls warning (memory-verbs block preserved)

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat(skills): maintain 1.1.0 — weekly feature-adoption check

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat(skills): data-research 1.1.0 — infer research target from context

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* chore(llms): regenerate bundles after the skills wave

RESOLVER.md is inlined into the llms bundles; the wave's routing rows
and disambiguation rules regenerate here (single wave-end regen; the
committed bundles match HEAD per test/build-llms.test.ts).

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(test): assemble banned-path fixtures at runtime in check-skill-refs tests

The privacy check bans those literals in source files; the fixtures now
construct them so the test still exercises the donor-remnant gate.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(skillpack): bundle capture + publish; keep host-only contrast fixtures portable

The downstream-install smoke showed shipped fixtures referencing host-
only skills. capture and publish move from exclusions to the bundle —
both are user-facing and wave skills route to them (the eiirp auto-fire
files via capture; brain-link-discipline falls back to publish).
Contrast fixtures that pointed at host-only skills (smoke-test,
skill-optimizer) now target shipped skills with declared ambiguity, so
`check-resolvable --strict` is green on the host pack (69 skills) AND on
a fresh scaffolded install (58 skills).

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* test(evals): post-import-wave routing receipt (haiku)

A/B harness run against the 69-skill resolver after the import wave:
baseline (uncompressed) 100% held-out / 78.3% training strict — beating
both compression variants on strict scoring, corroborating the review
decision to defer resolver compression to its own PR.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(skills): pre-landing review fixes — trust boundaries, gate hardening, registration prose

From the six-reviewer pre-landing pass: research-compendium gains the
untrusted-content section (verbatim web archives feed future recall);
blog-ingest's injection marker now travels with body chunks (inline
fenced wrapper, not frontmatter-only); company-brainify's history-rewrite
backup moves to a non-volatile private location with pre-push
re-verification and retention cleanup; the 17 imported manifest entries
get real descriptions (a block-scalar parsing slip) with a test pinning
description prose and plugin-array uniqueness; check-skill-refs becomes
cwd-independent, validates relative markdown links, and warns visibly on
an empty CLI command set (5 new tests); the commit gate fails loudly on
a regenerated-but-unstaged lock, single-quotes its inline lint script,
and rejects missing lint paths; ladder attribution, checkpoint-hook
bypass, frontmatter-contract notes, curation + misroute runbook docs,
the brain-first API-pull rule, and negative routing fixtures for eight
skills round out the batch.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(skills): adversarial-review hardening — trust boundaries, closure, honest contracts

From the ship pre-landing + adversarial + red-team passes (all findings
folded):

Untrusted content: a shared conventions/untrusted-content.md (fetched
text is data, never instructions) referenced from every skill that
fetches or imports external text — fact-check most critically (a fetched
page is never authority to rewrite a brain fact). conversation-archive
gains a mandatory secret+PII redaction pass before any page is written.

company-brainify: the destructive strip now sanitizes a staging copy
behind the data-loss-gate card (personal brain untouched); the history
purge derives its path set from the full sanitized scope, runs only
against the shared repo (never sync.repo_path), stages under a
non-volatile backup dir with a pre-push restore check, and logs the
deletion to the personal brain, not the shared one.

Downstream closure: ask-user and brain-taxonomist are bundled (three new
skills delegate to them); remaining host-only references are prose, not
links; a membership+closure test makes a bundled skill referencing an
unshipped skill a build failure.

Honest contracts: brain-link-discipline is marked mutating (it commits
and pushes) and only sends its token to the issuing host; inert priority
markers removed; citation-graph-ingest's writes_to dropped; concurrency
and slug-collision limits documented for daily-task-manager,
bulk-ingestion, conversation-archive, and blog-ingest; the self-
authorizing shell-jobs prefix removed in favor of worker-side
authorization.

Gate hardening: the commit gate compares the staged lock blob and runs
the plugin-manifest tests; check-skill-refs scans jsonl for donor
remnants, tolerates CRLF, and rejects flag-shaped option values.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* v0.45.6.0 feat(skills): giftable-skills import wave — 17 new production skills + 8 upgrades

Grows the built-in pack from ~52 to 69 skills: the trust layer
(correction-pipeline, data-loss-gate, fact-check, brain-ingest-gate),
team-brain sanitization (company-brainify), typed citation-graph
ingestion, disciplined bulk/feed/conversation ingestion, and operational
skills (measure-before-you-fix, context-audit, skill-autobench,
resolve-before-asking, brain-link-discipline, draft-in-voice,
research-compendium), plus meeting-ingestion/skillify/eiirp/
minion-orchestrator/concept-synthesis/reports/briefing/daily-task-manager
upgrades and a new skill-ref integrity gate + plugin-curation record.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat(skillpack,doctor): skill currency + declared preconditions — the migration harness now examines skills

The upgrade/migration path was DB-only for skills: schema migrations never
touched them, and skill sync was manual/advisory with new skills hidden
from the post-upgrade sweep. This makes skill currency and per-skill setup
first-class.

Currency (capability A): src/core/skillpack/skill-currency.ts classifies
every bundled skill against the install as new / drifted / current, by each
skill's OWN files (shared conventions on disk no longer misclassify a new
skill as drifted). `gbrain skillpack status` reports it; `gbrain skillpack
sync` scaffolds only the new ones and never overwrites local edits; the
post-upgrade sweep surfaces new skills with the sync command; `gbrain
doctor` gains a `skill_currency` check (WARN when new skills are available,
drift stays advisory).

Preconditions (capability B): a `requires:` frontmatter field
(source / dir:<path> / config:<key> / pages:<n>), a pure DI-seam checker in
src/core/skillpack/preconditions.ts, `gbrain skillpack setup <skill>` for
the static list + hints, and a `skill_preconditions` doctor check that
verifies them live against the connected brain. Annotated only the two
skills with genuine preconditions (citation-graph-ingest needs a corpus;
skill-autobench needs the conversations/ archive).

Semantic skill search (capability C) is deliberately deferred as its own
subsystem (tenancy + source isolation + embedding backfill) — filed in
TODOS, not crammed in unreviewed.

Tests: skill-currency, skill-preconditions, skillpack-status (31 new
assertions). doctor + skillpack stay engine-safe (currency is filesystem-
only; live precondition checks skip cleanly without a brain).

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(doctor,skillpack): categorize new skill checks, refresh flag registry, sweep test + noise gate

CI on the pushed feature surfaced three real in-branch failures:
- doctor-categories: register skill_currency + skill_preconditions under
  SKILL_CHECK_NAMES (every doctor check must be categorized).
- flag registry: doctor's import of findGbrainRoot pulls bundle.ts (which
  runs git rev-parse --verify) into its flag scan; regenerated the
  known-flags allowlist to match (harmless over-inclusion, per the
  generator's design).
- upgrade sweep: header renamed to 'Skillpack sweep (post-upgrade)'; new-skill
  surfacing gated on the host having scaffolded at least one skill, so a
  zero-skill (opted-out) host stays silent instead of getting 'N new skills'
  on every upgrade. Tests updated + a case added locking the surfacing.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

---------

Co-authored-by: Claude Fable 5 <noreply@anthropic.com>
v0.45.6.0
2026-08-12 10:30:56 -07:00
Garry TanandClaude Fable 5 99dd1a083c v0.45.5.0 feat(autopilot): brain currency — honest daemon health, migrate quiesce fence, keyless scheduler chain (#4030)
* docs(designs): agent-bootstrap plan + design docs (normative, review-absorbed)

The scrubbed, in-repo sources of truth for the gbrain bootstrap wave:
AGENT_BOOTSTRAP_DESIGN.md (product scope/sequencing) and
AGENT_BOOTSTRAP_PLAN.md (implementation; all review-finding IDs inlined).

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat(bootstrap): format spec, question bank, identity templates, bundled assets

agent.json manifest (format_version 1, initialized sentinel) + machine-local
install receipt [CX2-1, CX2-12]; 12-question/6-required interview bank with
consent keys and a persist:false sink for the optional provider key [CX2-13];
ten {{TOKEN}} identity templates (generic, adapted to gbrain ops — gates call
recall/query/put_page, write-through-ops rule, keyless agent-authored facts,
silence contract); assets embedded compiled-binary-safe via file-type imports
[ENG-6].

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat(bootstrap): runbook, README paste block, bootstrap guide, TODOS entries

BOOTSTRAP_FOR_AGENTS.md (agent-driven install runbook: CLI phase list is the
source of truth, never-invent rules, Codex approvals preflight, keyless posture,
failure-modes table, version stamp for the skew check); README gains the
full-agent paste block pinned to latest-stable inside the Claude Code/Codex
quick start (memory-only tier stays); docs/guides/bootstrap.md carries the full
install/security/consent/degradation/uninstall contract.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* docs(designs): spike instrument for the bootstrap wave (build order 0)

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat(bootstrap): interview + render engines

Interview gate with read-back confirm-hash (any later answer change clears the
confirmation — the hostile single-batch case is structurally impossible),
per-answer provenance, caps + escaping at set time, config-sink routing for the
provider key; renderer with hard-fail token sweep, subordinate fencing of
principal input, never-clobber + backups, deterministic minimal mode for the
template repo, scaled byte floors. 58 unit tests.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat(bootstrap): private-repo lifecycle — repo create, attach, uninstall, run lock

gh-gated private repo creation with API-verified privacy (rate-limit distinct
from public), refuse-foreign-origin with attach as the sanctioned path, atomic
bootstrap mutex (pid liveness + age + token), receipt-keyed uninstall that
never wholesale-deletes the gbrain home and only offers --delete-brain for a
brain it created; read-only PGLite lock probe (never opens the engine).
54 unit tests, injectable exec seam throughout.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat(release): latest-stable ref, template-repo publish job, bootstrap CI guards

release.yml advances the latest-stable tag only after assets publish (the paste
block's permanent ref — copies in the wild never rot) and gains a PAT-gated
publish-template job verified against the vendored tree; two skip-graceful
guards (sanctioned-ref + runbook stamp; template/token bijection + placeholder
assertion + generator byte-diff) wired into verify; README + runbook re-admitted
to the CI cache hash; vendored deterministic template tree generated.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat(context): IPC v2 turn_context + 8KB assembly + visibility resolver + session identity

Discriminated-union IPC with handler map, protocol echo (stale-serve detection),
shared-secret gate, server-side source binding, per-kind budgets; turn-context
assembly (reflex pointers + volunteered pages + world-only hot facts) under a
data-not-instructions envelope trimmed to the harness's 10KB hook-output cap;
facts.default_visibility resolved through one helper at all four sites (explicit
caller wins, typos fail closed); typed sessionId threads _meta.session_id into
the hot-memory cache key. 50 new tests; 180 adjacent tests confirmed green.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat(persistence): secret-scan, gbrain sources push, durability unification

Pattern secret scanner (own runtime allowlist, redacted previews, corpus-write
redaction mode); sources push runs the whole scan→stage→commit→pull→push
sequence under one cross-platform lock (mkdir-atomic, pid+age+token) with a
deny-glob backstop, commit-first divergence-safe pull, refuse-unverifiable
visibility, and push-status telemetry; gbrain-home choke point unifies
GBRAIN_HOME semantics with config (0700); durability is parent-repo-aware and
rotates its push log at 0600. 35 new tests; 200 existing green.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(sources): harden/pull gates accept sources inside a parent git repo

The bootstrap workspace registers brain/ (a subdirectory) as the source; the
durability core already resolves the repo root, so the command gates now check
inside-a-repo rather than .git-right-here [CX2-3].

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat(serve): resident maintenance sweep + keyless capability probe

The lock-owning serve process now closes the persistence loop: startup (3s
post-connect, best-effort, unref'd) and idle (10-min quiet intervals through
the injectable timer seam) sweeps run facts-fence reconciliation, deterministic
link/timeline extraction over recent workspace pages, and spend-gated corpus
ingest (skipped keyless — agent-authored fences cover it). gbrain sweep --once
is the trusted CLI seam bootstrap verify uses. Capability probe renders the
honest keyless/keyed report. Full reuse of the cycle extractor + extract cores;
26 new tests, neighbors green.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat(hooks): engine-free gbrain hook command, settings writers, transcript parser

Four hook events (session-start digest + crashed-session recovery push,
user-prompt turn-context injection under an 800ms deadline and the 10KB cap,
stop buffers, session-end corpus write with redaction/retention/dedup +
best-effort push); structural JSON settings merger keyed by a _gbrain marker
(foreign hooks and permissions survive); dated host-spec registry; Claude Code
.jsonl parser as a spec-target with a scrubbed 7-shape fixture. Heartbeat is
counters-only by construction. 59 tests; zero engine modules in the import
graph.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* docs(bootstrap): cross-link the full-agent path from the connection docs

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat(bootstrap): dispatcher, verify, status — the command assembled

gbrain bootstrap {status,interview,render,repo,hooks,verify,uninstall,attach}:
engine-free except verify (owns its engine, in-process sweep — no live-serve
conflict); phase list is the TS source of truth with install.jsonl telemetry
and the support blob; verify's fail-soft check suite covers the real write path
(put_page → write-through file → sweep → graph floor → recall), passes keyless,
persists snapshots, and ends with the first-run tour. cli.ts wired per the
three-touchpoint rule; doctor gains the bootstrap check group (silent on
machines with no bootstrap state). 28 new tests; 353 adjacent green.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* docs: KEY_FILES bootstrap cluster + CLAUDE.md dispatcher row (+ build:llms)

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* test(bootstrap): e2e pins — hook-under-live-serve, attach, degraded modes, compiled binary, Docker harness

The permanent pins: a real serve holds the PGLite lock while the engine-free
hook completes (and a direct engine open provably throws LiveServeLockError);
stale-socket fail-open; machine-2 attach with marker-keyed hook repair;
decline-everything installs verify green with every degradation named; the
compiled binary renders bundled templates in an empty cwd. Offline Docker
harness (networkless, read-only) gated into heavy-tests.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(bootstrap): register doctor check categories + system-of-record allow comments

The six bootstrap doctor checks join OPS_CHECK_NAMES; the sweep's batch link/
timeline inserts carry the explicit extract-path allow comments (the sweep IS
the extraction path for workspace pages).

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(test): shard wedge cap tracks suite growth (1500s -> 1800s)

At ~9000 tests a healthy shard finished at 1466s and two progressing shards
were false-killed at the old cap; 1800s restores ~25% headroom over the
slowest observed healthy shard. Real hangs still hit it.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* test(ci): cache-hash policy — README + runbook edits must invalidate [C2]

The old deny-list assertion predates the paste block; README.md and
BOOTSTRAP_FOR_AGENTS.md are policy-doc re-admissions now, so their edits must
change the hash (a paste-block edit shipping under a cached green was the C2
hole).

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(test): classify post-suite exit-hangs as warn-pass; file the leak forensics

A shard killed by the wedge watchdog with every assigned file started and zero
fail markers did all its work and leaked a handle at exit — pre-existing and
master-reproducible (P1 TODO carries the full bisect forensics). Bun's per-test
timeout turns a hung test into a (fail), so the classifier cannot mask one.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(test): shard cap 2400s — the count-balanced heavy shard needs it under contention

Observed: the heavy shard still progressing 22s before an 1800s kill while
siblings finish at 1150-1550s (split balances file count, not weight). Filed
the load-sensitive WAL-repair flake (pre-existing, master's v0.42.75.0 wave).

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* test(bootstrap): quarantine env-mutating suites to the serial lane

check-test-isolation R1: six new files mutate GBRAIN_HOME/env at module scope —
the serial lane (one process per file) is the guard's prescribed home for them.
All 114 tests pass post-rename.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* docs(readme): per-harness install sections — Codex, Claude Code, then OpenClaw/Hermes

Each harness gets its own complete paste-block section (desktop app first,
terminal noted — Claude Code CLI is the identical harness; Codex CLI works
pull-based today); the OpenClaw/Hermes platform path keeps equal weight with
its one-click deploys and INSTALL_FOR_AGENTS block intact; memory-only and
remote-connect tiers consolidated under 'Lighter ways in'. Supersedes the
review's D5 ordering by user direction; stale heading references updated.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* docs(readme): Codex as the recommended first step; OpenClaw/Hermes framed as-intended, high-cost

The install section now routes newcomers explicitly: Codex first
(subscription-priced, nothing to deploy), OpenClaw/Hermes as GBrain used the
way it was designed — always on, at real server + API cost.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix: doc-audit code chasers — broken recovery hints, stale op description, auto_link key

Four small code fixes surfaced by the markdown accuracy audit:
- doctor's auto-RLS recovery hint pointed at `apply-migrations --force-retry 35`,
  which cannot work (--force-retry targets the vX.Y.Z orchestrator registry, not
  the numeric schema MIGRATIONS array). Hint now points at the recreate SQL in
  docs/guides/rls-and-you.md; test pins against regression.
- v0_11_0 migration printed the same broken-mechanism class of hint
  (`config set minion_mode` writes DB config nothing reads); now names
  `apply-migrations --mode` + preferences.json, the real setter.
- submit_job's op description hardcoded a stale handler list; now points at
  registerBuiltinHandlers as the source plus the --follow discovery trick.
- `auto_link` added to KNOWN_CONFIG_KEYS: read by link-extraction, reconcile-links,
  and sweep, and documented as the off-switch in brain-ops/maintain, but the
  allowlist rejected `config set auto_link false`.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* docs: repo-wide accuracy + MECE reform from the 9-bucket markdown audit

A code-grounded audit of every markdown file (root, architecture, guides,
mcp, tutorials, docs-root, operations/eval/designs, skills, recipes) followed
by a fix wave with per-bucket ownership. Four classes of change:

Accuracy — every documented command/flag verified against src/ before writing:
dead commands replaced with working ones (pages purge-deleted, jobs watch
--follow, gbrain restore, import-based Obsidian flow, space-separated --scopes,
real thin-client recipes, working isolation verification, real supervisor
restart procedure, curl-based ngrok health check, real minion_mode setter);
count drift fixed with rot-proof phrasing (100+ ops, 50+ bundled skills via
skills/manifest.json, 140+ engine methods, KNOBS_HASH_VERSION pointer instead
of hardcoded versions); stale claims corrected (search-mode defaults, RETRIEVAL
pipeline order incl. autocut, sentinel rules, refusal-list mechanism, engine
snapshot, shard cap 2400s + EXIT-HANG classifier in TESTING.md, latest-stable +
publish-template documented in RELEASING.md as release.yml promises).

MECE — one home per concept, pointers elsewhere: test isolation → TESTING.md;
OAuth registration + --bind/--public-url lore → DEPLOY.md; mode bundles →
guides/search-modes.md (the home the CLAUDE.md dispatcher always promised);
merge contract → schema-packs.md; WAL ladder → ENGINES.md; quiet-hours →
quiet-hours.md; capture taxonomy → entity-detection.md; person-page taxonomy →
compiled-truth.md; brain-first protocol → brain-first-lookup.md; refresh
semantics → refresh-algorithm.md; KEY_FILES.md deduplicated (58 extension
entries merged, one entry per file); infra-layer.md rewritten as a pointer page.

Privacy — placeholder sweep across guides, docs, skills, and recipes per the
iron rule; per-release narration stripped from reference docs (current-state
prose only).

Bootstrap coverage — AGENTS.md pointer, RESOLVER routing row, INSTALL.md path,
tutorial cross-links, keyless-mode sections in spend-controls/headless-install.

skills.lock.json regenerated; llms.txt/llms-full.txt rebuilt. Gates: verify
36/36, typecheck clean, doctor 96/96, skills-integrity + resolver + build-llms
+ config-set + migrations all green.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* docs(readme): refresh production-brain stats to current brain-repo counts

155,795 pages / 24,589 people / 5,340 companies, counted from the brain
repo's current HEAD; the "100K-page brain" framing moves to 150K to match.
Cron-fleet count unchanged (its store lives on the deployment host, not in
the repos available for verification).

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(scan,push): modern OpenAI/Voyage key patterns, scan staged blobs not disk

- secret-scan matches sk-proj-/sk-svcacct-/sk-None- and pa- Voyage keys
  (the bare sk- pattern missed every current OpenAI key format).
- workspacePush stages first, then scans the staged index blobs via
  git cat-file, closing the scan-then-stage TOCTOU where a file changed
  between snapshot and commit shipped unscanned.
- shared binary-sniff helper, memoized glob regexes, atomic push-status
  write, and tests for pull_conflict + gitignored deny-match paths.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(ci): regenerate flag registry for new commands, harden shard classifier + release token

- cli-flag-registry.generated.ts regenerated: bootstrap/hook/sweep and
  sources push --message/--allow-unverified-remote were missing, so the
  strict #2185 validator rejected real invocations and skipped the new
  commands entirely.
- EXIT-HANG shard classifier now requires every assigned file to have
  started before warn-passing a watchdog kill (was fail-open).
- release.yml passes TEMPLATE_REPO_PAT via http.extraheader, off the argv.
- compiled-binary e2e fails loud in CI instead of a silent permanent skip.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(hook,sweep,ipc): non-blocking hook pushes, bounded sweep + cache, source-bound resolve

- session-start/session-end no longer run synchronous git + inline push
  inside their self-deadline; a detached child does the push and the hook
  returns immediately (blocked Claude Code startup for minutes on a dirty
  tree before).
- serve sweep drops the unbounded listAllPageRefs, resolves only candidate
  targets, claims corpus files atomically (no double-LLM-spend race), and
  caps the fence LIKE scan; heartbeat writes are O_APPEND with rare compaction.
- hot-memory cache evicts expired entries and bounds entry count (the key is
  caller-controlled via _meta.session_id).
- v1 resolve IPC honors boundSourceId like turn_context; turn-context runs
  its arms concurrently. doctor reads push/heartbeat thresholds from hook.ts.
- new tests: doctor bootstrap checks, hook push-gate + deadline, concurrent
  sweep claims, cache eviction, bound-source resolve.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(bootstrap): origin-ownership gate, world visibility, collision-safe source id, consent + templates

- repo adoption requires an exact receipt repo_url match or authed-owner
  check (undefined repo_url was a wildcard); create verifies privacy BEFORE
  the first push.
- verify sets facts.default_visibility=world if unset, so agent-authored
  facts surface in per-turn context (they defaulted private before).
- source_id derives a path-hash suffix when 'workspace' is taken by another
  checkout; every consumer reads manifest.source_id.
- skipped HOOKS_CONSENT now declines (was falling through to default yes);
  --minimal refuses on an initialized manifest; tilde fences escaped.
- MCP registration pins --surface full; status hard-fails a public origin
  (template door); receipt writers guard against newer/corrupt receipts;
  uninstall only claims brain-deleted after a real rm.
- templates ship jobs disabled + provider-consent + support-relay lines;
  soul-audit re-runs over the shared interview bank. TODOS: 11 follow-ups.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(security): close adversarial-review findings — scan fails closed, whole-PEM redaction, bound repo push

Cross-model adversarial pass (Claude + Codex) on the bootstrap wave:

- secret scan fails CLOSED: an unreadable, oversized, or binary staged blob
  now blocks the push (blocked_unscannable, exit 5) instead of committing
  unscanned; only a confirmed staged deletion is skipped. This was the
  headline "block secrets before they leave the machine" property failing open.
- private-key redaction spans the whole PEM block (header+body+footer), not
  just the header line — the base64 body no longer survives into the corpus
  the sweep sends to an extraction provider.
- bootstrap repo commits the workspace (secret-scan-gated) before the first
  push and verifies the remote actually received it, so a push-fail retry
  can't adopt an empty remote as success.
- privacy verify is re-bound to origin immediately before push (a concurrent
  origin rewrite between verify and push is refused).
- session-end corpus write is atomic and clears the stale ingested/in-progress
  sidecars so a resumed session's appended transcript is re-ingested.
- public-origin refusal enforced at render (not only status); MCP "already
  registered" is verified to target this workspace, not blessed blindly;
  verify probe cleanup scopes deletes to its own slugs, not a token substring;
  allowlist fingerprint floor raised 8→16 hex.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* v0.45.0.0 feat(bootstrap): paste-in personal-agent install for Codex + Claude Code

Turns a Codex or Claude Code session into a persistent personal agent:
interview-rendered identity files, a local PGLite brain, per-turn context via
serve IPC (Claude Code hooks / Codex pull protocol), session-triggered
persistence, and a private GitHub repo as the agent's portable body. Keyless-
first (the harness model is the LLM; one optional key adds embeddings +
extraction). New `gbrain bootstrap` command family + `gbrain hook` + `gbrain
sweep`; doctor bootstrap health checks; latest-stable distribution ref +
template-repo publish job. Opt-in, additive — existing installs untouched.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix: regenerate flag registry for security-fix flags; drop fabricated gbrain capabilities doc ref

CI caught two real failures under the merged state:
- the flag registry lagged the blocked_unscannable/exit-5 flags the security
  round added, tripping the #2185 freshness guard.
- headless-install.md described the keyless capability report as a
  `gbrain capabilities` command, which the #3502 doc-command resolver
  rejects — reworded to prose (the real surface is bootstrap verify's report).

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* docs: sync KEY_FILES + bootstrap plan to security-fix behavior

Cross-referenced the security-fix round against the reference docs and
corrected the drift those commits introduced:

- workspace-push.ts entry: stage-FIRST-then-scan order (the TOCTOU fix),
  fail-closed blocked_unscannable, and the sources-push status -> exit-code map.
- hooks.ts entry: MCP registration pins `serve --surface full`.
- hook.ts entry: session-start/session-end pushes run in a detached child
  (non-blocking); atomic corpus write clears stale sidecars.
- bootstrap.ts entry: render hard-refuses a public origin (template door).
- verify.ts entry: source_id collision resolution (workspace-<path-hash>).
- AGENT_BOOTSTRAP_PLAN as-shipped delta note for the scan/stage reorder.

llms bundle unchanged (KEY_FILES is link-only); build:llms and
test/build-llms.test.ts green.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(ci): silence SC2016 on the intentional askpass literal in release.yml

The one-shot GIT_ASKPASS script must contain literal $1 and
$TEMPLATE_REPO_PAT so they expand when /bin/sh runs it at git's credential
prompt, not when the outer shell writes the file — single quotes are correct.
Add a scoped shellcheck disable so actionlint passes.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(skills): declare 'bootstrap my data' trigger in cold-start frontmatter

The doc reform added 'bootstrap my data' to cold-start's RESOLVER.md row (to
disambiguate data-bootstrap from agent-bootstrap) but not to the skill's own
frontmatter triggers, tripping the RESOLVER↔frontmatter round-trip contract
(resolver.test.ts). Declare it; regenerate skills.lock.json.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat(bootstrap): default per-turn hooks + search mode ON without a prompt

Installing gbrain for your coding agent IS the consent for the behaviors that
make it work, so stop re-litigating them with install-time questions whose
"no" defeats the product:

- Per-turn hooks (Claude Code) install ON by default — no prompt. Off-ramps:
  `--no-hooks` at install, `GBRAIN_HOOKS=0` at runtime, `bootstrap uninstall`.
  The "hooks installed" line now surfaces the kill switch so default-on is
  never silent. A persisted HOOKS_CONSENT=no (interview --skip) still declines.
- Search mode defaults to `balanced` silently (nobody knows the modes at
  install; `gbrain search modes` changes it any time).
- MCP scope stays the ONE deliberate prompt — project vs user is a real
  cross-repo privacy choice, not friction.

Marks the two consents `silent: true` in the question bank (new QuestionSpec
field), rewrites the runbook phases so the agent no longer asks them, adds the
`--no-hooks` flag (+ registry regen), and adds default-on / opt-out tests.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* test(bootstrap): real end-to-end coverage — cross-session recall, per-turn content, Codex door, realistic corpus

Closes the seven e2e gaps a coverage audit surfaced: the plumbing was
well-unit-tested but the product claims ("Codex works, context shows up every
turn with real content, it remembers across restarts, machine two recovers,
Postgres works") were unproven end to end. Test-only wave — zero src changes.

- Hermetic synthetic corpus (test/fixtures/bootstrap-corpus/ + a loader helper):
  12 interlinked pages (52 edges, timelines), 12 world/private beliefs, 8 gold
  queries — curated from the gbrain-evals synthetic corpora, 100% placeholder
  names, so recall is asserted on a real multi-entity brain instead of a
  2-node self-planted probe.
- GAP1 magic moment: author a fact via the real write path, disconnect the
  engine, reopen against the same DB, recall it — a real session boundary, not
  verify.ts's same-connection SQL read-back. Plus a source-isolation assertion.
- GAP2 per-turn content: hook-under-serve Pin 1 now seeds a known fact and
  asserts its text lands in the injected block AND private beliefs never do
  (was: empty brain, empty_block accepted as a pass).
- GAP3 Codex door: assert the rendered AGENTS.md carries the Gate-3 brain-first
  pull protocol; make the fake codex shim implement `mcp get` so the [FIX7]
  target-verification can actually fail; the Docker cold-machine harness now
  exercises the hooks/MCP registration step instead of skipping it.
- GAP4 corpus recall: turn-context + verify graph-floor/qrels run on the real
  multi-entity brain with real edges.
- GAP5 attach: machine-two now re-ingests the cloned brain/ into a fresh DB and
  recalls a fact authored only on machine one — the multi-device payoff.
- GAP6 keyed + Postgres (env-gated): real embeddings prove semantic recall a
  paraphrase query can reach but keyless BM25 cannot; bootstrap verify drives a
  real Postgres engine (skipIf DATABASE_URL/keys absent).
- GAP7 persistence: session-end runs the REAL push (not the mocked seam) to a
  local bare remote and the remote receives the content; a planted secret is
  blocked at the gate; the 15-min cron installs and fires a scan-gated push.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* test(bootstrap): real-agent e2e — drive the actual claude + codex binaries end to end

Closes the audit's biggest gap ("no real harness ever drives a turn"). Adapts
gstack's PTY/headless agent harness to prove the bootstrap install + smoke work
against the REAL binaries, not PATH shims. Test/CI/docs only — zero src changes.

- test/helpers/agent-harness.ts: hermetic clean-room child env (ported from
  gstack; drops CONDUCTOR_/CLAUDE_/GSTACK_/MCP_/GBRAIN_, promotes
  GSTACK_ANTHROPIC_API_KEY→ANTHROPIC_API_KEY), real-binary resolvers + auth
  probes, headless `claude -p --output-format stream-json` and `codex exec
  --json` turn runners, a gbrain stdio MCP-config writer, and a keyless brain
  seeder. + a fixture-parse unit test (no binary needed).
- test/e2e/bootstrap-real-claude.serial.test.ts: real `gbrain bootstrap`
  install → REAL `claude mcp add` (verified via `claude mcp get`) → verify
  exit 0 → a real `claude -p --mcp-config --strict-mcp-config` turn that
  invokes mcp__gbrain__search and answers from the brain (proven: toolCalls
  include mcp__gbrain__search, final text carries the seeded fact).
- test/e2e/bootstrap-real-codex.serial.test.ts: same install with REAL `codex
  mcp add` into a real ~/.codex/config.toml + Gate-3 pull-protocol assertion,
  then a real `codex exec --json` turn surfacing the fact (MCP or the pull-
  protocol shell path). Bounded retry absorbs codex's occasional MCP-call
  cancellation without softening the fact-requiring assertion.
- Everything hermetic (temp HOME/CLAUDE_CONFIG_DIR/CODEX_HOME/GBRAIN_HOME;
  real ~/.codex auth copied read-only) and skipIf-gated so it self-skips
  cleanly where the binaries/auth are absent.
- heavy-tests.yml: gated `real-agent-e2e` job (nightly/label, never the PR
  shard; no-op on a runner without authed binaries).
- TODOS: compiled `gbrain` binary can't serve a PGLite brain (bun compile
  omits the WASM/extension payloads); harness falls back to `bun run` serve.

Verified against live claude 4.6 + codex 0.147.0: 15 pass / 0 fail; verify
36/36; typecheck clean.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(ci): real-agent-e2e job — bash array + --timeout (actionlint SC2086 + bun-test-timeout guard)

The real-agent-e2e job's file loop used an unquoted $FILES (SC2086) and ran
`bun test` without --timeout (check-bun-test-timeout guard). Switch to a bash
array and add --timeout=600000 (real-agent turns are slow; the tests self-skip
without authed binaries so it's a no-op elsewhere).

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(pglite): embed WASM + extension assets so the compiled binary can serve

A `bun build --compile` gbrain binary could not `serve` a PGLite brain: the
compile bundles JS but not PGLite's runtime payload (pglite.wasm, initdb.wasm,
pglite.data, vector/pg_trgm tarballs), so `serve` on PGLite died with a
bunfs/ENOENT. Now the assets ride inside the binary.

- src/core/pglite-embedded-assets.ts: embeds the five assets via
  `import … with { type: 'file' }` (the ENG-6 idiom) and exposes
  getEmbeddedPgliteOptions() → { pgliteWasmModule, initdbWasmModule, fsBundle,
  extensions:{vector,pg_trgm} }. WASM/fsBundle are consumed as bytes; the two
  extension tarballs are materialized to a content-addressed temp file (atomic,
  size-verified reuse) because PGLite reads them via fs.createReadStream, which
  cannot read a /$bunfs path. Unconditional (works in bun-run and compiled),
  so no fragile mode branch.
- src/core/pglite-engine.ts: static-import getEmbeddedPgliteOptions (engine
  path stays static per the engine-dynamic-import invariant); spread into both
  PGlite.create sites (initial + WAL-repair retry). The bunfs classifier stays
  as a backstop but no longer fires for a correct binary.
- scripts/check-pglite-embedded.sh (+ smoketest): compiles a focused binary and
  asserts it boots PGLite, CREATE EXTENSION vector/pg_trgm, and round-trips a
  page — wired into `bun run verify` (now 37 checks), check:all, and
  check:pglite-embedded. Fail-soft only when compile is unavailable.
- agent-harness.ts probeCompiledPglite now passes → the real-agent e2e uses the
  fast compiled MCP server. TODOS: the P2 "can't serve PGLite" item is closed.

Verified: fresh compiled binary ran `search`/`query` against a PGLite brain and
returned the seeded row (no bunfs/ENOENT); verify 37/37; pglite-engine 120/0
source-mode; typecheck clean; engine-dynamic-import + parity guards pass.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(source-health): wall-clock ceiling for content-relative staleness

A source whose stored content timestamp trailed its last sync reported
zero lag forever — the shape that let a dead sync daemon stay invisible
for 71 days. lagFromContentMs now ramps toward stale past a ceiling
(default 72h, GBRAIN_STALENESS_CEILING_HOURS / GBRAIN_SYNC_FRESHNESS_FAIL_HOURS)
instead of returning a flat 0; ramping rather than stepping keeps the
warn tier firing before the fail tier across sync_freshness,
federation_health, and gbrain status. The ceiling resolves once per
report (hoisted out of the per-source loops), and the numeric env
plumbing moves to a shared warn-once resolver (src/core/env-number.ts)
so doctor and source-health share one memo instead of warning twice.
Doctor's wedged-lock alarm prints minutes below one hour so a
fractional ceiling override cannot produce a "held the lock for 0h"
message.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(autopilot): heartbeat-truth status, self-disable guard, migrate quiesce fence

Status becomes honest and engine-free: a pure classifier maps heartbeat
age, markers, and install detection to not_installed/disabled/paused/
never_run/stale/fresh with exit codes 0/1/2, dispatched in cli.ts before
connectEngine so a live PGLite daemon's exclusive lock or a DB outage
cannot take down the alarm. Tolerance is six intervals (the adaptive
scheduler sleeps two between ticks on healthy brains; three flapped
false alarms), NaN-proof at both parse sites, and a cron'd status
monitor line no longer reads as an install.

The generated wrapper self-disables for real when its repo vanishes —
marker first, then supervisor-specific stop (launchctl bootout /
systemctl disable) since a bare exit 0 under KeepAlive is just a quieter
respawn loop — and requires three consecutive misses so a slow-mounting
volume cannot permanently kill a healthy install. Install and uninstall
clear both markers; wrapper artifacts resolve through gbrainHomePath
with GBRAIN_HOME baked in at install time.

gbrain migrate quiesces the whole write plane for its copy window: an
unconditional atomic pause-marker claim doubles as the migration mutex
(a live holder, a foreign hold, or an unwritable marker all abort;
orphan adoption is renameSync compare-and-claim), in-flight writers
drain via the DB lock table plus active-job count (supervisor presence
locks excluded) before enumeration, minion workers stop claiming queued
jobs while the marker is parked, cleanup registers at claim time, the
daemon self-clears a dead migrate's orphan, and after a clean config
flip the daemon detects the engine identity change and relaunches onto
the new engine instead of syncing into the abandoned one indefinitely.
Malformed connection URLs classify as operator config verdicts rather
than crashes, and torn config reads cannot spuriously restart the
daemon.

Marker paths, the launchd label seam, and the pid-ownership primitives
live in the new leaf module src/core/autopilot-paths.ts so migrate and
the worker never import the autopilot command surface (flag-registry
pooling); the regenerated registry reflects the new one-level imports.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(embed,sync): keyless stale embed refuses cleanly; typechange statuses; test-home isolation

The documented agent-scheduler chain (sync, then a stale embed) exited 1
on every keyless brain because EmbeddingDisabledError fell through to a
blanket exit. A bare stale run now refuses cleanly via the pure
isKeylessStaleRefusal predicate (stderr hint, zero-failure result);
explicit asks — a slug, a slugs list, the all flag — still exit 1,
mirroring the dispatch precedence where a slugs list wins over stale.

buildSyncManifest handles the T/U/C git statuses instead of silently
dropping them (typechange routes to modified; the file-to-symlink
staleness residual is documented and filed). Status reports gain
hours_since_last_sync so the ceiling-ramped staleness_hours stops
doubling as the human-facing wall-clock number.

The sync-failures ledger honors GBRAIN_SYNC_FAILURES_DIR and the test
preload (bunfig) points it at a scratch dir, so test runs stop writing
failure rows into the developer's real brain home.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* test(e2e): real-launchd lifecycle + agent-scheduler contract harness tier

Two serial-lane e2e files that assert behavior, not artifacts: a
launchd lifecycle suite (shimmed supervisor on every platform; REAL
launchd on darwin under a per-run unique label, own-label cleanup only)
driving install, self-disable via three strikes, status exit codes,
reinstall, and uninstall through the actual CLI; and an
agent-scheduler contract suite that runs the documented sync-and-embed
shell chain end-to-end against a keyless brain, including the
pull-failure case that must break the chain and the heartbeat that must
advance on quiet re-runs.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* docs: KEY_FILES current-state for the brain-currency wave; BRAIN_CURRENCY design doc

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(migrate,minions): ownership-conditional pause release + post-claim fence re-check

Round-4 adversarial hardening on the quiesce protocol. Orphan adoption
verifies identity AFTER its atomic rename — a racer that completed the
whole adopt-and-rewrite in the read-to-rename gap gets its live marker
restored no-clobber instead of stolen. Marker release compares content
before unlinking, so a claim that changed hands can never delete the new
owner's fence mid-copy. On the worker side, a job whose claim committed
after migrate's drain probe is released back to the queue un-run
(delayed one minute, conditional on our lock token) instead of executed
into the doomed source engine. The cross-host residual — a worker on
another machine never sees a local marker file — is filed as the
DB-visible-pause follow-up.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* test(autopilot): migrate the crontab wrapper-detection pin to the pure seam

The inline crontab.includes check this static pin matched became
crontabIndicatesAutopilotInstall; the pin now exercises the function
directly (wrapper line still detected) and asserts the detect path is
wired through it.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* v0.46.0.0 feat(autopilot): brain currency — honest daemon health, migrate quiesce fence, keyless scheduler chain

VERSION + CHANGELOG + TODOS for the brain-currency PR-A wave, plus the
version-stamped bootstrap runbook and vendored template regen.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* docs: sync documentation for v0.46.0.0

The brain-currency wave shipped new user-facing surface the guides did not
carry: the trustworthy autopilot --status exit codes (0/1/2 + paused),
the keyless-safe sync-and-embed chain, and the migrate quiesce fence.

- docs/guides/live-sync.md: keyless clean-refusal note on the embed --stale
  primitive; new "gate on the daemon's heartbeat" verify item with the
  exit-code contract.
- docs/guides/cron-schedule.md: the recommended autopilot health-gate cron
  line (the status classifier already special-cases this monitor line so it
  never reads as an install).
- docs/ENGINES.md: migrate --to now documents the pause-marker mutex, worker
  job-pickup fence, DB-lock drain (GBRAIN_MIGRATE_QUIESCE_SECONDS, default
  300), crash-safe release, and daemon relaunch after the flip.
- docs/operations/headless-install.md: keyless mode's "refuse cleanly" claim
  made concrete — the documented chain exits 0 on a bare stale embed.
- INSTALL_FOR_AGENTS.md Step 7: health-gate bullet + keyless-safe chain note.
- skills/maintain/SKILL.md: autopilot check now teaches the exit-code
  semantics and the --json report fields.
- docs/TESTING.md: inventory entries for the two new harness-tier serial
  suites (real-launchd lifecycle, agent-scheduler shell-chain contract).
- llms-full.txt regenerated (TESTING.md is inlined in the bundle).

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* docs: cross-model doc-review fixes for v0.46.0.0

Round two from the post-ship documentation review, checked against the code:

- CHANGELOG.md: two shipped fixes were missing from the 0.46.0.0 entry
  (git typechange/unmerged statuses no longer dropped by sync; a wedged
  lock holder past the staleness ceiling now fails doctor with the
  break-lock remedy), and the env-resolver bullet over-claimed its
  coverage — narrowed to the doctor + staleness-threshold vars it
  actually serves. Additive + accuracy only; no entries replaced.
- docs/guides/live-sync.md: Tricky Spots item for the staleness
  wall-clock ceiling (GBRAIN_STALENESS_CEILING_HOURS, default 72h,
  ramp-not-step) and the hours_since_last_sync status field.
- docs/ENGINES.md: the quiesce paragraph over-stated marker release —
  now describes the pid-checked orphan adoption, the daemon self-heal
  poll, and the confirm-the-pid manual step for daemonless hosts.
- docs/guides/minions-fix.md: the verify block's bare autopilot --status
  now notes the exit code is the verdict (and the set -e caveat).
- llms-full.txt regenerated.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* v0.45.5.0 chore(release): re-version 0.46.0.0 -> 0.45.5.0

Same release content; the version slots into the 0.45.x line per the
natural-next-off-master convention. VERSION, package.json, CHANGELOG
header, bootstrap runbook stamp, vendored template regen, lockfile, and
llms bundles all move together (trio audit green; stamp + template +
llms freshness guards re-run green).

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* chore(skills): refresh skills.lock version stamp for 0.45.5.0

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

---------

Co-authored-by: Claude Fable 5 <noreply@anthropic.com>
v0.45.5.0
2026-08-12 09:40:57 -07:00
Garry TanandClaude Fable 5 6fae2c10ff v0.45.3.0 fix(bootstrap): never offer MCP project scope on Codex — consent-flow honesty (#4029)
* fix(bootstrap): codex scope-note guard + scope-aware wire hint

runHooks: on --harness codex, print a stderr note when an explicit,
non-skipped MCP_SCOPE=project answer is persisted (raw readInterviewState
read, not the project-defaulting consentAnswer resolver) — reachable via
attach from a Claude Code machine or a pre-fix install. consentAnswer is
now shape-tolerant: a hand-edited non-string answer value falls through to
the bank default instead of throwing at a toLowerCase call site.
status.ts: the wire-phase resume_hint states the scope rule (Claude Code
consent, phase 3; Codex always user-global — no scope flag).
Tests: 7-case branch matrix on the note guard + wire-hint pin.

* fix(bootstrap): harness-scope the MCP consent prose (never offer project scope on Codex)

Runbook: the scope consent moves to phase 3 (Claude Code only, recorded with
interview --set BEFORE the read-back so the confirmation covers it — a
wire-time set clears the A8 confirm and regresses status); phase 6's Codex
bullet gains the counter-signal: Do NOT offer an MCP scope choice — codex
mcp add has no scope flag, registrations are always user-global.
Bank: MCP_SCOPE.question gets a read-aloud-safe "(Claude Code only. ...)"
prefix and phase moves wire -> interview to match.
Templates: ACCESS_POLICY's scope section becomes two static harness
paragraphs; CLAUDE.md stops conflating directory-based identity loading
with MCP scope. Vendored template-repo regenerated.

* chore(ci): pin the harness-scoping counter-signals (check-bootstrap-templates §e)

Three SKIP-GRACEFUL tripwires: the runbook must carry "Do NOT offer an MCP
scope choice" and "Claude Code only"; questions.json's MCP_SCOPE.question
must start with "(Claude Code only". Guard-test fixtures gain a compliant
MCP_SCOPE entry + pass/fail cases for each pin.

* docs: Codex user-global scope caveats + A8 consent-semantics follow-up TODO

Install table and KEY_FILES hooks entry now state the split: Claude Code
takes --scope (project default); Codex has no scope flag. TODOS gains the
deferred structural question (consent keys vs the A8 confirm gate).

* fix: pre-landing + red-team review hardening

Guard §(e): a valid-JSON bank missing its questions object now FAILS (it
silently passed both §a and §e); the pin also asserts MCP_SCOPE.phase is
'interview' so the schema half of the fix can't silently revert. Fixtures
for both + entry-vanished. consentAnswer says so on stderr when it discards
a malformed answer value (a silent fall-through could flip a damaged opt-out
to the permissive default) — pinned by a claude-code matrix case asserting
the receipt. Off-ramp texts gain the narrow `codex mcp remove gbrain`
alongside full uninstall (note, runbook, ACCESS_POLICY + vendored copy).
Cross-refs de-ordinaled (phase names, not numbers — master renumbers steps).
TODOS A8 entry gains the healing half (status can't distinguish consent-key
invalidation from tampering).

* fix: adversarial-review hardening — fail-closed consents + honest scope prose

consentAnswer: a present-but-unusable answer (non-string, empty, bare {})
now fails CLOSED to 'no' with a stderr note — a bank-default fall-through
could flip a damaged opt-out into consent (cross-model finding); 'no' is
every consent key's safe reading (no hooks, no cron, project scope). Pinned
by a malformed-HOOKS_CONSENT matrix case asserting hooks are declined.
Codex scope note: names the safe remediation (--skip MCP_SCOPE + reconfirm;
never --set user — the answer git-syncs to paired Claude Code machines and
would widen their scope) [codex review P2]. Prose states the user-global
registration's read+write reach honestly (runbook, ACCESS_POLICY + vendored).
Interview resume_hint carries the consent-recording step (the CLI channel a
resumed install actually reads). Guard §(e): unparseable questions.json now
FAILS instead of passing silently. TODOS: P1 filed for stdio dispatch scope
parity (pre-existing, surfaced by the adversarial pass).

* chore: bump version and changelog (v0.45.3.0)

Runbook stamp + vendored template-repo regenerated to match (the two
version gates check:bootstrap-tag and check:bootstrap-templates enforce).

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* docs: update project documentation for v0.45.3.0

KEY_FILES.md: bootstrap.ts entry carries the fail-closed consent
resolution + Codex stale-scope-answer note; CI-guards entry adds the
check-bootstrap-templates §(e) harness-scoping counter-signal pins.
bootstrap.md: degradation matrix Codex row states the no-scope-flag
reality (registrations are user-global). llms bundles regenerated
(byte-identical — these docs are linked, not inlined).

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* docs: cross-model doc-review fixes for v0.45.3.0

CHANGELOG: Codex off-ramps are removal commands, not narrowing; the
refresh recipe now covers both harnesses and names the re-confirm step
for pre-fix installs whose confirmation was invalidated. Runbook: the
user-scope tradeoff says read and write, matching ACCESS_POLICY.
bootstrap.md: degradation-matrix Codex row rephrased (lose the ability
to confine reach, not the reach itself). KEY_FILES: the section-(e)
description no longer implies placement pinning.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

---------

Co-authored-by: Claude Fable 5 <noreply@anthropic.com>
v0.45.3.0
2026-08-12 08:19:44 -07:00
Garry TanandClaude Opus 4.8 a996e42856 v0.45.2.0 fix(bootstrap): create-repo-first repo adoption + hardening (#4024)
* fix(bootstrap): harden create-repo-first repo adoption

`gbrain bootstrap repo` adopts an empty, private, personally-owned GitHub repo
the human created (create-repo-first), instead of only ever creating one. This
hardens the existing adoption branch:

- Empty-only adoption + pending_repo_url proof: a non-empty origin is refused
  (ORIGIN_NOT_EMPTY) unless it matches this workspace's pending marker (our own
  interrupted push). Never adopts a user's existing project from a git-ancestry
  guess, and never silently no-ops without pushing.
- Repo-local git identity is set on the adopt path too (fresh-machine commits).
- repo_url is recorded only AFTER a successful push (pending marker before);
  a failed push no longer looks "done" to `bootstrap status`.
- Pre-push secret scan also covers an already-committed tree; ls-files failure
  fails closed.
- assertOriginMatches binds BOTH the fetch URL and a configured push URL to the
  verified-private repo, so a foreign pushurl can't leak the workspace.
- disposition: 'created' | 'adopted' | 'reused' replaces the overloaded flag.
- Hook push-gate: the no-daemon session-end / recovery push is deferred until
  the repo phase records repo_url AND the current origin still matches it, so
  nothing is published to an unverified or redirected remote.

Adds ORIGIN_NOT_EMPTY / REMOTE_CHECK_FAILED error codes.

* docs(bootstrap): lead with the repo, document create-repo-first

README (Claude Code + Codex) now opens with "the folder you open becomes your
agent's private repo" and adds a "prefer to make the repo yourself?" callout for
the create-repo-first path (empty, personal-account repo). Updates the bootstrap
guide, the Claude Code MCP note, and the KEY_FILES / AGENT_BOOTSTRAP_PLAN
invariants to describe adoption instead of "foreign origins refused".

* v0.45.1.0 fix(bootstrap): create-repo-first repo adoption + hardening

Bumps VERSION/package.json to 0.45.1.0, adds the CHANGELOG entry, refreshes the
runbook + template-repo version stamps, and regenerates the llms bundle.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* docs(todos): file P2 follow-up — index-blob secret scan for bootstrap pushes

* ci(gitleaks): run the free CLI instead of the license-gated v2 action

gitleaks-action@v2 now enforces a paid GITLEAKS_LICENSE and fails the job
("missing gitleaks license") for accounts it can't validate over the API —
blocking every PR's merge gate. Replace it with the open-source gitleaks CLI
(pinned 8.30.1, checksum-verified against the release's own checksums file),
scanning the PR/push commit range with the committed .gitleaks.toml allowlist.
Same secret-scan coverage, no license wall.

* v0.45.2.0 chore(release): re-bump 0.45.1.0 -> 0.45.2.0

Re-target the release version at the user's request. Updates VERSION,
package.json, the CHANGELOG header + self-repair block, the runbook +
template-repo version stamps, the TODOS follow-up reference, and the llms bundle.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* test(perf): raise entity-card ratio ceiling 50x -> 100x (CI flake)

The RATIO GUARD asserted entity p99 <= 50x max(getPage p50, 1ms). On a fast
runner getPage p50 floors to 1ms and a normal entity p99 (~50ms) reads as ~52x,
tripping the gate even though absolute p99 (52ms) is well under the 100ms budget
— a p99 tail divided by a sub-ms median. At the 1ms floor, 50x also made the
ratio STRICTER than the test's own 100ms absolute budget. Raise the ceiling to
100x: still far below the >=200x O(N)-regression signal the guard exists to
catch, and consistent with (never stricter than) the absolute budget.

---------

Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
v0.45.2.0
2026-08-11 23:01:22 -07:00
Garry TanandClaude Fable 5 c2cc8b0207 v0.45.1.0 feat(context): hook-lane feedback loop + cross-turn dedupe for the harness hooks (#4025)
* refactor(context): extract pure gateVolunteeredPointers (no behavior change)

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat(context): volunteer-shaped resolve IPC — channel/cwd/volunteer fields, handler-result widening, server-side gate + validated source + delivery-point logging; listener on both engines

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat(cli): gbrain volunteer-hook — one-shot harness hook entry (IPC-first; Postgres-only fallback; startup-hook-exempt)

T0 evidence: a UserPromptSubmit hook's additionalContext is recorded in the
session transcript as a structured hook_additional_context attachment and
transcript_path is stable across turns — cross-turn dedupe reads ONLY those
attachments (never raw tail substrings). Live smoke: seeded brain + running
serve → pointer injected via IPC at 0.43s wall, turn 2 suppressed, one event
banked channel=claude-code.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat(recipes): claude-code-reflex + codex-reflex (experimental) hook adapters

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat(doctor): volunteer_channels per-adapter visibility

Engine-aware sibling of retrieval_reflex_health: groups
context_volunteer_events by channel (7d) so operators can see which push
adapters fire; message separates installed-but-unregistered from
registered-but-quiet; pre-v117 tolerant; info-only status.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat(context): hook-lane feedback loop + cross-turn dedupe — converge cathedral-3 onto the #3975 harness hooks

The #3975 hook lane volunteered pages invisibly (nothing logged to
context_volunteer_events) and re-volunteered the same page every turn an
entity was mentioned (no priorContextText). This convergence ports the
cathedral-3 branch's two gap-fills into the blessed lane and retires its
parallel surface:

- transcripts: parseTranscript extracts injectedContextBlocks (structured
  hook_additional_context attachments — the T0-verified recorded shape of
  our own injections; never raw-turn substring matching)
- hook user-prompt: feeds those blocks as priorContextText (volunteer once
  per session, not once per mention) + sends a feedback-loop channel
  (--harness <claude-code|codex>, default claude-code); hook joins
  STARTUP_HOOK_SKIP_COMMANDS (per-prompt check-update spawn class, grep-pinned)
- turn-context: result exposes post-trim volunteered survivors
- resolve-ipc: additive TurnContextRequest.channel + onTurnContextDelivered
  seam (fires post-write only — abandoned blocks are never counted)
- serve: delivery callback logs volunteered pages + pointers per channel
- doctor: volunteer_channels check (per-channel 7d visibility; separates
  installed-but-unregistered from registered-but-quiet; pre-v117 tolerant)

Retired (never released): gbrain volunteer-hook, hook-adapters.ts,
claude-code-reflex + codex-reflex recipes, the volunteer-shaped resolve wire
extension. Kept: gateVolunteeredPointers extraction, VolunteerChannel
claude-code/codex values, the real hook-transcript fixture.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* docs: regenerate llms bundles for the hook-lane doc updates

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* test: coverage for the hook-lane delivery wiring

Extract logTurnContextDeliveryFireAndForget into volunteer-events.ts so the
shipped serve callback is unit-testable (channel fallback, sessionId clamp,
pointer+page rows in ONE synchronous registration — the double dynamic import
could register the pending write too late to survive process exit). Direct
units for isVolunteerChannel, explicit-channel logDeliveredReflexPointers,
and the pure gate (idempotency pin; stale parity claim in its doc corrected).

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix: pre-landing review fixes — 7-reviewer batch

Multi-confirmed: volunteer_channels now runs on the LOCAL doctor path too
(buildChecks; docs pointed there); transient DB errors no longer misreported
as pre-v117; priorContextText deduped + 32KB-capped hook-side. Red team:
delivery counts reconciled against the hook heartbeat (CAUTION when mostly
degraded — write-accept isn't injection); IPC clamp drops advisory
priorContextText BEFORE any window turn; foreign hook_additional_context
blocks (no gbrain marker) excluded from dedupe input; engine-aware quiet
guidance (Postgres brains aren't told to chase hook registration); 2MB dedupe
horizon documented. Security: wire channel claims restricted to harness
channels. DRY: VOLUNTEER_CHANNELS single source, shared reflexPointerRationale,
SESSION_ID_MAX_LEN shared with the op clamp; dead channel param dropped from
logDeliveredReflexPointers. Tests: budget-trim volunteered invariant under
real trim pressure, poll/ordering-based delivery-seam tests (no fixed sleeps),
doctor branch + engine-parity-row tests, wiring source pins, cap pins;
fixture pruned to load-bearing lines (environment inventory removed).

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix: adversarial-review fixes — cross-model P1 + Claude adversarial batch

P1 (codex structured review + Claude adversarial, cross-model): the remote
run_doctor path now threads the caller's source scope into
volunteer_channels — a source-bound token can no longer see other sources'
activity counts/timestamps (must-never-violate source-isolation rule);
local trusted doctor stays brain-wide. Claude adversarial: IPC connection
handler gains a one-request re-entrancy guard (trailing bytes mid-await
double-processed the same line → duplicate handler work + duplicate
delivery logging); partial client-side trims now heartbeat as reason
'trimmed' (delivery-count drift visibility); heartbeat reconciliation uses
the same 7-day window as the counts + a 5-sample floor; one oversized
dedupe block no longer evicts all smaller ones (continue, not break);
quiet-channel guidance no longer claims old serves attribute hook traffic
to reflex (they log nothing); 'transient' claim softened to evidence;
marker-filter + unknown-channel-default comments state their honest limits.
Pins: scoped-query SQL/params, re-entrancy single-fire, updated wiring grep.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* chore: bump version and changelog (v0.45.1.0)

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* chore: restamp bootstrap runbook + regenerate vendored template repo for v0.45.1.0

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* docs: update project documentation for v0.45.1.0

Post-ship /document-release pass: fold the post-doc review fixes into the
reference docs (KEY_FILES: source-scoped remote volunteer_channels + heartbeat
reconciliation, 32KB-capped dedupe input, marker filter, IPC one-request
guard + clamp order), fix BRAINBENCH's now-stale memoryless-hook rationale,
and mark the doctor-check half of the push-context TODO shipped.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* docs: cross-model doc-review fixes for v0.45.1.0

Codex doc review against the shipped diff: push-context channel table gains
the harness-hook row (three-channels claim was stale), the guide states the
PGLite-socket topology limit and the bounded dedupe horizon, delivery-point
claims are hedged to match the code (write-accept isn't proof of injection;
the doctor reconciles against the hook heartbeat, which can't inspect
registration), BRAINBENCH's future-tense hooks-PR sentence updated now the
hook has landed, and the adapter-flip + resolver-channel TODOS reflect the
current lane count. llms-full.txt regenerated.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* docs(hook): document --harness in the user-prompt usage text

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

---------

Co-authored-by: Claude Fable 5 <noreply@anthropic.com>
v0.45.1.0
2026-08-11 22:45:44 -07:00
Garry TanandClaude Fable 5 d35c9c9e44 v0.45.0.0 feat(bootstrap): paste-in personal-agent install for Codex + Claude Code (#3975)
* docs(designs): agent-bootstrap plan + design docs (normative, review-absorbed)

The scrubbed, in-repo sources of truth for the gbrain bootstrap wave:
AGENT_BOOTSTRAP_DESIGN.md (product scope/sequencing) and
AGENT_BOOTSTRAP_PLAN.md (implementation; all review-finding IDs inlined).

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat(bootstrap): format spec, question bank, identity templates, bundled assets

agent.json manifest (format_version 1, initialized sentinel) + machine-local
install receipt [CX2-1, CX2-12]; 12-question/6-required interview bank with
consent keys and a persist:false sink for the optional provider key [CX2-13];
ten {{TOKEN}} identity templates (generic, adapted to gbrain ops — gates call
recall/query/put_page, write-through-ops rule, keyless agent-authored facts,
silence contract); assets embedded compiled-binary-safe via file-type imports
[ENG-6].

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat(bootstrap): runbook, README paste block, bootstrap guide, TODOS entries

BOOTSTRAP_FOR_AGENTS.md (agent-driven install runbook: CLI phase list is the
source of truth, never-invent rules, Codex approvals preflight, keyless posture,
failure-modes table, version stamp for the skew check); README gains the
full-agent paste block pinned to latest-stable inside the Claude Code/Codex
quick start (memory-only tier stays); docs/guides/bootstrap.md carries the full
install/security/consent/degradation/uninstall contract.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* docs(designs): spike instrument for the bootstrap wave (build order 0)

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat(bootstrap): interview + render engines

Interview gate with read-back confirm-hash (any later answer change clears the
confirmation — the hostile single-batch case is structurally impossible),
per-answer provenance, caps + escaping at set time, config-sink routing for the
provider key; renderer with hard-fail token sweep, subordinate fencing of
principal input, never-clobber + backups, deterministic minimal mode for the
template repo, scaled byte floors. 58 unit tests.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat(bootstrap): private-repo lifecycle — repo create, attach, uninstall, run lock

gh-gated private repo creation with API-verified privacy (rate-limit distinct
from public), refuse-foreign-origin with attach as the sanctioned path, atomic
bootstrap mutex (pid liveness + age + token), receipt-keyed uninstall that
never wholesale-deletes the gbrain home and only offers --delete-brain for a
brain it created; read-only PGLite lock probe (never opens the engine).
54 unit tests, injectable exec seam throughout.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat(release): latest-stable ref, template-repo publish job, bootstrap CI guards

release.yml advances the latest-stable tag only after assets publish (the paste
block's permanent ref — copies in the wild never rot) and gains a PAT-gated
publish-template job verified against the vendored tree; two skip-graceful
guards (sanctioned-ref + runbook stamp; template/token bijection + placeholder
assertion + generator byte-diff) wired into verify; README + runbook re-admitted
to the CI cache hash; vendored deterministic template tree generated.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat(context): IPC v2 turn_context + 8KB assembly + visibility resolver + session identity

Discriminated-union IPC with handler map, protocol echo (stale-serve detection),
shared-secret gate, server-side source binding, per-kind budgets; turn-context
assembly (reflex pointers + volunteered pages + world-only hot facts) under a
data-not-instructions envelope trimmed to the harness's 10KB hook-output cap;
facts.default_visibility resolved through one helper at all four sites (explicit
caller wins, typos fail closed); typed sessionId threads _meta.session_id into
the hot-memory cache key. 50 new tests; 180 adjacent tests confirmed green.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat(persistence): secret-scan, gbrain sources push, durability unification

Pattern secret scanner (own runtime allowlist, redacted previews, corpus-write
redaction mode); sources push runs the whole scan→stage→commit→pull→push
sequence under one cross-platform lock (mkdir-atomic, pid+age+token) with a
deny-glob backstop, commit-first divergence-safe pull, refuse-unverifiable
visibility, and push-status telemetry; gbrain-home choke point unifies
GBRAIN_HOME semantics with config (0700); durability is parent-repo-aware and
rotates its push log at 0600. 35 new tests; 200 existing green.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(sources): harden/pull gates accept sources inside a parent git repo

The bootstrap workspace registers brain/ (a subdirectory) as the source; the
durability core already resolves the repo root, so the command gates now check
inside-a-repo rather than .git-right-here [CX2-3].

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat(serve): resident maintenance sweep + keyless capability probe

The lock-owning serve process now closes the persistence loop: startup (3s
post-connect, best-effort, unref'd) and idle (10-min quiet intervals through
the injectable timer seam) sweeps run facts-fence reconciliation, deterministic
link/timeline extraction over recent workspace pages, and spend-gated corpus
ingest (skipped keyless — agent-authored fences cover it). gbrain sweep --once
is the trusted CLI seam bootstrap verify uses. Capability probe renders the
honest keyless/keyed report. Full reuse of the cycle extractor + extract cores;
26 new tests, neighbors green.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat(hooks): engine-free gbrain hook command, settings writers, transcript parser

Four hook events (session-start digest + crashed-session recovery push,
user-prompt turn-context injection under an 800ms deadline and the 10KB cap,
stop buffers, session-end corpus write with redaction/retention/dedup +
best-effort push); structural JSON settings merger keyed by a _gbrain marker
(foreign hooks and permissions survive); dated host-spec registry; Claude Code
.jsonl parser as a spec-target with a scrubbed 7-shape fixture. Heartbeat is
counters-only by construction. 59 tests; zero engine modules in the import
graph.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* docs(bootstrap): cross-link the full-agent path from the connection docs

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat(bootstrap): dispatcher, verify, status — the command assembled

gbrain bootstrap {status,interview,render,repo,hooks,verify,uninstall,attach}:
engine-free except verify (owns its engine, in-process sweep — no live-serve
conflict); phase list is the TS source of truth with install.jsonl telemetry
and the support blob; verify's fail-soft check suite covers the real write path
(put_page → write-through file → sweep → graph floor → recall), passes keyless,
persists snapshots, and ends with the first-run tour. cli.ts wired per the
three-touchpoint rule; doctor gains the bootstrap check group (silent on
machines with no bootstrap state). 28 new tests; 353 adjacent green.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* docs: KEY_FILES bootstrap cluster + CLAUDE.md dispatcher row (+ build:llms)

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* test(bootstrap): e2e pins — hook-under-live-serve, attach, degraded modes, compiled binary, Docker harness

The permanent pins: a real serve holds the PGLite lock while the engine-free
hook completes (and a direct engine open provably throws LiveServeLockError);
stale-socket fail-open; machine-2 attach with marker-keyed hook repair;
decline-everything installs verify green with every degradation named; the
compiled binary renders bundled templates in an empty cwd. Offline Docker
harness (networkless, read-only) gated into heavy-tests.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(bootstrap): register doctor check categories + system-of-record allow comments

The six bootstrap doctor checks join OPS_CHECK_NAMES; the sweep's batch link/
timeline inserts carry the explicit extract-path allow comments (the sweep IS
the extraction path for workspace pages).

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(test): shard wedge cap tracks suite growth (1500s -> 1800s)

At ~9000 tests a healthy shard finished at 1466s and two progressing shards
were false-killed at the old cap; 1800s restores ~25% headroom over the
slowest observed healthy shard. Real hangs still hit it.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* test(ci): cache-hash policy — README + runbook edits must invalidate [C2]

The old deny-list assertion predates the paste block; README.md and
BOOTSTRAP_FOR_AGENTS.md are policy-doc re-admissions now, so their edits must
change the hash (a paste-block edit shipping under a cached green was the C2
hole).

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(test): classify post-suite exit-hangs as warn-pass; file the leak forensics

A shard killed by the wedge watchdog with every assigned file started and zero
fail markers did all its work and leaked a handle at exit — pre-existing and
master-reproducible (P1 TODO carries the full bisect forensics). Bun's per-test
timeout turns a hung test into a (fail), so the classifier cannot mask one.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(test): shard cap 2400s — the count-balanced heavy shard needs it under contention

Observed: the heavy shard still progressing 22s before an 1800s kill while
siblings finish at 1150-1550s (split balances file count, not weight). Filed
the load-sensitive WAL-repair flake (pre-existing, master's v0.42.75.0 wave).

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* test(bootstrap): quarantine env-mutating suites to the serial lane

check-test-isolation R1: six new files mutate GBRAIN_HOME/env at module scope —
the serial lane (one process per file) is the guard's prescribed home for them.
All 114 tests pass post-rename.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* docs(readme): per-harness install sections — Codex, Claude Code, then OpenClaw/Hermes

Each harness gets its own complete paste-block section (desktop app first,
terminal noted — Claude Code CLI is the identical harness; Codex CLI works
pull-based today); the OpenClaw/Hermes platform path keeps equal weight with
its one-click deploys and INSTALL_FOR_AGENTS block intact; memory-only and
remote-connect tiers consolidated under 'Lighter ways in'. Supersedes the
review's D5 ordering by user direction; stale heading references updated.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* docs(readme): Codex as the recommended first step; OpenClaw/Hermes framed as-intended, high-cost

The install section now routes newcomers explicitly: Codex first
(subscription-priced, nothing to deploy), OpenClaw/Hermes as GBrain used the
way it was designed — always on, at real server + API cost.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix: doc-audit code chasers — broken recovery hints, stale op description, auto_link key

Four small code fixes surfaced by the markdown accuracy audit:
- doctor's auto-RLS recovery hint pointed at `apply-migrations --force-retry 35`,
  which cannot work (--force-retry targets the vX.Y.Z orchestrator registry, not
  the numeric schema MIGRATIONS array). Hint now points at the recreate SQL in
  docs/guides/rls-and-you.md; test pins against regression.
- v0_11_0 migration printed the same broken-mechanism class of hint
  (`config set minion_mode` writes DB config nothing reads); now names
  `apply-migrations --mode` + preferences.json, the real setter.
- submit_job's op description hardcoded a stale handler list; now points at
  registerBuiltinHandlers as the source plus the --follow discovery trick.
- `auto_link` added to KNOWN_CONFIG_KEYS: read by link-extraction, reconcile-links,
  and sweep, and documented as the off-switch in brain-ops/maintain, but the
  allowlist rejected `config set auto_link false`.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* docs: repo-wide accuracy + MECE reform from the 9-bucket markdown audit

A code-grounded audit of every markdown file (root, architecture, guides,
mcp, tutorials, docs-root, operations/eval/designs, skills, recipes) followed
by a fix wave with per-bucket ownership. Four classes of change:

Accuracy — every documented command/flag verified against src/ before writing:
dead commands replaced with working ones (pages purge-deleted, jobs watch
--follow, gbrain restore, import-based Obsidian flow, space-separated --scopes,
real thin-client recipes, working isolation verification, real supervisor
restart procedure, curl-based ngrok health check, real minion_mode setter);
count drift fixed with rot-proof phrasing (100+ ops, 50+ bundled skills via
skills/manifest.json, 140+ engine methods, KNOBS_HASH_VERSION pointer instead
of hardcoded versions); stale claims corrected (search-mode defaults, RETRIEVAL
pipeline order incl. autocut, sentinel rules, refusal-list mechanism, engine
snapshot, shard cap 2400s + EXIT-HANG classifier in TESTING.md, latest-stable +
publish-template documented in RELEASING.md as release.yml promises).

MECE — one home per concept, pointers elsewhere: test isolation → TESTING.md;
OAuth registration + --bind/--public-url lore → DEPLOY.md; mode bundles →
guides/search-modes.md (the home the CLAUDE.md dispatcher always promised);
merge contract → schema-packs.md; WAL ladder → ENGINES.md; quiet-hours →
quiet-hours.md; capture taxonomy → entity-detection.md; person-page taxonomy →
compiled-truth.md; brain-first protocol → brain-first-lookup.md; refresh
semantics → refresh-algorithm.md; KEY_FILES.md deduplicated (58 extension
entries merged, one entry per file); infra-layer.md rewritten as a pointer page.

Privacy — placeholder sweep across guides, docs, skills, and recipes per the
iron rule; per-release narration stripped from reference docs (current-state
prose only).

Bootstrap coverage — AGENTS.md pointer, RESOLVER routing row, INSTALL.md path,
tutorial cross-links, keyless-mode sections in spend-controls/headless-install.

skills.lock.json regenerated; llms.txt/llms-full.txt rebuilt. Gates: verify
36/36, typecheck clean, doctor 96/96, skills-integrity + resolver + build-llms
+ config-set + migrations all green.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* docs(readme): refresh production-brain stats to current brain-repo counts

155,795 pages / 24,589 people / 5,340 companies, counted from the brain
repo's current HEAD; the "100K-page brain" framing moves to 150K to match.
Cron-fleet count unchanged (its store lives on the deployment host, not in
the repos available for verification).

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(scan,push): modern OpenAI/Voyage key patterns, scan staged blobs not disk

- secret-scan matches sk-proj-/sk-svcacct-/sk-None- and pa- Voyage keys
  (the bare sk- pattern missed every current OpenAI key format).
- workspacePush stages first, then scans the staged index blobs via
  git cat-file, closing the scan-then-stage TOCTOU where a file changed
  between snapshot and commit shipped unscanned.
- shared binary-sniff helper, memoized glob regexes, atomic push-status
  write, and tests for pull_conflict + gitignored deny-match paths.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(ci): regenerate flag registry for new commands, harden shard classifier + release token

- cli-flag-registry.generated.ts regenerated: bootstrap/hook/sweep and
  sources push --message/--allow-unverified-remote were missing, so the
  strict #2185 validator rejected real invocations and skipped the new
  commands entirely.
- EXIT-HANG shard classifier now requires every assigned file to have
  started before warn-passing a watchdog kill (was fail-open).
- release.yml passes TEMPLATE_REPO_PAT via http.extraheader, off the argv.
- compiled-binary e2e fails loud in CI instead of a silent permanent skip.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(hook,sweep,ipc): non-blocking hook pushes, bounded sweep + cache, source-bound resolve

- session-start/session-end no longer run synchronous git + inline push
  inside their self-deadline; a detached child does the push and the hook
  returns immediately (blocked Claude Code startup for minutes on a dirty
  tree before).
- serve sweep drops the unbounded listAllPageRefs, resolves only candidate
  targets, claims corpus files atomically (no double-LLM-spend race), and
  caps the fence LIKE scan; heartbeat writes are O_APPEND with rare compaction.
- hot-memory cache evicts expired entries and bounds entry count (the key is
  caller-controlled via _meta.session_id).
- v1 resolve IPC honors boundSourceId like turn_context; turn-context runs
  its arms concurrently. doctor reads push/heartbeat thresholds from hook.ts.
- new tests: doctor bootstrap checks, hook push-gate + deadline, concurrent
  sweep claims, cache eviction, bound-source resolve.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(bootstrap): origin-ownership gate, world visibility, collision-safe source id, consent + templates

- repo adoption requires an exact receipt repo_url match or authed-owner
  check (undefined repo_url was a wildcard); create verifies privacy BEFORE
  the first push.
- verify sets facts.default_visibility=world if unset, so agent-authored
  facts surface in per-turn context (they defaulted private before).
- source_id derives a path-hash suffix when 'workspace' is taken by another
  checkout; every consumer reads manifest.source_id.
- skipped HOOKS_CONSENT now declines (was falling through to default yes);
  --minimal refuses on an initialized manifest; tilde fences escaped.
- MCP registration pins --surface full; status hard-fails a public origin
  (template door); receipt writers guard against newer/corrupt receipts;
  uninstall only claims brain-deleted after a real rm.
- templates ship jobs disabled + provider-consent + support-relay lines;
  soul-audit re-runs over the shared interview bank. TODOS: 11 follow-ups.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(security): close adversarial-review findings — scan fails closed, whole-PEM redaction, bound repo push

Cross-model adversarial pass (Claude + Codex) on the bootstrap wave:

- secret scan fails CLOSED: an unreadable, oversized, or binary staged blob
  now blocks the push (blocked_unscannable, exit 5) instead of committing
  unscanned; only a confirmed staged deletion is skipped. This was the
  headline "block secrets before they leave the machine" property failing open.
- private-key redaction spans the whole PEM block (header+body+footer), not
  just the header line — the base64 body no longer survives into the corpus
  the sweep sends to an extraction provider.
- bootstrap repo commits the workspace (secret-scan-gated) before the first
  push and verifies the remote actually received it, so a push-fail retry
  can't adopt an empty remote as success.
- privacy verify is re-bound to origin immediately before push (a concurrent
  origin rewrite between verify and push is refused).
- session-end corpus write is atomic and clears the stale ingested/in-progress
  sidecars so a resumed session's appended transcript is re-ingested.
- public-origin refusal enforced at render (not only status); MCP "already
  registered" is verified to target this workspace, not blessed blindly;
  verify probe cleanup scopes deletes to its own slugs, not a token substring;
  allowlist fingerprint floor raised 8→16 hex.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* v0.45.0.0 feat(bootstrap): paste-in personal-agent install for Codex + Claude Code

Turns a Codex or Claude Code session into a persistent personal agent:
interview-rendered identity files, a local PGLite brain, per-turn context via
serve IPC (Claude Code hooks / Codex pull protocol), session-triggered
persistence, and a private GitHub repo as the agent's portable body. Keyless-
first (the harness model is the LLM; one optional key adds embeddings +
extraction). New `gbrain bootstrap` command family + `gbrain hook` + `gbrain
sweep`; doctor bootstrap health checks; latest-stable distribution ref +
template-repo publish job. Opt-in, additive — existing installs untouched.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix: regenerate flag registry for security-fix flags; drop fabricated gbrain capabilities doc ref

CI caught two real failures under the merged state:
- the flag registry lagged the blocked_unscannable/exit-5 flags the security
  round added, tripping the #2185 freshness guard.
- headless-install.md described the keyless capability report as a
  `gbrain capabilities` command, which the #3502 doc-command resolver
  rejects — reworded to prose (the real surface is bootstrap verify's report).

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* docs: sync KEY_FILES + bootstrap plan to security-fix behavior

Cross-referenced the security-fix round against the reference docs and
corrected the drift those commits introduced:

- workspace-push.ts entry: stage-FIRST-then-scan order (the TOCTOU fix),
  fail-closed blocked_unscannable, and the sources-push status -> exit-code map.
- hooks.ts entry: MCP registration pins `serve --surface full`.
- hook.ts entry: session-start/session-end pushes run in a detached child
  (non-blocking); atomic corpus write clears stale sidecars.
- bootstrap.ts entry: render hard-refuses a public origin (template door).
- verify.ts entry: source_id collision resolution (workspace-<path-hash>).
- AGENT_BOOTSTRAP_PLAN as-shipped delta note for the scan/stage reorder.

llms bundle unchanged (KEY_FILES is link-only); build:llms and
test/build-llms.test.ts green.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(ci): silence SC2016 on the intentional askpass literal in release.yml

The one-shot GIT_ASKPASS script must contain literal $1 and
$TEMPLATE_REPO_PAT so they expand when /bin/sh runs it at git's credential
prompt, not when the outer shell writes the file — single quotes are correct.
Add a scoped shellcheck disable so actionlint passes.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(skills): declare 'bootstrap my data' trigger in cold-start frontmatter

The doc reform added 'bootstrap my data' to cold-start's RESOLVER.md row (to
disambiguate data-bootstrap from agent-bootstrap) but not to the skill's own
frontmatter triggers, tripping the RESOLVER↔frontmatter round-trip contract
(resolver.test.ts). Declare it; regenerate skills.lock.json.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat(bootstrap): default per-turn hooks + search mode ON without a prompt

Installing gbrain for your coding agent IS the consent for the behaviors that
make it work, so stop re-litigating them with install-time questions whose
"no" defeats the product:

- Per-turn hooks (Claude Code) install ON by default — no prompt. Off-ramps:
  `--no-hooks` at install, `GBRAIN_HOOKS=0` at runtime, `bootstrap uninstall`.
  The "hooks installed" line now surfaces the kill switch so default-on is
  never silent. A persisted HOOKS_CONSENT=no (interview --skip) still declines.
- Search mode defaults to `balanced` silently (nobody knows the modes at
  install; `gbrain search modes` changes it any time).
- MCP scope stays the ONE deliberate prompt — project vs user is a real
  cross-repo privacy choice, not friction.

Marks the two consents `silent: true` in the question bank (new QuestionSpec
field), rewrites the runbook phases so the agent no longer asks them, adds the
`--no-hooks` flag (+ registry regen), and adds default-on / opt-out tests.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* test(bootstrap): real end-to-end coverage — cross-session recall, per-turn content, Codex door, realistic corpus

Closes the seven e2e gaps a coverage audit surfaced: the plumbing was
well-unit-tested but the product claims ("Codex works, context shows up every
turn with real content, it remembers across restarts, machine two recovers,
Postgres works") were unproven end to end. Test-only wave — zero src changes.

- Hermetic synthetic corpus (test/fixtures/bootstrap-corpus/ + a loader helper):
  12 interlinked pages (52 edges, timelines), 12 world/private beliefs, 8 gold
  queries — curated from the gbrain-evals synthetic corpora, 100% placeholder
  names, so recall is asserted on a real multi-entity brain instead of a
  2-node self-planted probe.
- GAP1 magic moment: author a fact via the real write path, disconnect the
  engine, reopen against the same DB, recall it — a real session boundary, not
  verify.ts's same-connection SQL read-back. Plus a source-isolation assertion.
- GAP2 per-turn content: hook-under-serve Pin 1 now seeds a known fact and
  asserts its text lands in the injected block AND private beliefs never do
  (was: empty brain, empty_block accepted as a pass).
- GAP3 Codex door: assert the rendered AGENTS.md carries the Gate-3 brain-first
  pull protocol; make the fake codex shim implement `mcp get` so the [FIX7]
  target-verification can actually fail; the Docker cold-machine harness now
  exercises the hooks/MCP registration step instead of skipping it.
- GAP4 corpus recall: turn-context + verify graph-floor/qrels run on the real
  multi-entity brain with real edges.
- GAP5 attach: machine-two now re-ingests the cloned brain/ into a fresh DB and
  recalls a fact authored only on machine one — the multi-device payoff.
- GAP6 keyed + Postgres (env-gated): real embeddings prove semantic recall a
  paraphrase query can reach but keyless BM25 cannot; bootstrap verify drives a
  real Postgres engine (skipIf DATABASE_URL/keys absent).
- GAP7 persistence: session-end runs the REAL push (not the mocked seam) to a
  local bare remote and the remote receives the content; a planted secret is
  blocked at the gate; the 15-min cron installs and fires a scan-gated push.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* test(bootstrap): real-agent e2e — drive the actual claude + codex binaries end to end

Closes the audit's biggest gap ("no real harness ever drives a turn"). Adapts
gstack's PTY/headless agent harness to prove the bootstrap install + smoke work
against the REAL binaries, not PATH shims. Test/CI/docs only — zero src changes.

- test/helpers/agent-harness.ts: hermetic clean-room child env (ported from
  gstack; drops CONDUCTOR_/CLAUDE_/GSTACK_/MCP_/GBRAIN_, promotes
  GSTACK_ANTHROPIC_API_KEY→ANTHROPIC_API_KEY), real-binary resolvers + auth
  probes, headless `claude -p --output-format stream-json` and `codex exec
  --json` turn runners, a gbrain stdio MCP-config writer, and a keyless brain
  seeder. + a fixture-parse unit test (no binary needed).
- test/e2e/bootstrap-real-claude.serial.test.ts: real `gbrain bootstrap`
  install → REAL `claude mcp add` (verified via `claude mcp get`) → verify
  exit 0 → a real `claude -p --mcp-config --strict-mcp-config` turn that
  invokes mcp__gbrain__search and answers from the brain (proven: toolCalls
  include mcp__gbrain__search, final text carries the seeded fact).
- test/e2e/bootstrap-real-codex.serial.test.ts: same install with REAL `codex
  mcp add` into a real ~/.codex/config.toml + Gate-3 pull-protocol assertion,
  then a real `codex exec --json` turn surfacing the fact (MCP or the pull-
  protocol shell path). Bounded retry absorbs codex's occasional MCP-call
  cancellation without softening the fact-requiring assertion.
- Everything hermetic (temp HOME/CLAUDE_CONFIG_DIR/CODEX_HOME/GBRAIN_HOME;
  real ~/.codex auth copied read-only) and skipIf-gated so it self-skips
  cleanly where the binaries/auth are absent.
- heavy-tests.yml: gated `real-agent-e2e` job (nightly/label, never the PR
  shard; no-op on a runner without authed binaries).
- TODOS: compiled `gbrain` binary can't serve a PGLite brain (bun compile
  omits the WASM/extension payloads); harness falls back to `bun run` serve.

Verified against live claude 4.6 + codex 0.147.0: 15 pass / 0 fail; verify
36/36; typecheck clean.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(ci): real-agent-e2e job — bash array + --timeout (actionlint SC2086 + bun-test-timeout guard)

The real-agent-e2e job's file loop used an unquoted $FILES (SC2086) and ran
`bun test` without --timeout (check-bun-test-timeout guard). Switch to a bash
array and add --timeout=600000 (real-agent turns are slow; the tests self-skip
without authed binaries so it's a no-op elsewhere).

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(pglite): embed WASM + extension assets so the compiled binary can serve

A `bun build --compile` gbrain binary could not `serve` a PGLite brain: the
compile bundles JS but not PGLite's runtime payload (pglite.wasm, initdb.wasm,
pglite.data, vector/pg_trgm tarballs), so `serve` on PGLite died with a
bunfs/ENOENT. Now the assets ride inside the binary.

- src/core/pglite-embedded-assets.ts: embeds the five assets via
  `import … with { type: 'file' }` (the ENG-6 idiom) and exposes
  getEmbeddedPgliteOptions() → { pgliteWasmModule, initdbWasmModule, fsBundle,
  extensions:{vector,pg_trgm} }. WASM/fsBundle are consumed as bytes; the two
  extension tarballs are materialized to a content-addressed temp file (atomic,
  size-verified reuse) because PGLite reads them via fs.createReadStream, which
  cannot read a /$bunfs path. Unconditional (works in bun-run and compiled),
  so no fragile mode branch.
- src/core/pglite-engine.ts: static-import getEmbeddedPgliteOptions (engine
  path stays static per the engine-dynamic-import invariant); spread into both
  PGlite.create sites (initial + WAL-repair retry). The bunfs classifier stays
  as a backstop but no longer fires for a correct binary.
- scripts/check-pglite-embedded.sh (+ smoketest): compiles a focused binary and
  asserts it boots PGLite, CREATE EXTENSION vector/pg_trgm, and round-trips a
  page — wired into `bun run verify` (now 37 checks), check:all, and
  check:pglite-embedded. Fail-soft only when compile is unavailable.
- agent-harness.ts probeCompiledPglite now passes → the real-agent e2e uses the
  fast compiled MCP server. TODOS: the P2 "can't serve PGLite" item is closed.

Verified: fresh compiled binary ran `search`/`query` against a PGLite brain and
returned the seeded row (no bunfs/ENOENT); verify 37/37; pglite-engine 120/0
source-mode; typecheck clean; engine-dynamic-import + parity guards pass.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

---------

Co-authored-by: Claude Fable 5 <noreply@anthropic.com>
v0.45.0.0
2026-08-11 16:42:11 -07:00
fc310db3ea v0.44.1.0 feat(ai): recipes resolve any model — remove the native-recipe runtime allowlist (#4014)
* feat(ai): recipes resolve any model — remove the native-recipe runtime allowlist

Frontier models ship weekly; a curated models: array can never stay current.
assertTouchpoint now checks only the provider's touchpoint capability (anthropic
has no embeddings, voyage has no chat) and never gates on the model id. Any id
the user names goes to the provider, which is the real authority on what
exists — a nonexistent model surfaces as the provider's own model_not_found at
call time, and gbrain models doctor live-probes the configured models for a
pre-flight check.

With the gate gone, the entire extendedModels bypass machinery is dead and
deleted: the _extendedModels registry, registerExtendedModel,
registerConfigSelectedChatModel (+ its one caller in the contextual-reindex
handler), both registration loops, and the tier-resolution loop that existed
only to feed them. This also structurally closes the per-task-key gap where
models.think / models.dream.* / facts.extraction_model selections were rejected
while identical models.default selections worked.

Recipe models: arrays remain informational — models[0] default selection for
--model <provider> shorthand, guard-test fixtures pinning the repo's own
hardcoded defaults, and gbrain providers list display. gateway.rerank() keeps
its own model-list check deliberately: each listed reranker id maps to a known
request/response wire shape.

unknown_model still fires for providers lacking the touchpoint, so every probe
reason stays reachable; tests that pinned the allowlist rejection now pin the
pass-through contract (or the missing-touchpoint trigger).

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* v0.44.1.0 feat(ai): recipes resolve any model — remove the native-recipe runtime allowlist

Frontier models ship weekly; a curated models: array can never stay current.
assertTouchpoint now checks only the provider's touchpoint capability and never
gates on the model id — any id the user names goes to the provider, and a
nonexistent one surfaces as the provider's own model_not_found at call time
(gbrain models doctor stays the token-free pre-flight).

The extendedModels bypass machinery is deleted end to end, which also closes
the per-task-key gap: models.think / models.dream.* / facts.extraction_model
selections now behave exactly like models.default. think's graceful sentinel
surfaces the thrown AIConfigError's own message + fix instead of generic key
advice, so a provider 4xx is never key-blamed. gateway.rerank() keeps its own
model-list check (each listed id maps to a known wire shape).

Ship chores: VERSION/package.json → 0.44.1.0, CHANGELOG entry, gitleaks action
pin refreshed to current v2.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

---------

Co-authored-by: Garry Tan <garrytan@gmail.com>
Co-authored-by: Claude Fable 5 <noreply@anthropic.com>
v0.44.1.0
2026-08-11 12:41:24 -07:00
Masa 52306ed438 fix(auth): accept comma-separated --scopes and reject zero-token input (#3990)
`gbrain auth register-client --scopes` only split on whitespace, so the
comma-joined form the CLI's own registration hint recommends
(`--scopes read,write,admin`, printed by init.ts) fell through as a
single unrecognized token and was rejected with `Unknown scope
"read,write,admin"` -- self-contradicting the hint.

parseRegisterClientArgs now normalizes comma- and/or whitespace-separated
--scopes input to the canonical space-joined form before it reaches
registerClientManual's assertAllowedScopes gate. The shared
parseScopeString (RFC 6749 space-delimited OAuth wire format, also used
for untrusted DCR/refresh/request-scope parsing) is left untouched.

Input that normalizes to zero tokens (comma-only, whitespace-only, or
empty) is rejected at the parser boundary with a clear usage error,
rather than silently registering a client with no usable scopes --
closing a hole that a comma-only first pass at this fix left open
(caught by review).

Tests cover comma/space/mixed forms parsing to the identical scope set,
a genuinely unknown scope still being rejected, and zero-token input
being rejected.
2026-08-11 04:48:11 -07:00
Masa a2521d0a32 fix(enrich): keep entity-name candidates on a single line (#3991)
* fix(enrich): keep entity-name candidates on a single line

extractEntities()'s namePattern used \s+ between capitalized words,
which matches across line breaks. A capitalized word ending one
paragraph and a capitalized word starting the next were spliced into
one bogus multi-word candidate whose name embedded the line break(s).

Scope the pattern to same-line whitespace: [^\S\r\n  ]+
(spaces, tabs, NBSP, other Unicode space separators, but not \n, \r,
or the Unicode line/paragraph separators U+2028/U+2029). Same-line
multi-word names and NBSP-separated names still match; any line break
between two capitalized words now stops the match, same as it already
does for punctuation.

Surfaced during single-user dogfooding on a ~100-page install
(v0.44.0.0): extractEntities produced ~1,620 raw candidates, and these
paragraph-spanning splices were the largest single source of noise.

* fix(enrich): exclude vertical tab and form feed from name-splice guard

The line-scoping fix in the prior commit excluded CR, LF, and the
Unicode line/paragraph separators (U+2028/U+2029) from the same-line
whitespace class, but still treated VT (U+000B) and FF (U+000C) as
same-line whitespace since \s matches them and they weren't in the
excluded set. Winters<VT>Reyes and Winters<FF>Reyes were still spliced
into one bogus candidate, contradicting the "any line break stops the
match" intent.

Add \v and \f to the excluded set, so the pattern now excludes every
vertical whitespace code point (CR, LF, VT, FF, U+2028, U+2029) while
still retaining horizontal whitespace (spaces, tabs, NBSP, other
Unicode space separators) between same-line words.
2026-08-11 04:24:00 -07:00
Garry Tan 75fae742d5 v0.44.0.0 feat(eval): BrainBench — cross-harness memory conformance suite (Cathedral 2) (#2158)
Public, reproducible, cross-harness benchmark for the four ways agent memory fails (know-to-ask, push precision/recall, write-back fidelity, cross-session continuity). Hermetic PGLite, sealed gold, deterministic corpus, CI gate vs master's committed baseline, published JSON-schema foreign-runner contract. See docs/eval/BRAINBENCH.md.
v0.44.0.0
2026-08-10 09:44:46 -07:00
MasaandClaude Opus 5 a13ecb1f0a fix(cycle): BudgetMeter prices from the derived Anthropic view, so the cap is off for canonically-priced models (#3951)
* fix(cycle): price BudgetMeter through the canonical table, not the derived Anthropic view

BudgetMeter estimated submit cost with `estimateMaxCostUsd`, which reads
ANTHROPIC_PRICING. CLAUDE.md defines that table as a DERIVED view of the one
canonical chat-pricing table, so any non-Anthropic model was unpriceable here
even when CANONICAL_PRICING carries its rates — and an unpriceable model does
not merely lose accuracy, it takes the `cost === null` branch and returns
`allowed: true` with cost 0. The cap is off for that model.

Measured on 130d321d: openai:gpt-5.2 and deepseek:deepseek-chat are both in
CANONICAL_PRICING and both absent from the derived view, so the gate was
disabled for them. claude-opus-4-7 resolves through either.

The estimate now goes through canonicalLookup, falling back to the existing
call for anything canonical does not carry. Anthropic numbers are unchanged
by construction — the derived view is generated from canonical — and a test
pins that parity.

Deliberately NOT changed: a model absent from canonical too keeps the
documented warn-and-allow bypass, with the same BUDGET_METER_NO_PRICING
warning, the same submit_unpriced ledger event, and the same
`unpricedSubmits` counter. Whether those should be priced at a conservative
fallback rate instead — as synthesize-concepts (#3915) and skillopt/preflight
already do — is a policy call, not this fix. The ledger schema is untouched;
`test/fixtures/dream-budget-schema-v1.jsonl` still describes it.

Related to #2149 (self-closed by its reporter without a fix; the pricing half
of what it described is still live). Distinct from #2504, which is the
opposite failure mode in BudgetTracker: hard-throw on a missing entry rather
than silent bypass.

Verification on 130d321d (v0.42.76.0):
- bun test budget-meter + auto-think-phase + propose-takes + model-pricing -> 93 pass / 0 fail
- red check: with upstream/master's budget-meter.ts -> 10 pass / 1 fail on the new gating test
- bun run typecheck -> clean
- bun run verify -> 34/34 green

Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>

* fix(cycle): guard the non-finite estimate, and correct the docs the change makes stale

Codex review, both verified before applying:

- Both pricing tables are object literals, so a model id colliding with an
  inherited key ('constructor', 'toString', '__proto__') resolves to a truthy
  Object.prototype value whose .input/.output are undefined and the rate
  arithmetic yields NaN. Measured: canonicalLookup('constructor') returns a
  function, and estimateMaxCostUsd('constructor', …) already returns NaN on
  master, so the shape predates this change — but it sits on the path this
  patch touches. `cumulative + NaN` is NaN and `NaN > budget` is false, so one
  such submit would disable the gate for the rest of the cycle. The estimate
  helper now treats a non-finite result as unpriceable, which routes that one
  submit into the documented warn-and-allow branch and leaves the running
  total finite. Regression test submits the poison id, then a submit that must
  be denied. The same shape on the estimateMaxCostUsd path is left alone.

- Two docs asserted the old behaviour and are now current-state: the
  anthropic-pricing.ts header ("non-Anthropic models … bypass … runs
  unbounded") and the KEY_FILES.md entry for the same file. Both now say the
  bypass applies only when canonical has no rates either. `bun run
  build:llms` regenerated; the bundles are unchanged because KEY_FILES.md is
  linked rather than inlined, and test/build-llms.test.ts passes.

Verification on 130d321d (v0.42.76.0):
- bun test budget-meter + auto-think-phase + propose-takes + model-pricing + build-llms -> 106 pass / 0 fail
- bun run typecheck -> clean
- bun run verify -> 34/34 green

Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 5 <noreply@anthropic.com>
2026-08-10 21:32:46 +07:00
MasaandClaude Opus 5 e2ff128e35 fix(config): register sources.default as a known key + validate it at set time (#3941)
* fix(config): register sources.default as a known key + validate it at set time

`gbrain config set sources.default <id>` printed

    WARN: writing unknown key "sources.default" with --force.
    Nothing in gbrain reads this.

That last sentence is false. `source-resolver.ts` tier 5 reads
`getConfig('sources.default')` on every unqualified call, and
`gbrain sources default <id>` writes exactly this key. The key was
simply missing from KNOWN_CONFIG_KEYS.

The message matters more than the missing entry: pinning
`sources.default` is the documented way to stop tier 5.5
(sole-non-default-source auto-routing) from silently moving where
unqualified writes land. An operator who hits that and reaches for
this knob is told the knob does nothing.

- Register the exact key, not a `sources.` prefix. A prefix would
  bless arbitrary unread `sources.*` keys and weaken the unknown-key
  guard this list exists to provide.
- Validate at set time, mirroring `runDefault()`: reject a malformed
  id, and reject one that is not registered. Without this, registering
  the key would turn `config set` into a way around the check
  `sources default` already performs — and tier 5 calls
  assertSourceExists, so a typo would surface later as a throw on
  unrelated commands rather than at the point of the mistake.

Tests: membership, the absence of a blanket `sources.` prefix, and the
three set-time paths (malformed / unregistered / accepted).

* fix(config): keep flag literals out of the new error text + refresh flag registry

CI caught this: the #2185 freshness guard failed because the generated
flag registry no longer matched a fresh generator run.

Two separate causes, only one of them mine:

1. Mine. The "source is not registered" message named `--path` while
   suggesting `gbrain sources add`. The generator scans command sources
   for flag tokens, so a flag named in prose silently gets granted to
   `gbrain config` — exactly the prose-bleed class #3902 closed for
   safety flags. Reworded to carry no flag literals. (The first attempt
   at a warning comment reproduced the bug by quoting a placeholder
   flag in the comment itself; that is gone too.)

2. Pre-existing. Regenerating also adds `--federated-read`, which comes
   from `src/commands/auth.ts` and appears in no line this branch
   touches. The committed registry on master is stale with respect to
   its own sources, so the guard fails for any branch cut from master
   until it is refreshed. Committed here because the guard's contract is
   "committed registry == fresh generator run"; flagged in the PR body
   so it is not mistaken for part of this change.

`bun test test/cli-flag-validation.test.ts` — 24 pass / 0 fail.

* fix(config): propagate lookup failures, describe the real id grammar

Round-2 review findings:

- Dropped `.catch(() => null)` around `fetchSource`. It turned a
  connection failure / permission error / SQL regression into
  "source is not registered", sending the operator after a
  registration problem that doesn't exist while the real fault was
  swallowed. `fetchSource` already absorbs the one expected
  legacy-column case; everything else should surface as itself.
  Test added: `executeRaw` throws → the error propagates and nothing
  is written.
- The malformed-id message quoted `[a-z0-9-]{1,32}`, which is looser
  than `SOURCE_ID_RE` (`-wiki` reads as legal under the printed rule
  but is rejected). Now states the actual grammar.
- Tightened the accept-path assertion from `toContainEqual` to an
  exact `setCalls` equality.

Also corrects the previous commit's explanation of the flag-registry
drift: `--federated-read` is NOT pre-existing master drift. It enters
`config`'s flag set because this change adds
`await import('../core/source-id.ts')`, and that module's comment
mentions the flag — the generator follows imports, so prose-bleed
crosses module boundaries. Master is not stale; this branch pulled it
in. The regenerated entry is deterministic and harmless (`config` is
flag-validation-exempt), and stays in this PR because the guard's
contract is "committed registry == fresh generator run".

---------

Co-authored-by: Claude Opus 5 <noreply@anthropic.com>
2026-08-10 21:16:19 +07:00
MasaandClaude Opus 5 69472c24e7 fix(jobs): embed --dry-run --background embedded for real (#3594 class) (#3956)
* fix(jobs): embed --dry-run --background embedded for real

`runEmbed` serializes the flag into the job payload
(`dryRun: cleanArgs.includes('--dry-run')`), but the registered `embed` worker
handler never read it back — it forwards slug/slugs/all/stale/sourceId/pace and
onProgress, and nothing else. So `runEmbedCore` ran without `dryRun`: a
backgrounded preview called the embedding provider and wrote vectors. API spend
and NULL->vector mutation from an invocation whose entire purpose was neither.

One line: the handler now passes `dryRun: !!job.data.dryRun`.

Fourth instance of the class in #3594, which lists three (jobs prune, unify-types,
sync) and says "filing the class, because fixing them one at a time will not stop
the fourth". The shape here is a fourth variant: the guard is neither late nor
defaulted wrong — it simply is not wired to the flag the CLI already sends.

The test mirrors test/jobs-unify-types-default-dryrun.test.ts (the #1575 fix in
that same issue) and asserts the side effect rather than the return value, which
is #3594's stated reason this class escapes tests. It seeds real stale chunks
first and asserts countStaleChunks > 0, so the dry-run path cannot short-circuit
and pass the write assertion vacuously.

Two independent signals, so it bites in either environment. Without embedding
credentials a real run throws EmbeddingCredentialError from the preflight, so
reaching the assertion at all proves the dry-run branch was taken — a preview
has no business needing an API key. With credentials the run would succeed and
write, and the chunk count catches it.

Verification on 130d321d (v0.42.76.0):
- bun test jobs-embed-background-dryrun + jobs-unify-types-default-dryrun + jobs-nice-flag -> 7 pass / 0 fail
- red check: with upstream/master's jobs.ts -> 0 pass / 1 fail
- bun run typecheck -> clean
- bun run verify -> 34/34 green

Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>

* fix(jobs): report what the embed job did, and make the guard hermetic

Codex, both verified:

- The handler returned a constant `{ embedded: true }`, so after the dryRun
  fix a dry run reported that it embedded — the same lie in miniature, visible
  through `gbrain jobs get`. It now returns the real counts. `embedded` keeps
  its key and stays truthy on a real run (it is the count now, 0 on a dry run).

- The guard was only sound where no embedding provider is configured:
  runEmbedCore catches provider failures into `failures` and writes nothing, so
  an unfixed handler pointed at a broken provider would also leave the write
  count unchanged and pass. A mocked transport with a call counter closes that
  window — a real run must reach embedBatch, a dry run must not.

Verification on 130d321d: typecheck clean, verify 34/34, focused jobs+embed
tests 36 pass / 0 fail, and still 0 pass / 1 fail against upstream/master's
jobs.ts.

Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>

* test(jobs): rename to *.serial.test.ts — mock.module needs it

check:test-isolation rule R2: mock.module() leaks across files inside a shard
process, so a file using it must be serial. The hermetic embed transport added
in the previous commit introduced one; embed.serial.test.ts is serial for the
same reason.

Caught by `bun run verify`, which I ran after pushing rather than before —
same sequencing mistake as earlier on this branch. Gates now, all green:
typecheck clean, verify 34/34, guard 1 pass / 0 fail, and 0 pass / 1 fail
against upstream/master's jobs.ts.

Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 5 <noreply@anthropic.com>
2026-08-10 20:59:53 +07:00
MasaandClaude Opus 5 ea17f5911c fix(cli): --help required a configured brain for five self-help commands (#3954)
* fix(cli): --help required a configured brain for five commands

`gbrain models --help` on a machine that has not run `gbrain init` exits 1
with "No brain configured. Run: gbrain init". So do watch, skillopt, maintain
and extract-conversation-facts. That is the state a reader is most likely to
be in when they reach for --help.

Mechanism: cli.ts's per-command --help block prints the generic usage stub
only for CLI_ONLY commands NOT in CLI_ONLY_SELF_HELP. Members of that set are
meant to print their own help, so they fall through to the normal dispatch --
which connects the engine before the handler runs. Each of these five already
opens with a --help branch (models honours it first by explicit comment,
watch and skillopt on line 1 of the handler); the connect gate made that
branch unreachable.

Dispatched pre-connect now, through a small table keyed by command. The engine
is never read on the help path, so a placeholder is passed rather than
widening five signatures -- skillopt already declares `BrainEngine | null` for
this reason.

Measured on 130d321d with an empty GBRAIN_HOME:

  before: models/watch/skillopt/maintain/extract-conversation-facts -> exit 1, 0 lines
  after:  exit 0, 15 / 21 / 94 / 11 / 43 lines of their own help

Seven other members of the set (brainstorm, config, embed, lsd, migrate,
pages, retrieval-upgrade) still need a brain, because their handlers have no
--help branch to reach. Fixing those means either writing help or dropping
them from CLI_ONLY_SELF_HELP so the generic stub answers -- a call for the
maintainer, not something to guess at here. They are pinned in the test as a
tripwire rather than omitted, so the coverage list cannot drift in either
direction: fixing one fails the test until its entry moves.

The guard runs the CLI with an empty GBRAIN_HOME and asserts exit 0 plus real
help output. Behaviour, not a declaration -- membership in CLI_ONLY_SELF_HELP
was itself unverified, which is how five commands sat in a set whose whole
meaning is "prints its own help" while printing none.

Verification on 130d321d (v0.42.76.0):
- bun test cli + cli-flag-validation + cli-help-without-brain -> 54 pass / 0 fail
- red check: with upstream/master's cli.ts -> 5 fail / 1 pass
- bun run typecheck -> clean
- bun run verify -> 34/34 green
- bun run build:flag-registry -> no diff

Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>

* test(cli): stop the no-brain guard inheriting a database URL

Codex: an empty GBRAIN_HOME is not sufficient. loadConfig also honours
GBRAIN_DATABASE_URL and DATABASE_URL (config.ts:550-551), so a developer or CI
runner exporting either would let the CLI connect, the positive assertions
would pass on master, and the guard would be inert.

Both are now unset for the spawned process. Verified the guard still regresses
under the leak it was vulnerable to: with DATABASE_URL exported and
upstream/master's cli.ts, the run is 5 fail / 1 pass.

Verification on 130d321d: 6 pass / 0 fail, typecheck clean, verify 34/34.

Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>

* fix(test): type the spawn env so the delete compiles

process.env is narrowly typed here, so deleting GBRAIN_DATABASE_URL /
DATABASE_URL off a spread of it fails tsc with TS2339. Declared as
Record<string, string | undefined>.

My previous commit was pushed with this error present — typecheck and verify
were run after the push, not before. Verified now:
- bun run typecheck -> clean
- bun run verify -> 34/34 green
- bun test cli + cli-flag-validation + cli-help-without-brain -> 54 pass / 0 fail

Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>

* test(cli): spawn with --no-env-file so a local .env cannot re-inject the URL

Codex: unsetting GBRAIN_DATABASE_URL / DATABASE_URL on the spawn env is not
enough, because bun auto-loads .env from cwd and GBRAIN_DATABASE_URL is
honored unconditionally (config.ts:550). A developer's local .env would put
back exactly what the deletes removed, and the guard would go inert. Flag
semantics confirmed from `bun --help`: '--no-env-file  Disable automatic
loading of .env files'.

Verified: typecheck clean, verify 34/34, guard 6 pass / 0 fail, and still
5 fail / 1 pass against upstream/master's cli.ts.

Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>

* test(cli): run the tripwire spawns concurrently

Seven sequential CLI spawns were most of this file's wall clock and each is
independent (own temp GBRAIN_HOME). 4.05s -> 2.87s locally; the saving is
larger on a loaded CI runner.

Gates run BEFORE this push, unlike twice earlier on this branch: typecheck
clean, verify 34/34, 6 pass / 0 fail, and still 5 fail / 1 pass against
upstream/master's cli.ts.

Note on the shard 9 failure on the previous run: it exited 123 with no
reported test failure, the last output being an unrelated capture test hitting
a placeholder API key. Shard 9 passes locally with this change, and passes on
three sibling PRs off the same base, so I have not been able to attribute it.
Pushing this change re-runs it; if it reproduces in the same place the cause is
here and I will chase it rather than re-run again.

Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>

* test(cli): make the guard serial so it does not re-shard the suite

Root cause of the shard 9 failure on the two previous runs, chased rather than
re-run as promised.

scripts/run-unit-shard.sh documents 'hash-disjoint' sharding but assigns by
sorted-index modulo: `i % shard_m + 1`. Adding ONE test file shifts every
index after it, so 933 of 1103 files change shard. Shard 9 kept
capture-runcapture.test.ts but got a different set of neighbours, and that file
does a real embed attempt — under CI's placeholder OPENAI_API_KEY it reached
the network, failed, and took the shard process down with exit 123 and no
reported test failure.

Not my code's behaviour: capture-runcapture passes in isolation with my cli.ts
AND with master's (26 pass each), and shard 9 passed on four sibling PRs off
the same base that add no test file. Any PR adding a sharded test file can
surface this.

Serial files are excluded from the partition (`-not -name '*.serial.test.ts'`),
so the sharded set is back to master's 1103 files and shard 9 to its original
composition. Serial is also the honest classification: this guard spawns twelve
CLI subprocesses.

Gates before push: typecheck clean, verify 34/34, 6 pass / 0 fail, still
5 fail / 1 pass against upstream/master's cli.ts.

Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 5 <noreply@anthropic.com>
2026-08-10 20:44:52 +07:00
MasaandClaude Opus 5 d050969da6 fix(frontmatter): drop five Apple Notes directory rules that cannot change an outcome (#3952)
* fix(frontmatter): drop five Apple Notes rules that cannot change an outcome

DIRECTORY_RULES carried five subfolder rules whose every field equals what
the generic 'apple notes/' rule already produces. The generic rule assigns
type/source/date/title and tags the first path segment lowercased and
hyphenated, which is exactly what these five spelled out by hand. They read
as deliberate overrides and are not.

Measured across prefix x body x filename (45 cases): title, type, date,
source and tags are identical with and without them. The only field that
moves is `matchedRule`, the debug label naming which rule fired -- and it
must move, because the rule that fires is now the generic one. Nothing
persists that field: serializeFrontmatter writes title/type/date/source/tags
only, and the one behavioural consumer (frontmatter.ts:475) compares it
against the literal '(default)', which neither value is.

Removing them exposed an existing assertion as vacuous: the ordering test
named 'apple notes/yc/' and asserted its index is below the generic rule's.
findIndex returns -1 for an absent prefix, and -1 is below any index, so the
test kept passing while testing nothing. Rewritten to require every subfolder
rule to precede the generic one, and to require that the set is non-empty.

Adds a guard that recomputes the equivalence rather than listing prefixes, so
a rule that re-derives the generic output cannot be added back silently.

Verification on 130d321d (v0.42.76.0):
- bun test frontmatter-inference + page-type-exhaustive -> 43 pass / 0 fail
- red check: with upstream/master's frontmatter-inference.ts -> 38 pass / 1 fail
- bun run typecheck -> clean
- bun run verify -> 34/34 green
- grep for each removed prefix across the tree -> 0 remaining references

Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>

* fix(frontmatter): mirror production normalization in the redundancy guard

Codex review, both gaps verified against the implementation before fixing:

- inferFrontmatter lowercases BOTH sides before `startsWith`
  (frontmatter-inference.ts:297), so a rule authored as 'Apple Notes/YC/'
  matches at runtime. The guard compared prefixes case-sensitively and
  skipped it.
- The generic rule tags parts[1] only (frontmatter-inference.ts:332), so a
  nested rule 'apple notes/yc/archive/' carrying tags ['yc'] is equally
  redundant. The guard derived from the whole remainder ('yc/archive') and
  did not match.

The predicate now lowercases the prefix and derives from the first segment,
and it is extracted so the guard can be pointed at synthetic rules. A second
test does exactly that: both missed spellings must be flagged, and three
genuine overrides (different tag set, differing field, non-Apple prefix) must
not be. A guard that never fires is indistinguishable from a guard that
cannot fire; this makes the difference observable.

Verification on 130d321d (v0.42.76.0):
- bun test test/frontmatter-inference.test.ts -> 40 pass / 0 fail
- red check: with upstream/master's frontmatter-inference.ts -> 39 pass / 1 fail
- bun run typecheck -> clean
- bun run verify -> 34/34 green

Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>

* fix(frontmatter): normalize the optional strategy fields in the guard

Codex round 3, verified: inferFrontmatter defaults datePattern and
titleStrategy to 'filename' (frontmatter-inference.ts:310, :317), so an
omitted field and an explicit 'filename' describe the same rule. The guard
compared them literally, which meant a redundant rule could escape detection
by simply leaving them out.

Both sides are now normalized through the same default, and the guard's own
self-test covers the escape: the same redundant rule with those two keys
deleted must still be flagged.

Verification on 130d321d (v0.42.76.0):
- bun test test/frontmatter-inference.test.ts -> 40 pass / 0 fail
- bun run typecheck -> clean
- bun run verify -> 34/34 green

Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>

* test(frontmatter): pin the accepted matchedRule change instead of leaving it incidental

Codex: matchedRule surfaces as results[].rule in `gbrain frontmatter`
(frontmatter.ts:486), so deleting a rule is a consumed-output change even
though nothing persists the field. Asserted rather than merely described:
a path under a removed prefix now reports 'apple notes/', every field
serializeFrontmatter writes is unchanged, and the value is still not the
literal '(default)' that frontmatter.ts's catch-all skip keys on.

Verification on 130d321d: 41 pass / 0 fail, typecheck clean, verify 34/34.

Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 5 <noreply@anthropic.com>
2026-08-10 20:15:02 +07:00
MasaandClaude Opus 5 7c65bcee9b fix(embed): dry-run announced one page of progress for any stale count (#3955)
`gbrain embed --stale --dry-run` emitted a synthetic `onProgress(1, 1, 0)`.
The CLI latches its `embed.pages` total from the first callback, so the
progress stream announced a single page next to a summary naming every stale
chunk:

  {"event":"start","phase":"embed.pages","total":1}
  {"event":"tick","phase":"embed.pages","done":1,"total":1,"pct":100}
  [dry-run] Would embed 60 stale chunks

Measured on a fresh PGLite brain with 60 unembedded pages, v0.42.76.0.

docs/progress-events.md defines `total` as "the total item count if known at
start" and says it is omitted when the work has no total up front. Omission is
provided for; asserting a wrong value is not. The number is also internally
inconsistent with this same path's own result: the existing test asserts
`pages_processed === 0` for a dry run, with the comment "we don't enumerate
pages in dry-run (cheaper pre-flight)".

The synthetic call is dropped, so a dry run emits no `embed.pages` phase --
matching the zero pages it processes. No consumer requires the phase to appear:
progress-tail.ts names it only as an example, and the minion path
(jobs.ts:1553) passes its own callback from the real embed loop.

Adjacent but distinct from #1459, which is about the denominator of a REAL
`--stale` run being latched from the first callback while pages keep arriving
(numerator exceeds it). Same phase, different cause; this change does not
address that one.

Verification on 130d321d (v0.42.76.0):
- bun test test/embed.serial.test.ts -> 35 pass / 0 fail
- red check: with upstream/master's embed.ts -> 34 pass / 1 fail
- live: `embed --stale --dry-run --progress-json` on the 60-page brain now
  prints the summary only, no embed.pages events
- bun run typecheck -> clean
- bun run verify -> 34/34 green

Co-authored-by: Claude Opus 5 <noreply@anthropic.com>
2026-08-10 19:47:07 +07:00
MasaandClaude Opus 5 9afbf4a09a docs(search): telemetry comments promised an exit flush the code deliberately removed (#3950)
* docs(search): telemetry header still promised an exit flush that was removed

The module header for the search-telemetry rollup writer describes the
buffer as "flushed periodically (60s OR 100 calls, whichever first) AND on
process exit via beforeExit/SIGINT/SIGTERM with a 2-second timeout cap."

`ensureExitHook` two hundred lines below says the opposite, and is the
current behaviour: "Lossy by design: skip the buffered drain entirely on
process exit", with the signal handlers dropped too. The beforeExit drain
was removed because it kept short-lived CLI processes alive waiting on a DB
write, which hung test/e2e/claw-test.test.ts.

So the file has documented an exit flush it does not perform. A reader who
stops at the header concludes every recorded search reaches search_telemetry.

The header now states current behaviour and names the consequence, pointing
at the existing ensureExitHook rationale rather than restating it. Comment
only; no code path changes.

Verification on 130d321d (v0.42.76.0):
- bun test test/search-telemetry.test.ts -> 16 pass / 0 fail
- bun run typecheck -> clean
- bun run verify -> 34/34 green

Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>

* docs(search): sweep the rest of the file's exit-hook claims

Codex review: correcting only the module header left three more comments in
the same file describing hooks that ensureExitHook does not install, and
stated the loss window too narrowly.

- header: loss is not "fewer than 100 buffered calls". flush() clears
  `buckets` before awaiting the write, so a snapshot handed to an in-flight
  flush is lost too, and coalesced flushes let the buffer exceed the
  threshold. Stated as: anything not yet committed is lost on exit.
- line ~26 attributed the downside to a "hard crash" and pointed at the
  methodology doc. Checked: docs/eval/SEARCH_MODE_METHODOLOGY.md contains no
  such explanation, and with no exit drain an ordinary exit loses data too.
- the TelemetryWriter docblock said the timer "and exit hooks" install
  lazily.
- stop() said it uninstalls exit hooks; it clears the timer and the buffer.

Still comment-only.

Verification on 130d321d (v0.42.76.0):
- bun test search-telemetry + search-telemetry-cache-wiring.serial -> 20 pass / 0 fail
- bun run typecheck -> clean
- bun run verify -> 34/34 green
- grep for 'uninstall' and 'exit hook' in the file -> only the one line that
  now states none are installed

Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>

* docs(search): qualify the threshold trigger and the test-only helpers

Codex round 3, both verified against the code before applying:

- `flush()` returns the in-flight promise at its first line, before the
  bucket swap, so a record that crosses FLUSH_THRESHOLD_CALLS while a write
  is running coalesces onto it and never drains the new bucket. "100 calls,
  whichever first" read as a guarantee; it is a trigger. The flush docstring
  now says the coalesced caller does not get its own drain, and notes that
  the pre-write swap is why an uncommitted snapshot cannot be recovered.
- `stop()` said "Called from tests / shutdown". Its only caller in src/ and
  test/ is `_resetTelemetryWriterForTest`; nothing shuts the writer down in
  production.
- `flushOnExitForTest()` said it was "retained as a no-op"; it calls
  `flush()`. It is also unreferenced — the only occurrence in the tree is
  its own definition. Comment corrected; left in place rather than deleted,
  since removing an exported test helper is beyond a comment fix.

Verification on 130d321d (v0.42.76.0):
- bun test search-telemetry + search-telemetry-cache-wiring.serial -> 20 pass / 0 fail
- bun run typecheck -> clean
- bun run verify -> 34/34 green

Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>

* docs(search): the flush timer installs on setEngine, not on the first record

Codex round 4, verified: ensureTimer() has exactly one call site and it is
inside setEngine(). A caller can wire an engine without ever recording, as
the telemetry tests do, so attributing installation to the first record()
was wrong.

Verification on 130d321d: typecheck clean, verify 34/34, telemetry tests
20 pass / 0 fail.

Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 5 <noreply@anthropic.com>
2026-08-10 19:30:43 +07:00