Files
gbrain/docs/TESTING.md
Garry TanandClaude Fable 5 99dd1a083c v0.45.5.0 feat(autopilot): brain currency — honest daemon health, migrate quiesce fence, keyless scheduler chain (#4030)
* docs(designs): agent-bootstrap plan + design docs (normative, review-absorbed)

The scrubbed, in-repo sources of truth for the gbrain bootstrap wave:
AGENT_BOOTSTRAP_DESIGN.md (product scope/sequencing) and
AGENT_BOOTSTRAP_PLAN.md (implementation; all review-finding IDs inlined).

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat(bootstrap): format spec, question bank, identity templates, bundled assets

agent.json manifest (format_version 1, initialized sentinel) + machine-local
install receipt [CX2-1, CX2-12]; 12-question/6-required interview bank with
consent keys and a persist:false sink for the optional provider key [CX2-13];
ten {{TOKEN}} identity templates (generic, adapted to gbrain ops — gates call
recall/query/put_page, write-through-ops rule, keyless agent-authored facts,
silence contract); assets embedded compiled-binary-safe via file-type imports
[ENG-6].

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat(bootstrap): runbook, README paste block, bootstrap guide, TODOS entries

BOOTSTRAP_FOR_AGENTS.md (agent-driven install runbook: CLI phase list is the
source of truth, never-invent rules, Codex approvals preflight, keyless posture,
failure-modes table, version stamp for the skew check); README gains the
full-agent paste block pinned to latest-stable inside the Claude Code/Codex
quick start (memory-only tier stays); docs/guides/bootstrap.md carries the full
install/security/consent/degradation/uninstall contract.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* docs(designs): spike instrument for the bootstrap wave (build order 0)

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat(bootstrap): interview + render engines

Interview gate with read-back confirm-hash (any later answer change clears the
confirmation — the hostile single-batch case is structurally impossible),
per-answer provenance, caps + escaping at set time, config-sink routing for the
provider key; renderer with hard-fail token sweep, subordinate fencing of
principal input, never-clobber + backups, deterministic minimal mode for the
template repo, scaled byte floors. 58 unit tests.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat(bootstrap): private-repo lifecycle — repo create, attach, uninstall, run lock

gh-gated private repo creation with API-verified privacy (rate-limit distinct
from public), refuse-foreign-origin with attach as the sanctioned path, atomic
bootstrap mutex (pid liveness + age + token), receipt-keyed uninstall that
never wholesale-deletes the gbrain home and only offers --delete-brain for a
brain it created; read-only PGLite lock probe (never opens the engine).
54 unit tests, injectable exec seam throughout.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat(release): latest-stable ref, template-repo publish job, bootstrap CI guards

release.yml advances the latest-stable tag only after assets publish (the paste
block's permanent ref — copies in the wild never rot) and gains a PAT-gated
publish-template job verified against the vendored tree; two skip-graceful
guards (sanctioned-ref + runbook stamp; template/token bijection + placeholder
assertion + generator byte-diff) wired into verify; README + runbook re-admitted
to the CI cache hash; vendored deterministic template tree generated.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat(context): IPC v2 turn_context + 8KB assembly + visibility resolver + session identity

Discriminated-union IPC with handler map, protocol echo (stale-serve detection),
shared-secret gate, server-side source binding, per-kind budgets; turn-context
assembly (reflex pointers + volunteered pages + world-only hot facts) under a
data-not-instructions envelope trimmed to the harness's 10KB hook-output cap;
facts.default_visibility resolved through one helper at all four sites (explicit
caller wins, typos fail closed); typed sessionId threads _meta.session_id into
the hot-memory cache key. 50 new tests; 180 adjacent tests confirmed green.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat(persistence): secret-scan, gbrain sources push, durability unification

Pattern secret scanner (own runtime allowlist, redacted previews, corpus-write
redaction mode); sources push runs the whole scan→stage→commit→pull→push
sequence under one cross-platform lock (mkdir-atomic, pid+age+token) with a
deny-glob backstop, commit-first divergence-safe pull, refuse-unverifiable
visibility, and push-status telemetry; gbrain-home choke point unifies
GBRAIN_HOME semantics with config (0700); durability is parent-repo-aware and
rotates its push log at 0600. 35 new tests; 200 existing green.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(sources): harden/pull gates accept sources inside a parent git repo

The bootstrap workspace registers brain/ (a subdirectory) as the source; the
durability core already resolves the repo root, so the command gates now check
inside-a-repo rather than .git-right-here [CX2-3].

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat(serve): resident maintenance sweep + keyless capability probe

The lock-owning serve process now closes the persistence loop: startup (3s
post-connect, best-effort, unref'd) and idle (10-min quiet intervals through
the injectable timer seam) sweeps run facts-fence reconciliation, deterministic
link/timeline extraction over recent workspace pages, and spend-gated corpus
ingest (skipped keyless — agent-authored fences cover it). gbrain sweep --once
is the trusted CLI seam bootstrap verify uses. Capability probe renders the
honest keyless/keyed report. Full reuse of the cycle extractor + extract cores;
26 new tests, neighbors green.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat(hooks): engine-free gbrain hook command, settings writers, transcript parser

Four hook events (session-start digest + crashed-session recovery push,
user-prompt turn-context injection under an 800ms deadline and the 10KB cap,
stop buffers, session-end corpus write with redaction/retention/dedup +
best-effort push); structural JSON settings merger keyed by a _gbrain marker
(foreign hooks and permissions survive); dated host-spec registry; Claude Code
.jsonl parser as a spec-target with a scrubbed 7-shape fixture. Heartbeat is
counters-only by construction. 59 tests; zero engine modules in the import
graph.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* docs(bootstrap): cross-link the full-agent path from the connection docs

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat(bootstrap): dispatcher, verify, status — the command assembled

gbrain bootstrap {status,interview,render,repo,hooks,verify,uninstall,attach}:
engine-free except verify (owns its engine, in-process sweep — no live-serve
conflict); phase list is the TS source of truth with install.jsonl telemetry
and the support blob; verify's fail-soft check suite covers the real write path
(put_page → write-through file → sweep → graph floor → recall), passes keyless,
persists snapshots, and ends with the first-run tour. cli.ts wired per the
three-touchpoint rule; doctor gains the bootstrap check group (silent on
machines with no bootstrap state). 28 new tests; 353 adjacent green.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* docs: KEY_FILES bootstrap cluster + CLAUDE.md dispatcher row (+ build:llms)

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* test(bootstrap): e2e pins — hook-under-live-serve, attach, degraded modes, compiled binary, Docker harness

The permanent pins: a real serve holds the PGLite lock while the engine-free
hook completes (and a direct engine open provably throws LiveServeLockError);
stale-socket fail-open; machine-2 attach with marker-keyed hook repair;
decline-everything installs verify green with every degradation named; the
compiled binary renders bundled templates in an empty cwd. Offline Docker
harness (networkless, read-only) gated into heavy-tests.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(bootstrap): register doctor check categories + system-of-record allow comments

The six bootstrap doctor checks join OPS_CHECK_NAMES; the sweep's batch link/
timeline inserts carry the explicit extract-path allow comments (the sweep IS
the extraction path for workspace pages).

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(test): shard wedge cap tracks suite growth (1500s -> 1800s)

At ~9000 tests a healthy shard finished at 1466s and two progressing shards
were false-killed at the old cap; 1800s restores ~25% headroom over the
slowest observed healthy shard. Real hangs still hit it.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* test(ci): cache-hash policy — README + runbook edits must invalidate [C2]

The old deny-list assertion predates the paste block; README.md and
BOOTSTRAP_FOR_AGENTS.md are policy-doc re-admissions now, so their edits must
change the hash (a paste-block edit shipping under a cached green was the C2
hole).

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(test): classify post-suite exit-hangs as warn-pass; file the leak forensics

A shard killed by the wedge watchdog with every assigned file started and zero
fail markers did all its work and leaked a handle at exit — pre-existing and
master-reproducible (P1 TODO carries the full bisect forensics). Bun's per-test
timeout turns a hung test into a (fail), so the classifier cannot mask one.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(test): shard cap 2400s — the count-balanced heavy shard needs it under contention

Observed: the heavy shard still progressing 22s before an 1800s kill while
siblings finish at 1150-1550s (split balances file count, not weight). Filed
the load-sensitive WAL-repair flake (pre-existing, master's v0.42.75.0 wave).

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* test(bootstrap): quarantine env-mutating suites to the serial lane

check-test-isolation R1: six new files mutate GBRAIN_HOME/env at module scope —
the serial lane (one process per file) is the guard's prescribed home for them.
All 114 tests pass post-rename.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* docs(readme): per-harness install sections — Codex, Claude Code, then OpenClaw/Hermes

Each harness gets its own complete paste-block section (desktop app first,
terminal noted — Claude Code CLI is the identical harness; Codex CLI works
pull-based today); the OpenClaw/Hermes platform path keeps equal weight with
its one-click deploys and INSTALL_FOR_AGENTS block intact; memory-only and
remote-connect tiers consolidated under 'Lighter ways in'. Supersedes the
review's D5 ordering by user direction; stale heading references updated.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* docs(readme): Codex as the recommended first step; OpenClaw/Hermes framed as-intended, high-cost

The install section now routes newcomers explicitly: Codex first
(subscription-priced, nothing to deploy), OpenClaw/Hermes as GBrain used the
way it was designed — always on, at real server + API cost.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix: doc-audit code chasers — broken recovery hints, stale op description, auto_link key

Four small code fixes surfaced by the markdown accuracy audit:
- doctor's auto-RLS recovery hint pointed at `apply-migrations --force-retry 35`,
  which cannot work (--force-retry targets the vX.Y.Z orchestrator registry, not
  the numeric schema MIGRATIONS array). Hint now points at the recreate SQL in
  docs/guides/rls-and-you.md; test pins against regression.
- v0_11_0 migration printed the same broken-mechanism class of hint
  (`config set minion_mode` writes DB config nothing reads); now names
  `apply-migrations --mode` + preferences.json, the real setter.
- submit_job's op description hardcoded a stale handler list; now points at
  registerBuiltinHandlers as the source plus the --follow discovery trick.
- `auto_link` added to KNOWN_CONFIG_KEYS: read by link-extraction, reconcile-links,
  and sweep, and documented as the off-switch in brain-ops/maintain, but the
  allowlist rejected `config set auto_link false`.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* docs: repo-wide accuracy + MECE reform from the 9-bucket markdown audit

A code-grounded audit of every markdown file (root, architecture, guides,
mcp, tutorials, docs-root, operations/eval/designs, skills, recipes) followed
by a fix wave with per-bucket ownership. Four classes of change:

Accuracy — every documented command/flag verified against src/ before writing:
dead commands replaced with working ones (pages purge-deleted, jobs watch
--follow, gbrain restore, import-based Obsidian flow, space-separated --scopes,
real thin-client recipes, working isolation verification, real supervisor
restart procedure, curl-based ngrok health check, real minion_mode setter);
count drift fixed with rot-proof phrasing (100+ ops, 50+ bundled skills via
skills/manifest.json, 140+ engine methods, KNOBS_HASH_VERSION pointer instead
of hardcoded versions); stale claims corrected (search-mode defaults, RETRIEVAL
pipeline order incl. autocut, sentinel rules, refusal-list mechanism, engine
snapshot, shard cap 2400s + EXIT-HANG classifier in TESTING.md, latest-stable +
publish-template documented in RELEASING.md as release.yml promises).

MECE — one home per concept, pointers elsewhere: test isolation → TESTING.md;
OAuth registration + --bind/--public-url lore → DEPLOY.md; mode bundles →
guides/search-modes.md (the home the CLAUDE.md dispatcher always promised);
merge contract → schema-packs.md; WAL ladder → ENGINES.md; quiet-hours →
quiet-hours.md; capture taxonomy → entity-detection.md; person-page taxonomy →
compiled-truth.md; brain-first protocol → brain-first-lookup.md; refresh
semantics → refresh-algorithm.md; KEY_FILES.md deduplicated (58 extension
entries merged, one entry per file); infra-layer.md rewritten as a pointer page.

Privacy — placeholder sweep across guides, docs, skills, and recipes per the
iron rule; per-release narration stripped from reference docs (current-state
prose only).

Bootstrap coverage — AGENTS.md pointer, RESOLVER routing row, INSTALL.md path,
tutorial cross-links, keyless-mode sections in spend-controls/headless-install.

skills.lock.json regenerated; llms.txt/llms-full.txt rebuilt. Gates: verify
36/36, typecheck clean, doctor 96/96, skills-integrity + resolver + build-llms
+ config-set + migrations all green.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* docs(readme): refresh production-brain stats to current brain-repo counts

155,795 pages / 24,589 people / 5,340 companies, counted from the brain
repo's current HEAD; the "100K-page brain" framing moves to 150K to match.
Cron-fleet count unchanged (its store lives on the deployment host, not in
the repos available for verification).

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(scan,push): modern OpenAI/Voyage key patterns, scan staged blobs not disk

- secret-scan matches sk-proj-/sk-svcacct-/sk-None- and pa- Voyage keys
  (the bare sk- pattern missed every current OpenAI key format).
- workspacePush stages first, then scans the staged index blobs via
  git cat-file, closing the scan-then-stage TOCTOU where a file changed
  between snapshot and commit shipped unscanned.
- shared binary-sniff helper, memoized glob regexes, atomic push-status
  write, and tests for pull_conflict + gitignored deny-match paths.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(ci): regenerate flag registry for new commands, harden shard classifier + release token

- cli-flag-registry.generated.ts regenerated: bootstrap/hook/sweep and
  sources push --message/--allow-unverified-remote were missing, so the
  strict #2185 validator rejected real invocations and skipped the new
  commands entirely.
- EXIT-HANG shard classifier now requires every assigned file to have
  started before warn-passing a watchdog kill (was fail-open).
- release.yml passes TEMPLATE_REPO_PAT via http.extraheader, off the argv.
- compiled-binary e2e fails loud in CI instead of a silent permanent skip.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(hook,sweep,ipc): non-blocking hook pushes, bounded sweep + cache, source-bound resolve

- session-start/session-end no longer run synchronous git + inline push
  inside their self-deadline; a detached child does the push and the hook
  returns immediately (blocked Claude Code startup for minutes on a dirty
  tree before).
- serve sweep drops the unbounded listAllPageRefs, resolves only candidate
  targets, claims corpus files atomically (no double-LLM-spend race), and
  caps the fence LIKE scan; heartbeat writes are O_APPEND with rare compaction.
- hot-memory cache evicts expired entries and bounds entry count (the key is
  caller-controlled via _meta.session_id).
- v1 resolve IPC honors boundSourceId like turn_context; turn-context runs
  its arms concurrently. doctor reads push/heartbeat thresholds from hook.ts.
- new tests: doctor bootstrap checks, hook push-gate + deadline, concurrent
  sweep claims, cache eviction, bound-source resolve.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(bootstrap): origin-ownership gate, world visibility, collision-safe source id, consent + templates

- repo adoption requires an exact receipt repo_url match or authed-owner
  check (undefined repo_url was a wildcard); create verifies privacy BEFORE
  the first push.
- verify sets facts.default_visibility=world if unset, so agent-authored
  facts surface in per-turn context (they defaulted private before).
- source_id derives a path-hash suffix when 'workspace' is taken by another
  checkout; every consumer reads manifest.source_id.
- skipped HOOKS_CONSENT now declines (was falling through to default yes);
  --minimal refuses on an initialized manifest; tilde fences escaped.
- MCP registration pins --surface full; status hard-fails a public origin
  (template door); receipt writers guard against newer/corrupt receipts;
  uninstall only claims brain-deleted after a real rm.
- templates ship jobs disabled + provider-consent + support-relay lines;
  soul-audit re-runs over the shared interview bank. TODOS: 11 follow-ups.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(security): close adversarial-review findings — scan fails closed, whole-PEM redaction, bound repo push

Cross-model adversarial pass (Claude + Codex) on the bootstrap wave:

- secret scan fails CLOSED: an unreadable, oversized, or binary staged blob
  now blocks the push (blocked_unscannable, exit 5) instead of committing
  unscanned; only a confirmed staged deletion is skipped. This was the
  headline "block secrets before they leave the machine" property failing open.
- private-key redaction spans the whole PEM block (header+body+footer), not
  just the header line — the base64 body no longer survives into the corpus
  the sweep sends to an extraction provider.
- bootstrap repo commits the workspace (secret-scan-gated) before the first
  push and verifies the remote actually received it, so a push-fail retry
  can't adopt an empty remote as success.
- privacy verify is re-bound to origin immediately before push (a concurrent
  origin rewrite between verify and push is refused).
- session-end corpus write is atomic and clears the stale ingested/in-progress
  sidecars so a resumed session's appended transcript is re-ingested.
- public-origin refusal enforced at render (not only status); MCP "already
  registered" is verified to target this workspace, not blessed blindly;
  verify probe cleanup scopes deletes to its own slugs, not a token substring;
  allowlist fingerprint floor raised 8→16 hex.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* v0.45.0.0 feat(bootstrap): paste-in personal-agent install for Codex + Claude Code

Turns a Codex or Claude Code session into a persistent personal agent:
interview-rendered identity files, a local PGLite brain, per-turn context via
serve IPC (Claude Code hooks / Codex pull protocol), session-triggered
persistence, and a private GitHub repo as the agent's portable body. Keyless-
first (the harness model is the LLM; one optional key adds embeddings +
extraction). New `gbrain bootstrap` command family + `gbrain hook` + `gbrain
sweep`; doctor bootstrap health checks; latest-stable distribution ref +
template-repo publish job. Opt-in, additive — existing installs untouched.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix: regenerate flag registry for security-fix flags; drop fabricated gbrain capabilities doc ref

CI caught two real failures under the merged state:
- the flag registry lagged the blocked_unscannable/exit-5 flags the security
  round added, tripping the #2185 freshness guard.
- headless-install.md described the keyless capability report as a
  `gbrain capabilities` command, which the #3502 doc-command resolver
  rejects — reworded to prose (the real surface is bootstrap verify's report).

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* docs: sync KEY_FILES + bootstrap plan to security-fix behavior

Cross-referenced the security-fix round against the reference docs and
corrected the drift those commits introduced:

- workspace-push.ts entry: stage-FIRST-then-scan order (the TOCTOU fix),
  fail-closed blocked_unscannable, and the sources-push status -> exit-code map.
- hooks.ts entry: MCP registration pins `serve --surface full`.
- hook.ts entry: session-start/session-end pushes run in a detached child
  (non-blocking); atomic corpus write clears stale sidecars.
- bootstrap.ts entry: render hard-refuses a public origin (template door).
- verify.ts entry: source_id collision resolution (workspace-<path-hash>).
- AGENT_BOOTSTRAP_PLAN as-shipped delta note for the scan/stage reorder.

llms bundle unchanged (KEY_FILES is link-only); build:llms and
test/build-llms.test.ts green.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(ci): silence SC2016 on the intentional askpass literal in release.yml

The one-shot GIT_ASKPASS script must contain literal $1 and
$TEMPLATE_REPO_PAT so they expand when /bin/sh runs it at git's credential
prompt, not when the outer shell writes the file — single quotes are correct.
Add a scoped shellcheck disable so actionlint passes.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(skills): declare 'bootstrap my data' trigger in cold-start frontmatter

The doc reform added 'bootstrap my data' to cold-start's RESOLVER.md row (to
disambiguate data-bootstrap from agent-bootstrap) but not to the skill's own
frontmatter triggers, tripping the RESOLVER↔frontmatter round-trip contract
(resolver.test.ts). Declare it; regenerate skills.lock.json.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* feat(bootstrap): default per-turn hooks + search mode ON without a prompt

Installing gbrain for your coding agent IS the consent for the behaviors that
make it work, so stop re-litigating them with install-time questions whose
"no" defeats the product:

- Per-turn hooks (Claude Code) install ON by default — no prompt. Off-ramps:
  `--no-hooks` at install, `GBRAIN_HOOKS=0` at runtime, `bootstrap uninstall`.
  The "hooks installed" line now surfaces the kill switch so default-on is
  never silent. A persisted HOOKS_CONSENT=no (interview --skip) still declines.
- Search mode defaults to `balanced` silently (nobody knows the modes at
  install; `gbrain search modes` changes it any time).
- MCP scope stays the ONE deliberate prompt — project vs user is a real
  cross-repo privacy choice, not friction.

Marks the two consents `silent: true` in the question bank (new QuestionSpec
field), rewrites the runbook phases so the agent no longer asks them, adds the
`--no-hooks` flag (+ registry regen), and adds default-on / opt-out tests.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* test(bootstrap): real end-to-end coverage — cross-session recall, per-turn content, Codex door, realistic corpus

Closes the seven e2e gaps a coverage audit surfaced: the plumbing was
well-unit-tested but the product claims ("Codex works, context shows up every
turn with real content, it remembers across restarts, machine two recovers,
Postgres works") were unproven end to end. Test-only wave — zero src changes.

- Hermetic synthetic corpus (test/fixtures/bootstrap-corpus/ + a loader helper):
  12 interlinked pages (52 edges, timelines), 12 world/private beliefs, 8 gold
  queries — curated from the gbrain-evals synthetic corpora, 100% placeholder
  names, so recall is asserted on a real multi-entity brain instead of a
  2-node self-planted probe.
- GAP1 magic moment: author a fact via the real write path, disconnect the
  engine, reopen against the same DB, recall it — a real session boundary, not
  verify.ts's same-connection SQL read-back. Plus a source-isolation assertion.
- GAP2 per-turn content: hook-under-serve Pin 1 now seeds a known fact and
  asserts its text lands in the injected block AND private beliefs never do
  (was: empty brain, empty_block accepted as a pass).
- GAP3 Codex door: assert the rendered AGENTS.md carries the Gate-3 brain-first
  pull protocol; make the fake codex shim implement `mcp get` so the [FIX7]
  target-verification can actually fail; the Docker cold-machine harness now
  exercises the hooks/MCP registration step instead of skipping it.
- GAP4 corpus recall: turn-context + verify graph-floor/qrels run on the real
  multi-entity brain with real edges.
- GAP5 attach: machine-two now re-ingests the cloned brain/ into a fresh DB and
  recalls a fact authored only on machine one — the multi-device payoff.
- GAP6 keyed + Postgres (env-gated): real embeddings prove semantic recall a
  paraphrase query can reach but keyless BM25 cannot; bootstrap verify drives a
  real Postgres engine (skipIf DATABASE_URL/keys absent).
- GAP7 persistence: session-end runs the REAL push (not the mocked seam) to a
  local bare remote and the remote receives the content; a planted secret is
  blocked at the gate; the 15-min cron installs and fires a scan-gated push.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* test(bootstrap): real-agent e2e — drive the actual claude + codex binaries end to end

Closes the audit's biggest gap ("no real harness ever drives a turn"). Adapts
gstack's PTY/headless agent harness to prove the bootstrap install + smoke work
against the REAL binaries, not PATH shims. Test/CI/docs only — zero src changes.

- test/helpers/agent-harness.ts: hermetic clean-room child env (ported from
  gstack; drops CONDUCTOR_/CLAUDE_/GSTACK_/MCP_/GBRAIN_, promotes
  GSTACK_ANTHROPIC_API_KEY→ANTHROPIC_API_KEY), real-binary resolvers + auth
  probes, headless `claude -p --output-format stream-json` and `codex exec
  --json` turn runners, a gbrain stdio MCP-config writer, and a keyless brain
  seeder. + a fixture-parse unit test (no binary needed).
- test/e2e/bootstrap-real-claude.serial.test.ts: real `gbrain bootstrap`
  install → REAL `claude mcp add` (verified via `claude mcp get`) → verify
  exit 0 → a real `claude -p --mcp-config --strict-mcp-config` turn that
  invokes mcp__gbrain__search and answers from the brain (proven: toolCalls
  include mcp__gbrain__search, final text carries the seeded fact).
- test/e2e/bootstrap-real-codex.serial.test.ts: same install with REAL `codex
  mcp add` into a real ~/.codex/config.toml + Gate-3 pull-protocol assertion,
  then a real `codex exec --json` turn surfacing the fact (MCP or the pull-
  protocol shell path). Bounded retry absorbs codex's occasional MCP-call
  cancellation without softening the fact-requiring assertion.
- Everything hermetic (temp HOME/CLAUDE_CONFIG_DIR/CODEX_HOME/GBRAIN_HOME;
  real ~/.codex auth copied read-only) and skipIf-gated so it self-skips
  cleanly where the binaries/auth are absent.
- heavy-tests.yml: gated `real-agent-e2e` job (nightly/label, never the PR
  shard; no-op on a runner without authed binaries).
- TODOS: compiled `gbrain` binary can't serve a PGLite brain (bun compile
  omits the WASM/extension payloads); harness falls back to `bun run` serve.

Verified against live claude 4.6 + codex 0.147.0: 15 pass / 0 fail; verify
36/36; typecheck clean.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(ci): real-agent-e2e job — bash array + --timeout (actionlint SC2086 + bun-test-timeout guard)

The real-agent-e2e job's file loop used an unquoted $FILES (SC2086) and ran
`bun test` without --timeout (check-bun-test-timeout guard). Switch to a bash
array and add --timeout=600000 (real-agent turns are slow; the tests self-skip
without authed binaries so it's a no-op elsewhere).

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(pglite): embed WASM + extension assets so the compiled binary can serve

A `bun build --compile` gbrain binary could not `serve` a PGLite brain: the
compile bundles JS but not PGLite's runtime payload (pglite.wasm, initdb.wasm,
pglite.data, vector/pg_trgm tarballs), so `serve` on PGLite died with a
bunfs/ENOENT. Now the assets ride inside the binary.

- src/core/pglite-embedded-assets.ts: embeds the five assets via
  `import … with { type: 'file' }` (the ENG-6 idiom) and exposes
  getEmbeddedPgliteOptions() → { pgliteWasmModule, initdbWasmModule, fsBundle,
  extensions:{vector,pg_trgm} }. WASM/fsBundle are consumed as bytes; the two
  extension tarballs are materialized to a content-addressed temp file (atomic,
  size-verified reuse) because PGLite reads them via fs.createReadStream, which
  cannot read a /$bunfs path. Unconditional (works in bun-run and compiled),
  so no fragile mode branch.
- src/core/pglite-engine.ts: static-import getEmbeddedPgliteOptions (engine
  path stays static per the engine-dynamic-import invariant); spread into both
  PGlite.create sites (initial + WAL-repair retry). The bunfs classifier stays
  as a backstop but no longer fires for a correct binary.
- scripts/check-pglite-embedded.sh (+ smoketest): compiles a focused binary and
  asserts it boots PGLite, CREATE EXTENSION vector/pg_trgm, and round-trips a
  page — wired into `bun run verify` (now 37 checks), check:all, and
  check:pglite-embedded. Fail-soft only when compile is unavailable.
- agent-harness.ts probeCompiledPglite now passes → the real-agent e2e uses the
  fast compiled MCP server. TODOS: the P2 "can't serve PGLite" item is closed.

Verified: fresh compiled binary ran `search`/`query` against a PGLite brain and
returned the seeded row (no bunfs/ENOENT); verify 37/37; pglite-engine 120/0
source-mode; typecheck clean; engine-dynamic-import + parity guards pass.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(source-health): wall-clock ceiling for content-relative staleness

A source whose stored content timestamp trailed its last sync reported
zero lag forever — the shape that let a dead sync daemon stay invisible
for 71 days. lagFromContentMs now ramps toward stale past a ceiling
(default 72h, GBRAIN_STALENESS_CEILING_HOURS / GBRAIN_SYNC_FRESHNESS_FAIL_HOURS)
instead of returning a flat 0; ramping rather than stepping keeps the
warn tier firing before the fail tier across sync_freshness,
federation_health, and gbrain status. The ceiling resolves once per
report (hoisted out of the per-source loops), and the numeric env
plumbing moves to a shared warn-once resolver (src/core/env-number.ts)
so doctor and source-health share one memo instead of warning twice.
Doctor's wedged-lock alarm prints minutes below one hour so a
fractional ceiling override cannot produce a "held the lock for 0h"
message.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(autopilot): heartbeat-truth status, self-disable guard, migrate quiesce fence

Status becomes honest and engine-free: a pure classifier maps heartbeat
age, markers, and install detection to not_installed/disabled/paused/
never_run/stale/fresh with exit codes 0/1/2, dispatched in cli.ts before
connectEngine so a live PGLite daemon's exclusive lock or a DB outage
cannot take down the alarm. Tolerance is six intervals (the adaptive
scheduler sleeps two between ticks on healthy brains; three flapped
false alarms), NaN-proof at both parse sites, and a cron'd status
monitor line no longer reads as an install.

The generated wrapper self-disables for real when its repo vanishes —
marker first, then supervisor-specific stop (launchctl bootout /
systemctl disable) since a bare exit 0 under KeepAlive is just a quieter
respawn loop — and requires three consecutive misses so a slow-mounting
volume cannot permanently kill a healthy install. Install and uninstall
clear both markers; wrapper artifacts resolve through gbrainHomePath
with GBRAIN_HOME baked in at install time.

gbrain migrate quiesces the whole write plane for its copy window: an
unconditional atomic pause-marker claim doubles as the migration mutex
(a live holder, a foreign hold, or an unwritable marker all abort;
orphan adoption is renameSync compare-and-claim), in-flight writers
drain via the DB lock table plus active-job count (supervisor presence
locks excluded) before enumeration, minion workers stop claiming queued
jobs while the marker is parked, cleanup registers at claim time, the
daemon self-clears a dead migrate's orphan, and after a clean config
flip the daemon detects the engine identity change and relaunches onto
the new engine instead of syncing into the abandoned one indefinitely.
Malformed connection URLs classify as operator config verdicts rather
than crashes, and torn config reads cannot spuriously restart the
daemon.

Marker paths, the launchd label seam, and the pid-ownership primitives
live in the new leaf module src/core/autopilot-paths.ts so migrate and
the worker never import the autopilot command surface (flag-registry
pooling); the regenerated registry reflects the new one-level imports.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(embed,sync): keyless stale embed refuses cleanly; typechange statuses; test-home isolation

The documented agent-scheduler chain (sync, then a stale embed) exited 1
on every keyless brain because EmbeddingDisabledError fell through to a
blanket exit. A bare stale run now refuses cleanly via the pure
isKeylessStaleRefusal predicate (stderr hint, zero-failure result);
explicit asks — a slug, a slugs list, the all flag — still exit 1,
mirroring the dispatch precedence where a slugs list wins over stale.

buildSyncManifest handles the T/U/C git statuses instead of silently
dropping them (typechange routes to modified; the file-to-symlink
staleness residual is documented and filed). Status reports gain
hours_since_last_sync so the ceiling-ramped staleness_hours stops
doubling as the human-facing wall-clock number.

The sync-failures ledger honors GBRAIN_SYNC_FAILURES_DIR and the test
preload (bunfig) points it at a scratch dir, so test runs stop writing
failure rows into the developer's real brain home.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* test(e2e): real-launchd lifecycle + agent-scheduler contract harness tier

Two serial-lane e2e files that assert behavior, not artifacts: a
launchd lifecycle suite (shimmed supervisor on every platform; REAL
launchd on darwin under a per-run unique label, own-label cleanup only)
driving install, self-disable via three strikes, status exit codes,
reinstall, and uninstall through the actual CLI; and an
agent-scheduler contract suite that runs the documented sync-and-embed
shell chain end-to-end against a keyless brain, including the
pull-failure case that must break the chain and the heartbeat that must
advance on quiet re-runs.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* docs: KEY_FILES current-state for the brain-currency wave; BRAIN_CURRENCY design doc

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(migrate,minions): ownership-conditional pause release + post-claim fence re-check

Round-4 adversarial hardening on the quiesce protocol. Orphan adoption
verifies identity AFTER its atomic rename — a racer that completed the
whole adopt-and-rewrite in the read-to-rename gap gets its live marker
restored no-clobber instead of stolen. Marker release compares content
before unlinking, so a claim that changed hands can never delete the new
owner's fence mid-copy. On the worker side, a job whose claim committed
after migrate's drain probe is released back to the queue un-run
(delayed one minute, conditional on our lock token) instead of executed
into the doomed source engine. The cross-host residual — a worker on
another machine never sees a local marker file — is filed as the
DB-visible-pause follow-up.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* test(autopilot): migrate the crontab wrapper-detection pin to the pure seam

The inline crontab.includes check this static pin matched became
crontabIndicatesAutopilotInstall; the pin now exercises the function
directly (wrapper line still detected) and asserts the detect path is
wired through it.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* v0.46.0.0 feat(autopilot): brain currency — honest daemon health, migrate quiesce fence, keyless scheduler chain

VERSION + CHANGELOG + TODOS for the brain-currency PR-A wave, plus the
version-stamped bootstrap runbook and vendored template regen.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* docs: sync documentation for v0.46.0.0

The brain-currency wave shipped new user-facing surface the guides did not
carry: the trustworthy autopilot --status exit codes (0/1/2 + paused),
the keyless-safe sync-and-embed chain, and the migrate quiesce fence.

- docs/guides/live-sync.md: keyless clean-refusal note on the embed --stale
  primitive; new "gate on the daemon's heartbeat" verify item with the
  exit-code contract.
- docs/guides/cron-schedule.md: the recommended autopilot health-gate cron
  line (the status classifier already special-cases this monitor line so it
  never reads as an install).
- docs/ENGINES.md: migrate --to now documents the pause-marker mutex, worker
  job-pickup fence, DB-lock drain (GBRAIN_MIGRATE_QUIESCE_SECONDS, default
  300), crash-safe release, and daemon relaunch after the flip.
- docs/operations/headless-install.md: keyless mode's "refuse cleanly" claim
  made concrete — the documented chain exits 0 on a bare stale embed.
- INSTALL_FOR_AGENTS.md Step 7: health-gate bullet + keyless-safe chain note.
- skills/maintain/SKILL.md: autopilot check now teaches the exit-code
  semantics and the --json report fields.
- docs/TESTING.md: inventory entries for the two new harness-tier serial
  suites (real-launchd lifecycle, agent-scheduler shell-chain contract).
- llms-full.txt regenerated (TESTING.md is inlined in the bundle).

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* docs: cross-model doc-review fixes for v0.46.0.0

Round two from the post-ship documentation review, checked against the code:

- CHANGELOG.md: two shipped fixes were missing from the 0.46.0.0 entry
  (git typechange/unmerged statuses no longer dropped by sync; a wedged
  lock holder past the staleness ceiling now fails doctor with the
  break-lock remedy), and the env-resolver bullet over-claimed its
  coverage — narrowed to the doctor + staleness-threshold vars it
  actually serves. Additive + accuracy only; no entries replaced.
- docs/guides/live-sync.md: Tricky Spots item for the staleness
  wall-clock ceiling (GBRAIN_STALENESS_CEILING_HOURS, default 72h,
  ramp-not-step) and the hours_since_last_sync status field.
- docs/ENGINES.md: the quiesce paragraph over-stated marker release —
  now describes the pid-checked orphan adoption, the daemon self-heal
  poll, and the confirm-the-pid manual step for daemonless hosts.
- docs/guides/minions-fix.md: the verify block's bare autopilot --status
  now notes the exit code is the verdict (and the set -e caveat).
- llms-full.txt regenerated.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* v0.45.5.0 chore(release): re-version 0.46.0.0 -> 0.45.5.0

Same release content; the version slots into the 0.45.x line per the
natural-next-off-master convention. VERSION, package.json, CHANGELOG
header, bootstrap runbook stamp, vendored template regen, lockfile, and
llms bundles all move together (trio audit green; stamp + template +
llms freshness guards re-run green).

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* chore(skills): refresh skills.lock version stamp for 0.45.5.0

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

---------

Co-authored-by: Claude Fable 5 <noreply@anthropic.com>
2026-08-12 09:40:57 -07:00

55 KiB
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Testing (gbrain repo)

On-demand reference (see CLAUDE.md Reference map). Current behavior + invariants only.

test/e2e/serve-http-oauth.test.ts additionally pins confidential POST/Basic revocation, public-client SDK fallthrough, malformed/mixed authentication rejection, cross-client isolation, unknown-token opacity, metadata auth methods, no-store responses, strict post-revoke 401, and retryable backend 503 semantics.

Test command tiers

Seven test command tiers, each with a clear scope:

Command What it runs Wallclock When to use
bun run test Parallel unit-test fast loop. Sharded fan-out via scripts/run-unit-parallel.sh (default 4 shards — CPU-detected, clamped to a max of 8; 4 matches CI's fan-out and avoids PGLite WASM-init contention), then a serial pass over *.serial.test.ts. Excludes *.slow.test.ts and test/e2e/*. No pre-checks, no typecheck. Memory-safe by default: total concurrency (shards × intra-shard files) is capped to available memory at GBRAIN_TEST_MEM_PER_FILE_MB (default 1536 — a PGLite WASM instance) per concurrent file, and two phantom-failure classes are automatically re-run serially (the rescue pass): failures carrying the WASM out-of-memory signature, and shards killed externally (SIGTERM/SIGKILL well before the shard timeout — sibling workspaces' process cleanup, memory jetsam). Phantoms pass serially and the run goes green with an oom_rescued note; real failures fail again serially and stay red. Knobs: GBRAIN_TEST_NO_MEM_ADAPT=1, GBRAIN_TEST_NO_OOM_FALLBACK=1, GBRAIN_TEST_MAX_CONCURRENCY (intra-shard, default 4), GBRAIN_TEST_SHARD_TIMEOUT / GBRAIN_TEST_SHARD_KILL_AFTER, plus --shards N / --max-concurrency N / --dry-run script args. a few minutes on a Mac dev box Inner edit loop. Default.
bun run verify CI's authoritative pre-test gate set, fanned out in parallel by scripts/run-verify-parallel.sh: the full check:* battery (privacy, jsonb, progress, source-id, test-isolation, wasm, …) plus bun run typecheck. The CHECKS array in that script is the single source of truth — CI literally calls bun run verify in a dedicated job. ~16s (parallel; typecheck dominates) Before pushing; before /ship.
bun run test:full verify && bun run test && bun run test:slow && [smart e2e]. The local equivalent of "everything CI runs." Smart e2e: runs e2e only when DATABASE_URL is set; else loud skip notice to stderr. ~3-5min depending on slow + e2e Pre-merge sanity, before opening a PR.
bun run test:slow Just the *.slow.test.ts set (intentional cold-path correctness checks). seconds-to-minutes When touching slow-path code.
bun run test:serial Just the *.serial.test.ts set (cross-file-contention quarantine; one bun process per file for true module-registry isolation). ~1s per quarantined file Debugging a specific quarantined file.
bun run test:e2e Real Postgres E2E. Requires Docker + DATABASE_URL. Sequential. ~5-10min Pre-ship; nightly.
bun run check:all The historical pre-check scripts (chained sequentially in package.json). Overlaps verify heavily but is NOT a superset — verify's CHECKS array in scripts/run-verify-parallel.sh is the authoritative gate; check:all keeps a few local-only extras (trailing-newline, exports-count, no-legacy-getconnection). ~10s Local-only sweep for the extras.

Shell dispatch and Windows

All four of test, verify, ci:local and test:e2e hand off to shell scripts under scripts/, so every check:* entry in package.json invokes its script as bash scripts/<name>.sh instead of relying on the shebang — bun on Windows cannot exec a .sh directly. Add a new shell-script check with that same prefix. The scripts/*.ts entries run under bun and take no prefix.

The scripts must also be on disk with Unix line endings. A strict bash (WSL, Linux CI, macOS) rejects CRLF and dies on the script's first meaningful line; the Cygwin bash that ships with Git for Windows tolerates it, so a green local run is not by itself evidence that a script is CRLF-clean. The root .gitattributes pins *.sh text eol=lf, which overrides the core.autocrlf=true default that Git for Windows installs. It pins *.md the same way, because the frontmatter readers anchor on a --- fence followed by a Unix line ending and a CRLF checkout makes a document parse as having no frontmatter, silently. Working copies cloned before those pins need a one-time git rm --cached -r . -q && git reset --hard to pick them up; see the Windows section of CONTRIBUTING.md.

Wallclock figures in the table above are from a Mac dev box. Windows is substantially slower because each check pays full process-creation cost, and three tree-walking checks (check:privacy, check:test-names, check:test-isolation) plus typecheck can exceed the 120s per-check cap in run-verify-parallel.sh there even though they pass on Linux and macOS.

CI vs local: intentionally divergent file sets

  • CI matrix (.github/workflows/test.yml) runs scripts/test-shard.sh across 10 matrix shards partitioned by weight-aware LPT bin-packing (scripts/sharding.ts) and INCLUDES *.slow.test.ts (the two outlier slow files run as dedicated jobs alongside the matrix). CI EXCLUDES *.serial.test.ts from the shards and runs them in a dedicated job via bun run test:serial, one bun process per file — keeping serial files out of the shard processes is what preserves the mock.module quarantine (a top-level mock in one file leaks into every other file sharing its process). bun run verify gets its own job too, as does the BrainBench memory-conformance gate (brainbench job → scripts/ci-brainbench-gate.sh, hermetic in-memory PGLite, ~15s), which compares HEAD's fresh run against master's committed baseline (evals/brainbench/baselines/main.json) — the test-status aggregate checks its result explicitly. CI is the ground truth for "did everything pass."
  • Local fast loop (scripts/run-unit-shard.sh via the parallel wrapper) uses round-robin-by-index sharding and EXCLUDES *.slow.test.ts AND *.serial.test.ts. Local trades coverage for inner-loop speed; CI catches what local skips.

This divergence is intentional. Don't try to make them equal — the two scripts deliberately solve different problems. The regression test at test/scripts/run-unit-shard.test.ts pins what the local fast loop should and shouldn't include; test/scripts/run-unit-parallel.test.ts pins the wrapper's memory-adaptive concurrency and the OOM/external-kill serial rescue pass.

Failure-first logging

When bun run test finds any failure, the wrapper:

  1. Writes failure blocks (each prefixed with --- shard N: <test name> ---) to .context/test-failures.log (workspace-local, gitignored). On systems without a writable .context/, falls back to /tmp/gbrain-test-failures.log.
  2. Prints a loud stderr banner with the absolute log path, plus the last 30 lines of the failure log inlined. Banner survives | head / | tail / agent-side log truncation.
  3. Writes a one-line-per-shard summary to .context/test-summary.txt (shard N/M: pass=X fail=Y skip=Z rc=W).
  4. Exits non-zero. Empty failure log + non-zero exit = infrastructure problem (wedged shard, killed child); the banner says so.

If a shard hits the per-shard GBRAIN_TEST_SHARD_TIMEOUT cap (default 3000s — sized so the heaviest count-balanced shard finishes under 4-way contention; GBRAIN_TEST_SHARD_KILL_AFTER sets the grace after TERM before KILL, default 30s), the wrapper classifies the kill one of two ways:

  • EXIT-HANG → warn-pass. If the shard's log had been silent for ≥300s at kill time AND shows zero (fail) markers, the shard finished all its work, leaked a handle, and never exited (a pre-existing, master-reproducible PGLite-adjacent leak — see TODOS.md "unit-shard exit hang"). The wrapper prints a ⚠️ shard N/M: EXIT-HANG ... Treating as pass-with-warning banner, writes EXIT-HANG (idle Ns, 0 fails) ... warn-pass to the summary, and does NOT fail the run. Its pass counts are undercounted (bun never printed its final summary). Bun's per-test --timeout turns a genuinely hung TEST into a printed (fail) — new output — so this classification cannot mask a hung test; the residual maskable case is a file-level import hang in the very last file, which the banner keeps visible.
  • WEDGED → hard failure. Anything else (failures present, or the log was still growing) writes --- shard N: WEDGED after ${SHARD_TIMEOUT}s --- to the failure log with the last 50 lines of the shard log, marks the run failed, and proceeds with other shards' results.

Triage rule: a warn-pass EXIT-HANG line in .context/test-summary.txt is NOT a test failure — don't burn time bisecting it; a WEDGED line is.

File taxonomy

  • *.test.ts → fast loop (parallel up-to-4-shard fan-out, memory-adaptive).
  • *.slow.test.ts → run via bun run test:slow only (intentional cold-path tests; would dominate the fast loop's wallclock).
  • *.serial.test.ts → run via bun run test:serial after the parallel pass completes; one bun process per file (--max-concurrency=1 within a shared process is not enough — the module registry still leaks mock.module). Quarantine for tests that share file-wide state and race when run alongside other files in the same bun test process. Several dozen files, discovered by the *.serial.test.ts glob — no list to maintain. Typical residents: mock.module(...) users (top-level mocks leak across files in a shard process, e.g. test/embed.serial.test.ts), env-coupled files (e.g. test/brain-registry.serial.test.ts), and process-lifecycle suites that assert on process.exitCode (e.g. test/pglite-engine-disconnect.serial.test.ts). Do not put the parallelism back on a serial file unless you've fixed the contention root cause (it just re-introduces the flake).
  • test/e2e/*.test.ts → real-Postgres E2E. Skipped when DATABASE_URL is unset.
  • tests/heavy/*.sh → ops-shape shell scripts. Cost minutes per run; NOT in default bun test. Run via bun run test:heavy or scheduled nightly via .github/workflows/heavy-tests.yml. Examples: pg_upgrade matrix (boot legacy brain → walk to head), RSS budget gate (measure peak worker RSS vs committed baseline), read-latency-under-sync (p50/p95/p99 under concurrent writer load), sync lock regression (N concurrent syncs assert 1 winner + N-1 lock-busy + zero leaked gbrain_cycle_locks rows). See tests/heavy/README.md for when to add a script here vs *.slow.test.ts. Files prefixed with _ (e.g. tests/heavy/_build_legacy_fixtures.sh) are helpers/libs invoked by sibling tests — the runner skips them.
  • test/fuzz/*.test.ts → property-based fuzz harness. Pure-validator targets in pure-validators.test.ts are guarded by scripts/check-fuzz-purity.sh (in bun run verify), which bun build --target=bun bundles each target and greps the resulting bundle for banned transitive imports (node:fs, node:child_process, engine modules). Anything that fails the guard moves to mixed-validators.test.ts (still property-tested, but no purity guarantee) or filesystem-validators.test.ts (fs-backed, uses temp dirs). Fuzz tests run in the default bun test loop because they're fast (~3s for ~12 properties × 1000 runs each).

Skills-manifest freshness guard

skills/skills.lock.json is a committed sha256 inventory of every bundled file under skills/ (tamper evidence, not signatures — see src/core/skills-integrity.ts). Any change under skills/ must regenerate it: bun run scripts/generate-skills-manifest.ts. scripts/check-skills-manifest-fresh.sh (bun run check:skills-manifest, wired into bun run verify) regenerates to a tmp file and diffs, failing CI on drift; at runtime gbrain doctor reports the same drift as a warn-only skills_manifest_integrity check.

Test-isolation lint and helpers

This section is the canonical home of the test-isolation discipline — CONTRIBUTING.md and other docs link here rather than restating the rules.

The cross-file flake class is enforced statically by scripts/check-test-isolation.sh, wired into bun run verify and bun run check:all. Rules (non-serial unit files only; *.serial.test.ts and test/e2e/* are skipped):

Rule What it bans Fix
R1 process.env.X = ..., bracket assignment, delete process.env.X, Object.assign(process.env, ...), Reflect.set(process.env, ...) Use withEnv() from test/helpers/with-env.ts, OR rename file to *.serial.test.ts
R2 mock.module(...) anywhere in the file Rename file to *.serial.test.ts (no DI on production code for testability)
R3 new PGLiteEngine( outside ~50 lines after a beforeAll( line Use the canonical block (below) inside beforeAll(
R4 Files creating new PGLiteEngine( without engine.disconnect( inside an afterAll( block Add afterAll(() => engine.disconnect())

Files that violated these rules at the isolation-lint baseline are listed in scripts/check-test-isolation.allowlist. The allow-list MUST shrink over time — never add new entries.

Canonical PGLite block (R3 + R4 compliant)

Every test file that needs a PGLite engine should use this exact pattern:

import { PGLiteEngine } from '../src/core/pglite-engine.ts';
import { resetPgliteState } from './helpers/reset-pglite.ts';

let engine: PGLiteEngine;

beforeAll(async () => {
  engine = new PGLiteEngine();
  await engine.connect({});
  await engine.initSchema();
});

afterAll(async () => {
  await engine.disconnect();
});

beforeEach(async () => {
  await resetPgliteState(engine);
});

Why this exact shape: beforeAll creates a single engine per file (PGLite WASM cold-start + initSchema is ~20s); beforeEach truncates user data via resetPgliteState ("two orders of magnitude faster" than fresh-engine-per-test); afterAll disconnects so the engine doesn't leak across file boundaries within a shard process.

withEnv pattern (R1 fix)

import { withEnv } from './helpers/with-env.ts';

test('reads OPENAI_API_KEY', async () => {
  await withEnv({ OPENAI_API_KEY: 'sk-test' }, async () => {
    expect(loadConfig().openai_key).toBe('sk-test');
  });
});

// Delete a var (override is undefined):
await withEnv({ GBRAIN_HOME: undefined }, fn);

// Multiple keys:
await withEnv({ A: '1', B: '2', C: undefined }, fn);

withEnv saves the prior value of every key it touches and restores via try/finally — including when the callback throws. It is cross-test safe but NOT intra-file concurrent-safe. process.env is process-global; two test.concurrent() calls in the same file both touching the same key will race. Files using withEnv stay outside the test.concurrent() codemod's eligibility filter.

When to quarantine instead of fix

Rename to *.serial.test.ts when:

  • The file uses mock.module(...) (R2 — there's no clean fix without changing production code).
  • The file is genuinely env-coupled (e.g. gbrain-home-isolation.test.ts, claw-test-cli.test.ts) — module-load env readers + ESM caching defeat dynamic-import-after-env tricks.
  • The file's tests intentionally share state across it() boundaries.

The quarantine has grown to dozens of files — treat it as debt: every addition needs a reason from the list above, and prefer fixing the contention root cause when one exists.

Unit test inventory

bun test runs all tests without a database. E2E tests skip gracefully when DATABASE_URL is not set.

Unit tests and what they cover:

  • test/markdown.test.ts — frontmatter parsing; splitBody sentinel precedence, horizontal-rule preservation, inferType wiki subtypes.
  • test/chunkers/recursive.test.ts — chunking.
  • test/parity.test.ts — operations contract parity.
  • test/cli.test.ts — CLI structure.
  • test/cli-finish-teardown.test.ts — the #2084 teardown contract: computeTeardownDeadlineMs formula/floor/live-registry scaling + GBRAIN_TEARDOWN_DEADLINE_MS override (garbage/zero/negative values fall back to the formula); finishCliTeardown clean path (drain BEFORE disconnect, no exit, no warn), backstop on hung drain or disconnect (honors an errored op's exit code), throwing drain/disconnect warned + swallowed; the gbrain-owned verdict channel is immune to PGLite WASM process.exitCode writes; flushThenExit unit coverage with mocked streams (exits once after both stream callbacks, non-TTY aliveness grace, blocked-pipe guard, EPIPE-safe, GBRAIN_FLUSH_GRACE_MS override).
  • test/flush-then-exit-harness.test.ts — real spawned-Bun pipe semantics for flushThenExit (fixture: test/fixtures/flush-then-exit-harness.ts): a 4MB piped stdout payload arrives byte-complete with the exit code even with a late reader, small output survives exit with a concurrent reader, and the fence resolves promptly (wall time well under the guard + grace ceiling).
  • test/cli-should-force-exit.test.tsshouldForceExitAfterMain daemon-survival gate: serve (stdio and --http) never force-exits, including with preceding global flags; op commands / empty / flag-only argv do; the #2084 case that space-separated global-flag VALUES can't fake a command (--timeout 30s serve resolves to the serve daemon, not a 30s command).
  • test/cli-exit-verdict-pin.test.ts — #2084 structural class pin: greps src/ so the NEXT raw process.exitCode = write fails CI (a raw write bypasses the gbrain-owned verdict channel and gets silently zeroed by the deliberate flush-exit — the bug that made doctor's FAIL path exit 0). Runtime variants live in test/cli-finish-teardown.test.ts; this is the review-time guard.
  • test/cli-pipe-truncation.test.ts — real-CLI pipe completeness (the #1959 incident class), implementation-agnostic: the actual CLI run the way agents run it (piped stdout) produces complete, parseable, byte-stable --tools-json output and exits deliberately, well under the teardown backstop. Synthetic flush-mechanism coverage stays in test/flush-then-exit-harness.test.ts.
  • test/volunteer-context.test.ts — push-based context core (#2095), hermetic in-memory PGLite: parseWindow lenient user:/assistant: parsing, multi-turn window extraction, confidence-gated volunteering (arm confidences, multi-turn/newest-turn boosts, min_confidence gate, max-pages cap), slug-only suppression, privacy (rationales are deterministic templates; synopses pass the takes/facts fence), and the approximate usage-stats join.
  • test/watch-command.test.tsgbrain watch push transport (#2095): streaming loop, rolling window, session dedupe, --json JSONL shape, channel: 'watch' event logging, clean EOF return. Hermetic PGLite + injected line/write deps (no subprocess, no real stdin).
  • test/watch-sigint.serial.test.tsgbrain watch SIGINT lifecycle against a real spawned CLI subprocess with a tmpdir brain. SERIAL: parallel unit shards flake on concurrent subprocess spawns (same rationale as apply-migrations-pglite-spawn.serial.test.ts).
  • test/autopilot-launchd-lifecycle.serial.test.ts — autopilot lifecycle behavior, not generated-string assertions: the full install → self-disable → status → reinstall → uninstall arc with launchctl replaced by an argv recorder and the generated wrapper executed by a REAL bash against a genuinely deleted repo (every platform), plus a darwin-only fail-SKIP describe against the real launchd under a per-run unique label (GBRAIN_AUTOPILOT_LABEL) so it can never collide with — or tear down — a real install on the host. Serial: spawns subprocesses and pins HOME/GBRAIN_HOME for the whole file.
  • test/agent-scheduler-contract.serial.test.ts — the documented external agent-scheduler shell chain (gbrain sync --repo X && gbrain embed --stale, live-sync.md / INSTALL_FOR_AGENTS.md Step 7) driven end-to-end through a real /bin/sh against a keyless PGLite brain: the && short-circuit IS the contract (argv arrays can't exercise it), the keyless bare stale embed exits 0, and the pull-failure case that must break the chain does. Anti-vacuity: the fixture commits a real page and every read-back asserts pages >= 1. Serial: real spawned CLI + tmpdir HOME.
  • test/cli-format-volunteer.test.tsformatResult's volunteer_context human rendering: pointer lines with confidence/arm/rationale, the empty-result message, the approximate stats summary.
  • test/config.test.ts — config redaction.
  • test/files.test.ts — MIME/hash.
  • test/import-file.test.ts — import pipeline.
  • test/upgrade.test.ts — schema migrations.
  • test/file-migration.test.ts — file migration.
  • test/file-resolver.test.ts — file resolution.
  • test/import-resume.test.ts — import checkpoints.
  • test/migrate.test.ts — migration: v8/v9 helper-btree-index SQL structural assertions; 1000-row wall-clock fixtures guarding the O(n²)→O(n log n) fix; v12/v13 SQL shape; sqlFor + transaction:false runner semantics; the max_stalled DEFAULT 1 regression guard; v24 sqlFor.pglite: '' no-op assertion; v117 context_volunteer_events (named + idempotent entry, documented columns + both source-scoped indexes after initSchema, insert + 90-day purgeStaleVolunteerEvents round-trip).
  • test/bootstrap.test.ts — bootstrap contract: no-op on fresh install, idempotent across two initSchema() calls, no-op on modern brain that already has every probed column, full bootstrap path on a simulated legacy brain, fresh-install regression guard, legacy links shape coverage.
  • test/schema-bootstrap-coverage.test.ts — CI guard. REQUIRED_BOOTSTRAP_COVERAGE lists every forward reference in PGLITE_SCHEMA_SQL; the test fails loudly if applyForwardReferenceBootstrap skips one (extend both arrays when adding a column-with-index to the embedded schema blob). Also parses src/core/migrate.ts source text for every ALTER TABLE ... ADD COLUMN (top-level sql:, sqlFor.{postgres,pglite} overrides, AND handler-body engine.runMigration(N, \ALTER TABLE ...`)) and asserts each (table, column) pair is covered by the bootstrap OR by the schema blob's CREATE TABLE bodies — catching the column-only forward-reference class (e.g. sources.archived, oauth_clients.source_id) that a CREATE INDEX parser alone can't see. parseBaseTableColumns` strips SQL line + block comments before identifying column names so commented-out lines don't hide adjacent columns.
  • test/helpers/schema-diff.ts + test/helpers/schema-diff.test.ts + test/e2e/schema-drift.test.ts — cross-engine schema parity gate. Helper exports pure snapshotSchema(query) / diffSnapshots(pg, pglite, opts) / formatDiffForFailure(diff) / isCleanDiff(diff) over a four-tuple per column (data_type, udt_name, is_nullable, column_default). E2E test spins up fresh PGLite + Postgres, runs engine.initSchema() on each, snapshots information_schema.columns, then diffs. 2-table allowlist (files, file_migration_ledger) — every other Postgres table must reach PGLite via PGLITE_SCHEMA_SQL or a migration's sqlFor.pglite branch. Sentinels for oauth_clients, mcp_request_log, access_tokens, eval_candidates give tighter blame messages. Skips without DATABASE_URL. Wired into scripts/e2e-test-map.ts so changes to src/schema.sql, src/core/pglite-schema.ts, or src/core/migrate.ts trigger it. The failure message names every drift with a paste-ready hint pointing at src/core/pglite-schema.ts.
  • test/setup-branching.test.ts — setup flow.
  • test/slug-validation.test.ts — slug validation.
  • test/storage.test.ts — storage backends.
  • test/supabase-admin.test.ts — Supabase admin.
  • test/yaml-lite.test.ts — YAML parsing.
  • test/check-update.test.ts — version check + update CLI.
  • test/pglite-engine.test.ts — PGLite engine, all BrainEngine methods including addLinksBatch / addTimelineEntriesBatch (empty batch, missing optionals, within-batch dedup via ON CONFLICT, missing-slug rows dropped by JOIN, half-existing batch, batch of 100) plus connect() error-wrap assertion (original error nested, #223 link in message, lock released).
  • test/links-timeline-jsonb-poison.test.ts — gbrain#1861 PGLite half (always-on, no DATABASE_URL). Locks the jsonb_to_recordset batch-insert path for links/timeline/takes against free-text "poison" payloads (commas, quotes, backslashes, braces, em-dashes) and asserts NUL is stripped from free-text body fields but rejected in identity fields. gbrain#2011 adds lone-UTF-16-surrogate cases: every free-text field (link context; timeline summary/detail/source; take claim/source) well-forms to U+FFFD across batch + scalar write paths, while a surrogate in an identity field (slug) still fail-closed rejects the batch. The Postgres lane (test/e2e/jsonb-batch-poison-postgres.test.ts) is the one that actually reproduced the original crash.
  • test/engine-factory.test.ts — engine factory + dynamic imports.
  • test/integrations.test.ts — recipe parsing, CLI routing, recipe validation.
  • test/publish.test.ts — content stripping, encryption, password generation, HTML output.
  • test/backlinks.test.ts — entity extraction, back-link detection, timeline entry generation.
  • test/lint.test.ts — LLM artifact detection, code fence stripping, frontmatter validation.
  • test/report.test.ts — report format, directory structure.
  • test/skills-conformance.test.ts — skill frontmatter + required sections validation.
  • test/resolver.test.ts — RESOLVER.md coverage, routing validation; round-trip that every quoted RESOLVER.md trigger matches a frontmatter triggers: entry in the target skill, and every name="<word>" reference in any SKILL.md resolves to a declared op in src/core/operations.ts or a Minions handler in PROTECTED_JOB_NAMES.
  • test/search.test.ts — RRF normalization, compiled truth boost, cosine similarity, dedup key.
  • test/sql-ranking.test.ts — source-boost helpers: longest-prefix-match in SQL CASE, detail=high temporal-bypass, three-meta-char LIKE escape (%, _, \), single-quote SQL-literal doubling, env override parsing for GBRAIN_SOURCE_BOOST + GBRAIN_SEARCH_EXCLUDE, resolveBoostMap / resolveHardExcludes merge semantics.
  • test/dedup.test.ts — source-aware dedup, compiled truth guarantee, layer interactions.
  • test/intent.test.ts — query intent classification: entity/temporal/event/general.
  • test/eval.test.ts — retrieval metrics: precisionAtK, recallAtK, mrr, ndcgAtK, parseQrels.
  • test/brainbench-fixtures.test.ts / test/brainbench-generator.test.ts / test/brainbench-metrics.test.ts / test/brainbench-continuity.test.ts / test/brainbench-writeback.test.ts / test/brainbench-adapters.test.ts / test/brainbench-scoreboard.test.ts — the BrainBench memory-conformance unit suites (src/eval/brainbench/): fixture loader/validator + the sealed-gold seal (a gold key inside a fixture must reject) and committed-corpus integrity; generator determinism (the committed corpus is exactly what gen.ts produces, holdout discipline, category counts); metric formulas over hand-built turn rows (zero should-retrieve turns, empty injections, acceptable-vs-gold asymmetry, micro-averaging); cross-harness continuity (writer's decision persists through the production write-back pipeline, reader recalls on the SAME brain); write-back grading the PRODUCTION conversation→facts pipeline via the injected gold extractor; adapter seam contracts over hermetic PGLite (budget caps, suppression modes); scoreboard + gate governance (baseline determinism, count-aware gating, corpus-bless modes, justification flow, isolation gates-at-zero).
  • test/eval-brainbench-e2e.test.ts — BrainBench CLI end-to-end via subprocess against a small tmp corpus: the literal exit codes (0 pass / 1 regression / 2 error-or-inconclusive — the CI product), --out artifact validity incl. _meta.metric_glossary, byte-deterministic --update-baseline, anti-vacuous-pass, and the eval run-all in-process wiring.
  • test/check-resolvable.test.ts — resolver reachability, MECE overlap, gap detection, proximity-based DRY detection, extractDelegationTargets coverage.
  • test/dry-fix.test.ts — auto-fix: three shape-aware expander pure-function tests; five guards (working-tree-dirty, no-git-backup, inside-code-fence, already-delegated within 40 lines, ambiguous-multi-match, block-is-callout).
  • test/doctor-fix.test.tsgbrain doctor --fix CLI integration: dry-run preview, apply path, JSON output shape.
  • test/backoff.test.ts — load-aware throttling, concurrency limits, active hours.
  • test/fail-improve.test.ts — deterministic/LLM cascade, JSONL logging, test generation, rotation.
  • test/transcription.test.ts — provider detection, format validation, API key errors.
  • test/enrichment-service.test.ts — entity slugification, extraction, tier escalation.
  • test/data-research.test.ts — recipe validation, MRR/ARR extraction, dedup, tracker parsing, HTML stripping.
  • test/minions.test.ts — Minions job queue: CRUD, state machine, backoff, stall detection, dependencies, worker lifecycle, lock management, claim mechanics, depth/child-cap, timeouts, cascade kill, idempotency, child_done inbox, attachments, removeOnComplete/Fail, max_stalled clamp/default/plumbing coverage.
  • test/extract.test.ts — link extraction, timeline extraction, frontmatter parsing, directory type inference.
  • test/extract-db.test.tsgbrain extract --source db: typed link inference, idempotency, --type filter, --dry-run JSON output.
  • test/extract-fs.test.tsgbrain extract --source fs: first-run inserts + second-run reports zero, dry-run dedups candidates across files, second-run perf regression guard for the N+1 dedup bug.
  • test/link-extraction.test.ts — canonical extractEntityRefs both formats, extractPageLinks dedup, inferLinkType heuristics, parseTimelineEntries date variants, isAutoLinkEnabled config.
  • test/graph-query.test.ts — direction in/out/both, type filter, indented tree output.
  • test/features.test.ts — feature scanning, brain_score calculation, CLI routing, persistence.
  • test/file-upload-security.test.ts — symlink traversal, cwd confinement, slug + filename allowlists, remote vs local trust.
  • test/query-sanitization.test.ts — prompt-injection stripping, output sanitization, structural boundary.
  • test/search-limit.test.tsclampSearchLimit default/cap behavior across list_pages and get_ingest_log.
  • test/repair-jsonb.test.ts — JSONB repair: TARGETS list, idempotency, engine-awareness.
  • test/migrations-v0_12_2.test.ts — JSONB-repair orchestrator phases: schema → repair → verify → record.
  • test/orphans.test.ts — orphans command: detection, pseudo filtering, text/json/count outputs, MCP op.
  • test/postgres-engine.test.tsstatement_timeout scoping: sql.begin + SET LOCAL shape, source-level grep guardrail against a reintroduced bare SET statement_timeout.
  • test/sync.test.ts — sync logic + regression guard asserting top-level engine.transaction is not called.
  • test/sync-pull-failed-anchor.serial.test.ts — #3068 regression: a failed internal git pull (local-path origin vs protocol.file.allow=never) with zero imports returns partial/pull_failed (not up_to_date), freezes last_commit + last_sync_at, recovers after a manual pull; fall-through import of local commits preserved. Serial: pins GBRAIN_HOME to a temp dir for the whole file.
  • test/sync-concurrency.test.tsautoConcurrency() thresholds + PGLite-forces-serial + explicit-override clamping; shouldRunParallel() explicit-bypasses-floor contract; parseWorkers() validation rejecting '0'/'-3'/'foo'/'1.5'/trailing chars.
  • test/sync-parallel.test.ts — PGLite-routed coverage of the bookmark gate under concurrency, head-drift gate, vanished-file failure capture, PGLite-stays-serial, and the gbrain-sync writer-lock contract.
  • test/sync-all-missing-path.test.tssync --all --missing-path <fail|skip> pure helpers: parseMissingPathMode (default fail, explicit values, loud rejection of bad/dangling values, never swallows a following flag) and partitionMissingPathSources (classification driven only by the injected pathExists predicate — no fs; null local_path passes through runnable; order preserved).
  • test/sync-failures.test.tsclassifyErrorCode regex coverage for all 12 codes against literal production message strings from markdown.ts and import-file.ts; summarizeFailuresByCode sort + pre-classified-honor; recordSyncFailures code-field persistence; acknowledgeSyncFailures AcknowledgeResult shape + backfill on legacy entries.
  • test/doctor.test.ts — doctor command; assertions that jsonb_integrity scans the four JSONB write sites and markdown_body_completeness is present.
  • test/utils.test.ts — shared SQL utilities + tryParseEmbedding null-return and single-warn semantics.
  • test/build-llms.test.tsllms.txt/llms-full.txt generator: path resolution, idempotence, spec shape, regen-drift guard, content contract, AGENTS.md install-path mirror, size-budget enforcement.
  • test/oauth.test.ts — OAuth 2.1 provider: register, getClient, client_credentials grant exchange, authorization_code flow with PKCE challenge/verifier, refresh token rotation, verifyAccessToken with both OAuth + legacy access_tokens fallback, revokeToken, sweepExpiredTokens; contract test asserting scope + localOnly annotations on all operations; coerceTimestamp unit cases (null/undefined/string/number/throw-on-NaN); NULL-expires_at-as-expired contract for both refresh + access token paths; cascade-delete contract asserting revoke-client purges oauth_tokens + oauth_codes via FK CASCADE; cross-client isolation (wrong-client attempt MUST reject AND rightful owner MUST still succeed atomically afterward); empty-string redirect_uri bypass guard; PKCE DCR public-client gate (token_endpoint_auth_method: "none" returns no client_secret, default client_secret_post clients get the one-time-reveal secret, getClient NULL→undefined normalization, full PKCE /authorize/token round-trip against a public client).
  • test/mcp-dispatch-summarize.test.tssummarizeMcpParams invariants: declared-keys allow-list intersection, attacker-key-name leak guard (unknown keys counted not named), 1KB byte bucketing for size-probe defense, missing op falls through to fully-redacted shape, declared-keys sorted for deterministic output.
  • test/trust-boundary-contract.test.ts — fail-closed trust semantics under cast bypass: ctx.remote === undefined treated as remote/untrusted at every flipped call site; as any and Partial<> spreads can't downgrade trust by accident.
  • test/check-resolvable-cli.test.ts — CLI wrapper: exit codes, JSON envelope shape, AGENTS.md fallback chain.
  • test/regression-v0_16_4.test.tsfindRepoRoot regression guard, hermetic startDir parameterization.
  • test/repo-root.test.tsfindRepoRoot walk semantics + default-arg parity; the 4-tier autoDetectSkillsDir fallback chain ($OPENCLAW_WORKSPACE~/.openclaw/workspace → repo-root → ./skills); RESOLVER.md/AGENTS.md filename precedence; explicit-env-wins-over-repo-root; tier-0 $GBRAIN_SKILLS_DIR valid/invalid/precedence-over-OPENCLAW_WORKSPACE; the install-path walk in autoDetectSkillsDirReadOnly; no-drift on primary success; AUTO_DETECT_HINT + AUTO_DETECT_HINT_READ_ONLY content; regression guard asserting the shared autoDetectSkillsDir MUST NEVER return 'install_path' source (how the read-path/write-path split stays safe).
  • test/resolver-merge.test.ts — multi-file resolver merge: findAllResolverFiles empty / RESOLVER.md-only / AGENTS.md-only / both-present (RESOLVER.md first); checkResolvable merge semantics across skills/RESOLVER.md + ../AGENTS.md for the OpenClaw layout where the skillpack ships a thin RESOLVER.md and the real dispatcher lives at the workspace root; dedup by skillPath (first occurrence wins); AGENTS.md-at-workspace-root works alone.
  • test/filing-audit.test.ts — filing audit: writes_pages / writes_to frontmatter, filing-rules JSON validation.
  • test/skill-brain-first.test.ts — shared frontmatter parser; analyzeSkillBrainFirst compliance ladder across 9 fixtures under test/fixtures/brain-first-skills/ (compliant-callout, compliant-phase, compliant-position, exempt-frontmatter, missing-brain-first, multi-pattern, negation-prose, no-external, typo-frontmatter); offset helpers; external-lookup regex shape; audit snapshot+diff transition logic; FORMERLY_HARDCODED_EXEMPT regression absorption.
  • test/routing-eval.test.ts — fixture parsing, structural routing, ambiguous_with, Haiku tie-break layer.
  • test/skill-manifest.test.ts — skill manifest parser: drift detection, managed-block markers.
  • test/skillify-scaffold.test.tsgbrain skillify scaffold stubs: SKILL.md, script, tests, routing-eval fixtures.
  • test/skillpack-install.test.tsgbrain skillpack install managed-block install / update / no-clobber semantics.
  • test/skillpack-sync-guard.test.ts — sync-guard: bundled skills stay byte-identical to skills/ source.
  • test/http-transport.test.ts — HTTP transport: bearer auth + missing/no-Bearer/unknown/revoked + /health bypass; dispatch.ts round-trip; invalid_params; application/json response shape (not SSE); CORS default-deny + allowlist; body cap on Content-Length AND chunked; two-bucket rate limit (refill, exhaust+Retry-After, LRU eviction, TTL prune, pre-auth IP fires before DB); mcp_request_log audit on success + auth_failed.
  • test/restart-sweep.test.tsrecipes/restart-sweep.md inlined script: sentinel-anchored fenced-block extraction with salted tmp filenames to bypass ESM cache; constructor-time env reads (proves no module-load snapshot); idempotency layer load/save/atomic-tmp-rename/corrupt-JSON-recovery/30-day-prune; (sessionKey, lastAlertedAt) cooldown gate with 6h threshold; AGGRESSIVE-gate two-state tests; execFile argv shape proving shell metachars in OPENCLAW_TELEGRAM_GROUP cannot reach /bin/sh; real-\n-not-literal alert formatting; GBRAIN_HOME state path override.
  • test/eval-longmemeval.test.ts — LongMemEval harness, hermetic with no DATABASE_URL and no API keys: PGLite create + reset over runtime-enumerated pg_tables, infrastructure-table preservation across resets, JSONL question parsing, retrieval-only and answer-gen modes via stubbed ThinkLLMClient, --limit cutoff, --keyword-only vs hybrid, default --expansion=off behavior, perf gate (p50 < 30ms / p99 < 50ms warm reset+import+search on Apple Silicon), --help works without a configured brain, fixture round-trip via test/fixtures/longmemeval-mini.jsonl.
  • test/longmemeval-sanitize.test.ts — sanitization parity pinning that INJECTION_PATTERNS from src/core/think/sanitize.ts is the single source of truth (adding a pattern there must cover both <take> framing and <chat_session> framing, no per-surface regex drift).
  • test/openai-compat-multimodal.test.ts — gateway's openai-compatible multimodal path: happy-path single + multi-input embedding, unauthenticated proxy mode, dimension-mismatch guard (throws AIConfigError with model id + observed + expected pre-storage), default-dim fallback when recipe declares default_dims, HTTP 401 / 400 / malformed-JSON / non-array error paths, regression that the existing Voyage /multimodalembeddings recipe still routes through its dedicated path. Hermetic via the __setEmbedTransportForTests seam.
  • test/serve-stdio-lifecycle.test.tsMCP_STDIO=1 env guard: stdin EOF does NOT trigger shutdown when the env is set, SIGTERM still does (guard scope is correct), unset env preserves the CLI lifecycle. Exercises the ServeOptions.mcpStdio?: boolean test seam directly so tests don't mutate process.env.

E2E test inventory

E2E tests live in test/e2e/ and run against real Postgres+pgvector (require DATABASE_URL), except where noted as PGLite in-memory (no DATABASE_URL needed).

  • bun run test:e2e runs Tier 1 (mechanical, all operations, no API keys). Includes dedicated cases for the postgres-engine addLinksBatch / addTimelineEntriesBatch bind path — postgres-js's JSONB bind (jsonb_to_recordset(($1::jsonb)->'rows')) differs from PGLite's and gets its own coverage.
  • test/e2e/search-quality.test.ts — search quality against PGLite (no API keys, in-memory).
  • test/e2e/graph-quality.test.ts — knowledge graph pipeline (auto-link via put_page, reconciliation, traversePaths) against PGLite in-memory.
  • test/e2e/jsonb-batch-poison-postgres.test.ts — gbrain#1861 regression, the engine that actually crashed. Seeds free-text "poison" context (Zoom URL with ?pwd=, commas, quotes, Windows backslash path, braces, em-dash) and asserts the links/timeline/takes batch writers no longer error with "malformed array literal"; also asserts NUL is stripped from free-text bodies (context/summary/detail/claim) and still rejected in identity fields. gbrain#2011 adds the lone-surrogate crash lock: a lone UTF-16 surrogate in free text (the value that aborted extract --stale with 22P02 on Supabase) well-forms to U+FFFD across batch + scalar paths (incl. timeline + take source), while a surrogate in an identity field still rejects the batch. DATABASE_URL-gated.
  • test/e2e/postgres-jsonb.test.ts — round-trips all 5 JSONB write sites (pages.frontmatter, raw_data.data, ingest_log.pages_updated, files.metadata, page_versions.frontmatter) against real Postgres and asserts jsonb_typeof='object' plus ->>'key' returns the expected scalar. Guards against the double-encode bug.
  • test/e2e/integrity-batch.test.ts — parity for scanIntegrity's batch-load fast path vs sequential. Cases (dedup, hits, validate, topPages) seed a fixture and assert both paths return identical results. Dedup case uses raw SQL via getConn().unsafe() to seed a (test-source-2, people/alice) row alongside the default-source row, since engine.putPage doesn't take a source_id. Pins multi-source overcounting; the "multi-source duplicate slugs scan once" case expects both batch + sequential paths to report 2.
  • test/e2e/jsonb-roundtrip.test.ts — companion regression against the 4 doctor-scanned JSONB sites. Assertion-level overlap with postgres-jsonb.test.ts is intentional defense-in-depth: if doctor's scan surface drifts from the actual write surface, one of these tests catches it.
  • test/e2e/sync.test.ts--skip-failed failure-loop test alongside happy-path tests: broken file → performSync returns blocked_by_failures with grouped breakdown → performSync({skipFailed: true}) advances bookmark and returns AcknowledgeResult with code summary → second broken file → second cycle. Saves and restores the user's real ~/.gbrain/sync-failures.jsonl so the test is hermetic. Asserts bookmark gating, JSONL state, dedup across paths, summary aggregation, and the literal doctor-rendering string format.
  • test/e2e/upgrade.test.ts — check-update against real GitHub API (network required).
  • test/e2e/minions-shell-pglite.test.ts — PGLite --follow inline shell-job path (in-memory, no DATABASE_URL required) — the path the minion-orchestrator skill documents for dev use.
  • test/e2e/pglite-cli-exit.serial.test.ts — real spawned-CLI exit behavior on PGLite (in-memory, no DATABASE_URL): read commands (search/get/query) exit 0 promptly; CLI_ONLY capture exits clean and frees the single-writer lock; the #2084 describes pin every swept disconnect site — a failed op exits 1 with the error on stderr, and the dashboard, read-only-timeout, doctor, and dream --dry-run paths all exit with no force-exit banner.
  • test/e2e/pgbouncer-teardown.test.ts — PgBouncer TRANSACTION-mode teardown (#2084 / the #1972→#2015→#2084 class). Pins the bug CLASS, not timings: a CLI op against a txn-mode pooled URL exits 0 with intact stdout and does NOT ride the 10s hard-deadline backstop (the engine.disconnect() did not return banner is the smoking gun — pre-#2084 it printed on 100% of query-shaped ops). Gated by GBRAIN_PGBOUNCER_URL + GBRAIN_PGBOUNCER_DIRECT_URL (NOT DATABASE_URL) — set automatically by bun run ci:local's pgbouncer compose service; skips gracefully elsewhere. Uses a DEDICATED gbrain_pgbouncer database so it never races the gbrain_test TRUNCATE fixtures.
  • test/e2e/volunteer-context-postgres.test.tsvolunteer_context on REAL Postgres (#2095; engine parity beyond the hermetic PGLite unit suite): resolution arms through the actual op handler, the fire-and-forget volunteer-event sink landing rows, the stats join, and the RLS pin that context_volunteer_events has ROW LEVEL SECURITY enabled (keeps the v35 auto-RLS event trigger honest for migration-created tables). DATABASE_URL-gated.
  • test/e2e/openclaw-reference-compat.test.tscheck-resolvable + skillpack install against a minimal AGENTS.md workspace fixture (test/fixtures/openclaw-reference-minimal/), regression guard for the OpenClaw deployment shape.
  • test/e2e/search-swamp.test.ts — reproduces the source-swamp case. Seeds a curated originals/talks/article-outline-fat-code page against two <fork>/chat/ pages stuffed with the same multi-word phrase. Asserts the article wins keyword AND vector ranking, that detail=high lets the chat swamp re-surface, and that source_id passes through the two-stage CTE intact. PGLite in-memory.
  • test/e2e/search-exclude.test.tstest/ + archive/ pages hidden by default, include_slug_prefixes opts back in, caller-supplied exclude_slug_prefixes adds to defaults. Both keyword and vector search paths.
  • test/e2e/engine-parity.test.ts — Postgres ↔ PGLite top-result and result-set parity for searchKeyword + searchVector (Postgres ranks pages then picks best chunk while PGLite returns chunks directly, so the source-boost behavior needs parity coverage). Skips without DATABASE_URL.
  • test/e2e/postgres-bootstrap.test.ts — exercises PostgresEngine.initSchema() directly against a fresh real Postgres database. Asserts the bootstrap path is no-op on fresh installs and that SCHEMA_SQL replays cleanly through the engine path (not via the standalone db.initSchema from src/core/db.ts).
  • test/e2e/http-transport.test.tsgbrain serve --http end-to-end against real Postgres: bearer auth round-trip, last_used_at SQL-level debounce, mcp_request_log row insertion on success and auth_failed paths, /health DB-down → 503 (DB-probing health check), and the dispatch round-trip with a real operation. Skips without DATABASE_URL.
  • test/e2e/serve-http-oauth.test.ts — real-Postgres E2E against gbrain serve --http with full OAuth 2.1. Spawns a subprocess server, registers a client via the CLI, mints client_credentials tokens, exercises the /mcp JSON-RPC pipeline. Real DCR /register HTTP-level response-shape test (asserts typeof body.client_id_issued_at === 'number' over the wire, RFC 7591 §3.2.1); real CLI subprocess test for revoke-client (registers → mints token → revokes via execSync → asserts token rejected at /mcp → asserts re-run exits 1); server fixture flips on --enable-dcr so /register is reachable. bun execSync env-inheritance contract: bun's execSync does NOT inherit env mutations done via process.env.X = ..., only OS-level env from before bun started. helpers.ts loads .env.testing and sets DATABASE_URL via process.env mutation, which is invisible to subprocesses unless env: { ...process.env } is passed explicitly — every subprocess call in this file passes env: { ...process.env }. Reference fix for the same failure mode in sibling sync/cycle/dream/claw-test E2Es. afterAll cleanup is guarded on clientId (won't throw if beforeAll failed before registration); cleanup errors surface to stderr without throwing so real test failures aren't masked. Also covers the trust-boundary fix: an HTTP MCP submit_job for name: "shell" MUST reject with a permission error (request handler sets remote: true and submit_job's protected-name guard fires), and the same guard rejects subagent submission. Skips without DATABASE_URL.
  • test/e2e/sync-parallel.test.tsDATABASE_URL-gated. 60-file Postgres sync at concurrency=4 imports all + no connection leak (probes pg_stat_activity before/after to confirm worker engines disconnected). 120-file serial-vs-parallel benchmark prints SYNC_PARALLEL_BENCH N files | serial=Xms | parallel(4)=Yms | speedup=Zx. Asserts parallel ≤ serial × 1.5 (CI-noise tolerant; not a strict speedup gate).
  • test/e2e/multi-source-bug-class.test.ts — PGLite in-memory regression suite pinning every multi-source bug site: listAllPageRefs ordering by (source_id, slug), getPage with sourceId picks the right (source, slug) row, extract-takes processes both overlapping people/alice rows independently, listPages filters correctly with PageFilters.sourceId, addLinksBatch with from/to_source_id targets the right rows, validateSourceId rejects path traversal, reverse-write disk layout uses brainDir/.sources/<id>/<slug>.md for non-default sources, copyMigrationSources lands source metadata before overlapping-slug pages. No DATABASE_URL needed. Wired into scripts/e2e-test-map.ts so changes to extract-takes / patterns / synthesize / embed / extract / migrate-engine auto-trigger it.
  • test/e2e/migrate-engine-sources-postgres.test.tsDATABASE_URL-gated companion for gbrain migrate --to: migrates a PGLite brain carrying two non-default sources with overlapping slugs into real Postgres and asserts copyMigrationSources created every sources FK parent (config JSONB intact, not double-encoded) before any page write. Unit-level manifest identity (crash manifest resumes only against the SAME target; legacy engine-only manifests start fresh) is test/migrate-engine-resume.test.ts.
  • test/e2e/facts-fence-reconcile-postgres.test.tsDATABASE_URL-gated round-trip for the escape-aware fence parser: renders a ## Facts fence whose cells carry literal pipes, backslashes (Windows paths), and empty cells via renderFactsTable, runs the wipe-and-reinsert reconcile (runExtractFacts) on real Postgres, and asserts every cell survives byte-identically with no column shift.
  • test/e2e/source-isolation-pglite.test.ts — PGLite in-memory regression suite pinning the source-isolation seal at two layers. Engine layer: searchKeyword / searchVector / searchKeywordChunks / listPages / getPage / traverseGraph / traversePaths apply sourceId (scalar fast path) and sourceIds (array path) correctly across both engines. Op-handler layer: routes through sourceScopeOpts(ctx) so a read+write-scoped OAuth client bound to --source dept-x cannot see rows from neighboring sources via search, query, list_pages, get_page, or find_experts. Covers both ctx.sourceId (single-source clients) and ctx.auth.allowedSources (federated_read clients) precedence; federated array wins over scalar wins over nothing. No DATABASE_URL needed.
  • test/e2e/think-source-isolation-pglite.test.ts — PGLite in-memory suite pinning the think gather stage's source scope: seeds three sources with cross-source links and embedded takes, then asserts runGather under a federated sourceIds grant (and under a scalar sourceId) keeps every stream — hybrid retrieval, takes keyword + vector (searchTakes/searchTakesVector), and the traversePaths graph walk — inside the grant while still reaching authorized neighboring sources. No DATABASE_URL needed.
  • test/e2e/skill-brain-first.test.ts — doctor reports skill_brain_first check with structured issues; --fix --dry-run previews insertion without writing; --fix applies the canonical Convention callout idempotently; brain_first: exempt frontmatter resolves the warn; brain_first_typo surfaces a paste-ready hint; audit JSONL records detected / resolved / fixed transitions; stable brain emits 0 audit lines/run.
  • Tier 2 (test/e2e/skills.test.ts) requires OpenClaw + API keys, runs nightly in CI.
  • If .env.testing doesn't exist in this directory, check sibling worktrees: find ../ -maxdepth 2 -name .env.testing -print -quit and copy it here if found.
  • Run E2E tests without asking permission. When you want to verify behavior, there's a relevant E2E test, or you're shipping anything covered by an E2E suite — spin up the test DB, run the tests, tear down. Don't ask, don't propose it, don't defer. The lifecycle is short (~2-30s startup, sub-minute tests, instant teardown) and the gate value is high. Skipping with "DATABASE_URL unset" is silent regression, not caution.

API keys and running ALL tests

ALWAYS source the user's shell profile before running tests:

source ~/.zshrc 2>/dev/null || true

This loads OPENAI_API_KEY and ANTHROPIC_API_KEY. Without these, Tier 2 tests skip silently. Do NOT skip Tier 2 tests just because they require API keys — load the keys and run them.

When asked to "run all E2E tests" or "run tests", that means ALL tiers:

  • Tier 1: bun run test:e2e (mechanical, sync, upgrade — no API keys needed)
  • Tier 2: test/e2e/skills.test.ts (requires OpenAI + Anthropic + openclaw CLI)
  • Always spin up the test DB, source zshrc, run everything, tear down.

E2E test DB lifecycle (ALWAYS follow this)

You are responsible for spinning up and tearing down the test Postgres container. Do not leave containers running after tests. Do not skip E2E tests, do not ask permission to run them — see the "run without asking" rule above.

  1. Check for .env.testing — if missing, copy from sibling worktree. Read it to get the DATABASE_URL (it has the port number).
  2. Check if the port is free: docker ps --filter "publish=PORT" — if another container is on that port, pick a different port (try 5435, 5436, 5437) and start on that one instead.
  3. Start the test DB:
    docker run -d --name gbrain-test-pg \
      -e POSTGRES_USER=postgres -e POSTGRES_PASSWORD=postgres \
      -e POSTGRES_DB=gbrain_test \
      -p PORT:5432 pgvector/pgvector:pg16
    
    Wait for ready: docker exec gbrain-test-pg pg_isready -U postgres
  4. Bootstrap the schema (required — fresh containers have no oauth_clients, mcp_request_log, pages etc.; tests like serve-http-oauth.test.ts will fail with relation "oauth_clients" does not exist if you skip this):
    DATABASE_URL=postgresql://postgres:postgres@localhost:PORT/gbrain_test \
      bun run src/cli.ts doctor --json > /dev/null 2>&1
    
    gbrain doctor triggers initSchema() on first connect, which is the canonical way to bring a fresh DB to head. apply-migrations --yes alone does NOT seed the base schema — it runs ALTER-style migrations on top of initSchema. Tests that bypass the engine (raw execSync-spawned auth register-client) hit the schema directly and need this step to have run first.
  5. Run E2E tests: DATABASE_URL=postgresql://postgres:postgres@localhost:PORT/gbrain_test bun run test:e2e
  6. Tear down immediately after tests finish (pass or fail): docker stop gbrain-test-pg && docker rm gbrain-test-pg

Never leave gbrain-test-pg running. If you find a stale one from a previous run, stop and remove it before starting a new one.